Wall clock time and date at job start Mon Mar 30 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47320 * 2 1 4 4 C 1.52990 * 109.47653 * 239.99761 * 2 1 3 5 5 C 1.52999 * 109.47460 * 185.74821 * 4 2 1 6 6 H 1.08994 * 109.46943 * 304.68906 * 5 4 2 7 7 C 1.50710 * 109.47052 * 184.69626 * 5 4 2 8 8 H 1.07995 * 119.99743 * 119.99820 * 7 5 4 9 9 C 1.37873 * 119.99547 * 299.99656 * 7 5 4 10 10 N 1.31518 * 120.00855 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99698 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47013 * 60.00237 * 11 9 7 13 13 H 1.48504 * 109.47467 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47326 * 300.00035 * 11 9 7 15 15 N 1.46896 * 109.47180 * 64.69730 * 5 4 2 16 16 C 1.46904 * 110.99754 * 205.00111 * 15 5 4 17 17 C 1.50700 * 109.47005 * 179.97438 * 16 15 5 18 18 N 1.30517 * 126.34781 * 269.68807 * 17 16 15 19 19 N 1.28602 * 109.67238 * 179.82396 * 18 17 16 20 20 C 1.30522 * 109.67073 * 0.45092 * 19 18 17 21 21 N 1.35491 * 107.31018 * 359.72722 * 20 19 18 22 22 C 1.46500 * 126.98440 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.47280 * 295.04610 * 1 2 3 24 24 H 1.08996 * 109.46664 * 55.03921 * 1 2 3 25 25 H 1.08997 * 109.46923 * 175.04351 * 1 2 3 26 26 H 1.09002 * 109.47161 * 119.99460 * 2 1 3 27 27 H 1.09003 * 109.46810 * 59.99486 * 3 2 1 28 28 H 1.08997 * 109.46984 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46562 * 299.99826 * 3 2 1 30 30 H 1.09004 * 109.47249 * 305.74621 * 4 2 1 31 31 H 1.08998 * 109.47253 * 65.74116 * 4 2 1 32 32 H 0.96988 * 120.00376 * 179.97438 * 10 9 7 33 33 H 1.00902 * 111.00621 * 81.04530 * 15 5 4 34 34 H 1.08995 * 109.47006 * 299.99486 * 16 15 5 35 35 H 1.08995 * 109.47065 * 59.99842 * 16 15 5 36 36 H 1.08004 * 126.34316 * 179.73117 * 20 19 18 37 37 H 1.09002 * 109.46639 * 270.00311 * 22 21 20 38 38 H 1.09004 * 109.46555 * 29.99594 * 22 21 20 39 39 H 1.08997 * 109.47536 * 150.00212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5632 -0.8475 -1.1789 6 1 4.0037 0.1400 -1.0422 7 6 4.0766 -1.4536 -2.4597 8 1 4.7741 -0.9049 -3.0751 9 6 3.6558 -2.7085 -2.8456 10 7 2.8060 -3.3766 -2.0965 11 14 4.2915 -3.4595 -4.4335 12 1 5.7699 -3.5819 -4.3660 13 1 3.6919 -4.8053 -4.6195 14 1 3.9186 -2.5886 -5.5771 15 7 3.9315 -1.7090 -0.0475 16 6 5.2884 -1.4045 0.4262 17 6 5.6299 -2.3055 1.5848 18 7 5.4178 -2.0552 2.8481 19 7 5.8297 -3.0435 3.5604 20 6 6.3320 -3.9651 2.7845 21 7 6.2196 -3.5231 1.5086 22 6 6.6481 -4.2202 0.2934 23 1 -0.3634 0.4351 0.9311 24 1 -0.3632 0.5889 -0.8422 25 1 -0.3633 -1.0238 -0.0888 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.5952 -1.7149 -1.3020 31 1 1.7632 -0.1516 -2.1361 32 1 2.5097 -4.2592 -2.3682 33 1 3.8442 -2.6841 -0.2919 34 1 6.0005 -1.5667 -0.3829 35 1 5.3356 -0.3645 0.7488 36 1 6.7583 -4.9057 3.1008 37 1 7.6789 -3.9502 0.0641 38 1 6.5805 -5.2969 0.4494 39 1 6.0037 -3.9321 -0.5371 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381526086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:48 Heat of formation + Delta-G solvation = 49.106940 kcal Electronic energy + Delta-G solvation = -19418.383772 eV Core-core repulsion = 16589.358561 eV Total energy + Delta-G solvation = -2829.025211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.97479 -38.61581 -36.13935 -35.57065 -34.25825 -31.87678 -29.66338 -28.43225 -27.83931 -26.89773 -25.84548 -23.20513 -22.52916 -21.65462 -20.30426 -18.39571 -17.91930 -17.31285 -16.89754 -16.18324 -15.84984 -15.46874 -15.30087 -14.73799 -14.52584 -14.27264 -14.18436 -13.68601 -13.50256 -13.03778 -12.92342 -12.86650 -12.56059 -12.53173 -12.49071 -12.23582 -12.00973 -11.62373 -11.34294 -11.19101 -11.12304 -11.04026 -10.89769 -10.46335 -10.15794 -8.79592 -7.98242 -6.26427 0.92559 1.39242 1.45532 1.49915 1.69111 1.94562 2.41788 3.12187 3.44509 3.79451 3.89968 4.10245 4.23253 4.33642 4.34477 4.40005 4.45965 4.62248 4.69826 4.80716 4.91812 4.95172 5.05192 5.06901 5.11338 5.22460 5.25071 5.30232 5.46039 5.50529 5.68059 5.84805 5.92461 6.01509 6.10598 6.24486 6.59540 6.94122 7.14260 7.48772 7.82191 8.90878 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.009581 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.723407 B = 2921.780506 C = 4478.520215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.081 4.081 5 C 0.213 3.787 6 H 0.026 0.974 7 C -0.570 4.570 8 H 0.043 0.957 9 C 0.043 3.957 10 N -0.895 5.895 11 Si 0.938 3.062 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.284 1.284 15 N -0.675 5.675 16 C 0.155 3.845 17 C 0.188 3.812 18 N -0.329 5.329 19 N -0.348 5.348 20 C 0.156 3.844 21 N -0.472 5.472 22 C 0.068 3.932 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.349 0.651 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.265 0.735 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -2.426 2.091 6.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.190 4.190 4 C -0.120 4.120 5 C 0.105 3.895 6 H 0.045 0.955 7 C -0.609 4.609 8 H 0.061 0.939 9 C -0.159 4.159 10 N -0.533 5.533 11 Si 0.765 3.235 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.210 1.210 15 N -0.310 5.310 16 C 0.023 3.977 17 C -0.082 4.082 18 N -0.169 5.169 19 N -0.187 5.187 20 C -0.132 4.132 21 N -0.163 5.163 22 C -0.073 4.073 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.280 0.720 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.659 -1.497 3.805 6.199 hybrid contribution 1.102 -1.571 -2.896 3.474 sum 5.762 -3.068 0.909 6.590 Atomic orbital electron populations 1.21762 0.95687 1.00656 1.01231 1.21042 0.94964 0.96006 0.99061 1.21747 1.00446 0.95901 1.00912 1.21362 0.97096 0.99464 0.94040 1.19081 0.92956 0.91119 0.86362 0.95546 1.22020 1.27562 1.02287 1.09043 0.93874 1.25477 0.94385 0.97342 0.98712 1.69855 1.31832 1.13065 1.38545 0.85940 0.78956 0.77442 0.81168 1.19338 1.21042 1.20978 1.60921 1.20142 1.11614 1.38342 1.20021 0.92847 0.95743 0.89127 1.25057 0.98682 0.87877 0.96540 1.74127 1.20702 1.21213 1.00892 1.74087 1.16066 1.00203 1.28351 1.27204 1.03074 1.03157 0.79738 1.46401 1.44540 1.15363 1.09969 1.22367 1.02295 0.99345 0.83332 0.92292 0.92903 0.94230 0.92668 0.92528 0.93779 0.93145 0.92061 0.95759 0.92640 0.83028 0.93822 0.89810 0.71989 0.87869 0.85903 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.19 71.98 0.66 -3.96 16 2 C -0.09 -3.60 2.86 -10.80 -0.03 -3.63 16 3 C -0.13 -4.55 8.97 71.98 0.65 -3.91 16 4 C -0.08 -3.69 4.06 30.59 0.12 -3.56 16 5 C 0.21 9.86 2.09 44.17 0.09 9.95 16 6 H 0.03 1.21 6.04 -2.39 -0.01 1.20 16 7 C -0.57 -28.20 8.64 25.60 0.22 -27.98 16 8 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 9 C 0.04 2.06 5.03 84.65 0.43 2.49 16 10 N -0.89 -44.74 9.70 21.45 0.21 -44.53 16 11 Si 0.94 38.83 29.54 68.60 2.03 40.86 16 12 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 13 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 15 N -0.68 -30.17 5.58 -499.47 -2.79 -32.95 16 16 C 0.15 6.11 5.65 85.56 0.48 6.59 16 17 C 0.19 7.15 7.54 137.98 1.04 8.19 16 18 N -0.33 -13.87 12.21 -50.15 -0.61 -14.49 16 19 N -0.35 -13.09 12.21 -59.99 -0.73 -13.82 16 20 C 0.16 4.33 12.74 180.11 2.30 6.63 16 21 N -0.47 -14.12 3.15 -542.06 -1.71 -15.82 16 22 C 0.07 1.51 10.90 127.77 1.39 2.90 16 23 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 2.40 7.59 -2.39 -0.02 2.39 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.58 6.49 -2.39 -0.02 1.56 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 3.13 6.21 -2.38 -0.01 3.12 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.26 12.79 8.31 -92.72 -0.77 12.02 16 33 H 0.35 16.78 6.39 -89.69 -0.57 16.21 16 34 H 0.04 1.69 7.71 -2.39 -0.02 1.67 16 35 H 0.08 3.29 8.05 -2.39 -0.02 3.27 16 36 H 0.26 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 2.07 7.81 -2.39 -0.02 2.06 16 Total: -1.00 -61.23 317.00 4.21 -57.02 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.46 Total: 30.03 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 7.35 Total: -6.29 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.63 Total: -121.62 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -61.23 4.21 -57.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.131 kcal (2) G-P(sol) polarization free energy of solvation -61.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds