Wall clock time and date at job start Mon Mar 30 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53000 * 109.47341 * 295.00521 * 4 2 1 6 6 H 1.08999 * 109.47392 * 54.99379 * 5 4 2 7 7 C 1.50696 * 109.47041 * 175.00185 * 5 4 2 8 8 H 1.08005 * 119.99790 * 239.99373 * 7 5 4 9 9 C 1.37877 * 120.00226 * 59.99962 * 7 5 4 10 10 N 1.31510 * 120.00060 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99845 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47054 * 119.99815 * 11 9 7 14 14 H 1.48501 * 109.46750 * 239.99848 * 11 9 7 15 15 N 1.46901 * 109.46870 * 294.99827 * 5 4 2 16 16 C 1.46900 * 111.00090 * 154.99933 * 15 5 4 17 17 C 1.50704 * 109.46987 * 180.02562 * 16 15 5 18 18 N 1.33246 * 125.52618 * 90.02952 * 17 16 15 19 19 C 1.30834 * 109.82356 * 179.97438 * 18 17 16 20 20 N 1.34427 * 108.08329 * 359.97438 * 19 18 17 21 21 C 1.46494 * 126.82422 * 179.97438 * 20 19 18 22 22 N 1.30710 * 125.52655 * 269.71672 * 17 16 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 32 32 H 0.97003 * 120.00102 * 180.02562 * 10 9 7 33 33 H 1.00907 * 110.99814 * 31.04656 * 15 5 4 34 34 H 1.08998 * 109.47214 * 299.99995 * 16 15 5 35 35 H 1.09001 * 109.46971 * 59.99883 * 16 15 5 36 36 H 1.08000 * 125.95585 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47256 * 90.00252 * 21 20 19 38 38 H 1.09002 * 109.47464 * 209.99958 * 21 20 19 39 39 H 1.09001 * 109.47206 * 330.00087 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6352 -2.1955 -1.1880 6 1 0.5563 -2.2707 -1.0527 7 6 2.0294 -2.8783 -2.4722 8 1 1.2751 -3.3414 -3.0912 9 6 3.3529 -2.9121 -2.8570 10 7 4.2714 -2.3479 -2.1036 11 14 3.8413 -3.7580 -4.4493 12 1 2.6303 -4.3091 -5.1087 13 1 4.4933 -2.7755 -5.3520 14 1 4.7888 -4.8624 -4.1526 15 7 2.3165 -2.8439 -0.0595 16 6 1.5639 -4.0161 0.4066 17 6 2.2915 -4.6531 1.5625 18 7 2.1153 -4.3526 2.8486 19 6 2.9026 -5.0903 3.5885 20 7 3.6102 -5.8921 2.7740 21 6 4.6136 -6.8826 3.1717 22 7 3.1938 -5.5940 1.4663 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6055 -0.2618 -2.1370 31 1 3.1264 -0.6443 -1.2951 32 1 5.2025 -2.3714 -2.3745 33 1 2.4707 -2.1903 0.6936 34 1 0.5706 -3.7051 0.7301 35 1 1.4723 -4.7360 -0.4067 36 1 2.9713 -5.0609 4.6660 37 1 4.1287 -7.8446 3.3378 38 1 5.3583 -6.9828 2.3820 39 1 5.1006 -6.5576 4.0911 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381528876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:46 Heat of formation + Delta-G solvation = 65.452029 kcal Electronic energy + Delta-G solvation = -19025.998846 eV Core-core repulsion = 16197.682411 eV Total energy + Delta-G solvation = -2828.316435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.91465 -38.73663 -35.85903 -34.86939 -33.86922 -32.17315 -30.33979 -28.03018 -27.89442 -26.91493 -25.59186 -22.87072 -22.66529 -21.33120 -20.28134 -18.04529 -17.79415 -16.89014 -16.76627 -16.55592 -15.84786 -15.46859 -15.17185 -14.86188 -14.44507 -14.07892 -13.86317 -13.81007 -13.60840 -13.02424 -12.94124 -12.85220 -12.58480 -12.51903 -12.41269 -12.32636 -11.99185 -11.62366 -11.27528 -11.12871 -10.93345 -10.73725 -10.69768 -10.42440 -10.23602 -8.62795 -7.82001 -6.03462 0.77138 1.40585 1.44414 1.52765 1.60610 1.97294 2.52195 3.28714 3.37594 3.63967 4.02570 4.11455 4.21562 4.31086 4.33330 4.39370 4.46072 4.68970 4.70862 4.86214 4.87311 4.93364 4.98248 5.06300 5.14184 5.26877 5.34429 5.39105 5.39913 5.44991 5.60881 5.72035 5.81703 6.06035 6.10289 6.45124 6.65780 6.98198 7.22281 7.28656 7.67453 9.13936 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.008007 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.402323 B = 3496.135035 C = 4943.280702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.095 4.095 5 C 0.223 3.777 6 H -0.008 1.008 7 C -0.546 4.546 8 H 0.036 0.964 9 C 0.051 3.949 10 N -0.866 5.866 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.291 1.291 15 N -0.651 5.651 16 C 0.167 3.833 17 C 0.227 3.773 18 N -0.576 5.576 19 C 0.257 3.743 20 N -0.392 5.392 21 C 0.091 3.909 22 N -0.345 5.345 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.312 0.688 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.273 0.727 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -2.913 13.554 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 C -0.191 4.191 4 C -0.133 4.133 5 C 0.116 3.884 6 H 0.010 0.990 7 C -0.585 4.585 8 H 0.055 0.945 9 C -0.153 4.153 10 N -0.502 5.502 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.217 1.217 15 N -0.284 5.284 16 C 0.035 3.965 17 C -0.056 4.056 18 N -0.305 5.305 19 C -0.039 4.039 20 N -0.183 5.183 21 C -0.050 4.050 22 N -0.175 5.175 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.288 0.712 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.209 -3.394 12.636 13.086 hybrid contribution -0.083 -0.400 -0.509 0.653 sum -0.292 -3.794 12.127 12.710 Atomic orbital electron populations 1.21785 0.95009 1.00914 1.01612 1.21211 0.96069 0.96556 0.98116 1.21719 1.00283 0.95378 1.01713 1.21570 1.02079 0.94821 0.94872 1.19075 0.89456 0.91378 0.88488 0.98990 1.21288 0.92768 1.38068 1.06330 0.94544 1.25381 0.96729 0.95142 0.98028 1.70101 1.00127 1.43055 1.36925 0.85968 0.77934 0.78600 0.81693 1.19859 1.20516 1.21723 1.60704 1.50062 1.08480 1.09196 1.19838 0.92366 0.94376 0.89942 1.24208 0.94691 0.93509 0.93162 1.70326 1.28518 1.29526 1.02153 1.26956 0.88389 0.87641 1.00896 1.50724 1.32596 1.31600 1.03401 1.22305 0.89376 0.90253 1.03024 1.78055 1.17947 1.21168 1.00319 0.92816 0.94149 0.91665 0.93077 0.91521 0.93892 0.92832 0.94937 0.91448 0.94147 0.86915 0.94196 0.91732 0.71191 0.88603 0.90336 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.95 71.98 0.64 -3.83 16 2 C -0.10 -3.77 2.82 -10.79 -0.03 -3.80 16 3 C -0.13 -4.26 9.19 71.98 0.66 -3.60 16 4 C -0.09 -4.45 3.97 30.59 0.12 -4.33 16 5 C 0.22 11.32 2.08 44.17 0.09 11.41 16 6 H -0.01 -0.38 6.00 -2.39 -0.01 -0.39 16 7 C -0.55 -31.12 8.67 25.60 0.22 -30.90 16 8 H 0.04 2.10 7.81 -2.91 -0.02 2.08 16 9 C 0.05 2.91 5.23 84.66 0.44 3.35 16 10 N -0.87 -50.58 10.86 21.45 0.23 -50.35 16 11 Si 0.93 45.65 29.54 68.60 2.03 47.67 16 12 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 14 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 15 N -0.65 -32.34 5.60 -499.46 -2.80 -35.14 16 16 C 0.17 7.64 6.10 85.56 0.52 8.16 16 17 C 0.23 9.64 7.65 138.63 1.06 10.70 16 18 N -0.58 -20.80 11.19 -191.80 -2.15 -22.95 16 19 C 0.26 6.54 12.66 180.36 2.28 8.82 16 20 N -0.39 -11.14 4.04 -373.62 -1.51 -12.65 16 21 C 0.09 1.41 11.53 127.77 1.47 2.89 16 22 N -0.35 -14.38 12.70 -51.33 -0.65 -15.04 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.04 1.43 6.46 -2.39 -0.02 1.41 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 2.00 6.29 -2.39 -0.02 1.99 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 3.60 6.22 -2.38 -0.01 3.59 16 32 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.31 15.12 6.41 -89.69 -0.57 14.55 16 34 H 0.04 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.06 3.20 8.00 -2.39 -0.02 3.19 16 36 H 0.27 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.82 319.01 3.11 -70.71 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.46 Total: 18.88 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 7.49 Total: -1.14 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -6.87 Total: -136.13 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.82 3.11 -70.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381528876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.165 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds