Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47320 * 2 1 4 4 C 1.52990 * 109.47653 * 239.99761 * 2 1 3 5 5 C 1.52999 * 109.47460 * 185.74821 * 4 2 1 6 6 H 1.08994 * 109.46943 * 304.68906 * 5 4 2 7 7 C 1.50710 * 109.47052 * 184.69626 * 5 4 2 8 8 H 1.07995 * 119.99743 * 119.99820 * 7 5 4 9 9 C 1.37873 * 119.99547 * 299.99656 * 7 5 4 10 10 N 1.31518 * 120.00855 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99698 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47013 * 60.00237 * 11 9 7 13 13 H 1.48504 * 109.47467 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47326 * 300.00035 * 11 9 7 15 15 N 1.46896 * 109.47180 * 64.69730 * 5 4 2 16 16 C 1.46904 * 110.99754 * 205.00111 * 15 5 4 17 17 C 1.50700 * 109.47005 * 179.97438 * 16 15 5 18 18 N 1.30517 * 126.34781 * 269.68807 * 17 16 15 19 19 N 1.28602 * 109.67238 * 179.82396 * 18 17 16 20 20 C 1.30522 * 109.67073 * 0.45092 * 19 18 17 21 21 N 1.35491 * 107.31018 * 359.72722 * 20 19 18 22 22 C 1.46500 * 126.98440 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.47280 * 295.04610 * 1 2 3 24 24 H 1.08996 * 109.46664 * 55.03921 * 1 2 3 25 25 H 1.08997 * 109.46923 * 175.04351 * 1 2 3 26 26 H 1.09002 * 109.47161 * 119.99460 * 2 1 3 27 27 H 1.09003 * 109.46810 * 59.99486 * 3 2 1 28 28 H 1.08997 * 109.46984 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46562 * 299.99826 * 3 2 1 30 30 H 1.09004 * 109.47249 * 305.74621 * 4 2 1 31 31 H 1.08998 * 109.47253 * 65.74116 * 4 2 1 32 32 H 0.96988 * 120.00376 * 179.97438 * 10 9 7 33 33 H 1.00902 * 111.00621 * 81.04530 * 15 5 4 34 34 H 1.08995 * 109.47006 * 299.99486 * 16 15 5 35 35 H 1.08995 * 109.47065 * 59.99842 * 16 15 5 36 36 H 1.08004 * 126.34316 * 179.73117 * 20 19 18 37 37 H 1.09002 * 109.46639 * 270.00311 * 22 21 20 38 38 H 1.09004 * 109.46555 * 29.99594 * 22 21 20 39 39 H 1.08997 * 109.47536 * 150.00212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5632 -0.8475 -1.1789 6 1 4.0037 0.1400 -1.0422 7 6 4.0766 -1.4536 -2.4597 8 1 4.7741 -0.9049 -3.0751 9 6 3.6558 -2.7085 -2.8456 10 7 2.8060 -3.3766 -2.0965 11 14 4.2915 -3.4595 -4.4335 12 1 5.7699 -3.5819 -4.3660 13 1 3.6919 -4.8053 -4.6195 14 1 3.9186 -2.5886 -5.5771 15 7 3.9315 -1.7090 -0.0475 16 6 5.2884 -1.4045 0.4262 17 6 5.6299 -2.3055 1.5848 18 7 5.4178 -2.0552 2.8481 19 7 5.8297 -3.0435 3.5604 20 6 6.3320 -3.9651 2.7845 21 7 6.2196 -3.5231 1.5086 22 6 6.6481 -4.2202 0.2934 23 1 -0.3634 0.4351 0.9311 24 1 -0.3632 0.5889 -0.8422 25 1 -0.3633 -1.0238 -0.0888 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.5952 -1.7149 -1.3020 31 1 1.7632 -0.1516 -2.1361 32 1 2.5097 -4.2592 -2.3682 33 1 3.8442 -2.6841 -0.2919 34 1 6.0005 -1.5667 -0.3829 35 1 5.3356 -0.3645 0.7488 36 1 6.7583 -4.9057 3.1008 37 1 7.6789 -3.9502 0.0641 38 1 6.5805 -5.2969 0.4494 39 1 6.0037 -3.9321 -0.5371 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381526086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = 64.071555 kcal Electronic energy + Delta-G solvation = -19417.734858 eV Core-core repulsion = 16589.358561 eV Total energy + Delta-G solvation = -2828.376296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.63114 -36.90485 -34.77959 -34.06437 -32.50739 -30.30969 -28.05351 -27.29811 -26.40225 -25.06880 -24.27330 -21.92343 -20.78712 -20.25261 -18.65422 -16.75971 -16.49289 -15.94064 -15.19970 -14.82402 -14.26432 -13.90753 -13.73928 -13.26824 -13.03182 -12.99490 -12.71243 -12.33689 -12.02524 -11.54827 -11.35730 -11.18793 -11.08976 -10.82271 -10.76313 -10.65371 -10.38413 -9.94834 -9.89418 -9.81488 -9.50047 -9.43292 -9.13152 -8.80238 -8.56056 -7.03973 -6.13166 -4.33655 2.22508 2.87623 3.11294 3.19855 3.23106 3.34113 4.22231 4.78803 4.88379 4.93072 5.03655 5.22997 5.52742 5.59770 5.83465 5.85830 5.90146 5.97801 6.14668 6.24745 6.28930 6.45002 6.50733 6.56570 6.59693 6.64881 6.85495 6.95892 6.98315 7.13666 7.23064 7.52755 7.61843 7.65103 7.94856 8.11420 8.40868 8.79081 8.97379 9.19451 9.38730 10.79320 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.009581 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.723407 B = 2921.780506 C = 4478.520215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.089 4.089 5 C 0.211 3.789 6 H 0.028 0.972 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.072 3.928 10 N -0.881 5.881 11 Si 0.884 3.116 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.276 1.276 15 N -0.673 5.673 16 C 0.146 3.854 17 C 0.205 3.795 18 N -0.293 5.293 19 N -0.305 5.305 20 C 0.130 3.870 21 N -0.474 5.474 22 C 0.071 3.929 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.359 0.641 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.211 0.789 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -1.498 2.141 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.128 4.128 5 C 0.104 3.896 6 H 0.046 0.954 7 C -0.591 4.591 8 H 0.070 0.930 9 C -0.131 4.131 10 N -0.519 5.519 11 Si 0.712 3.288 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.201 1.201 15 N -0.309 5.309 16 C 0.014 3.986 17 C -0.063 4.063 18 N -0.134 5.134 19 N -0.145 5.145 20 C -0.158 4.158 21 N -0.165 5.165 22 C -0.072 4.072 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.824 -0.574 3.854 5.460 hybrid contribution 1.323 -1.808 -2.922 3.682 sum 5.147 -2.381 0.932 5.748 Atomic orbital electron populations 1.21827 0.97513 1.00840 0.99683 1.21156 0.93395 0.95292 1.01669 1.21823 1.01106 0.97174 0.99518 1.21512 0.97315 1.00887 0.93079 1.19133 0.92782 0.91208 0.86486 0.95362 1.21861 1.27211 1.01742 1.08312 0.92953 1.25007 0.94349 0.97219 0.96510 1.69736 1.31468 1.13100 1.37628 0.86795 0.78945 0.78491 0.84594 1.20422 1.21178 1.20112 1.60979 1.18403 1.12578 1.38985 1.20172 0.94055 0.95542 0.88839 1.25313 0.97293 0.86412 0.97288 1.74229 1.19541 1.19672 0.99926 1.74176 1.13843 0.99231 1.27245 1.26228 1.06060 1.02805 0.80689 1.46205 1.45418 1.16338 1.08586 1.22122 1.01776 0.97674 0.85626 0.94325 0.93951 0.93204 0.90470 0.94500 0.92775 0.94035 0.89285 0.94723 0.92492 0.81877 0.94052 0.89521 0.77271 0.90388 0.89410 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 37.16 0.34 -2.12 16 2 C -0.10 -1.89 2.86 -90.62 -0.26 -2.15 16 3 C -0.14 -2.44 8.97 37.16 0.33 -2.11 16 4 C -0.09 -2.00 4.06 -26.74 -0.11 -2.11 16 5 C 0.21 4.80 2.09 -68.86 -0.14 4.66 16 6 H 0.03 0.63 6.04 -51.93 -0.31 0.32 16 7 C -0.55 -13.49 8.64 -34.44 -0.30 -13.79 16 8 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 9 C 0.07 1.74 5.03 -17.82 -0.09 1.65 16 10 N -0.88 -21.84 9.70 55.43 0.54 -21.30 16 11 Si 0.88 19.05 29.54 -169.99 -5.02 14.02 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 15 N -0.67 -14.72 5.58 -109.22 -0.61 -15.33 16 16 C 0.15 2.84 5.65 -4.97 -0.03 2.81 16 17 C 0.20 3.92 7.54 -154.98 -1.17 2.75 16 18 N -0.29 -6.16 12.21 32.80 0.40 -5.76 16 19 N -0.31 -5.88 12.21 29.69 0.36 -5.52 16 20 C 0.13 1.98 12.74 -89.95 -1.15 0.83 16 21 N -0.47 -7.52 3.15 -122.68 -0.39 -7.91 16 22 C 0.07 0.88 10.90 59.85 0.65 1.53 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.66 7.59 -51.93 -0.39 1.26 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.22 6.21 -51.93 -0.32 1.90 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.26 6.40 8.31 -40.82 -0.34 6.07 16 33 H 0.36 8.47 6.39 -39.29 -0.25 8.21 16 34 H 0.04 0.79 7.71 -51.93 -0.40 0.39 16 35 H 0.09 1.65 8.05 -51.93 -0.42 1.24 16 36 H 0.21 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.50 7.81 -51.93 -0.41 1.09 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -27.83 317.00 -8.05 -35.88 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.19 Total: 9.19 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.92 Total: -8.05 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.31 Total: -55.82 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.83 -8.05 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.949 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds