Wall clock time and date at job start Mon Mar 30 2020 03:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99502 * 2 1 4 4 O 1.21279 * 120.00473 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99675 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47022 * 180.02562 * 5 3 2 7 7 C 1.53513 * 114.17053 * 175.00136 * 6 5 3 8 8 N 1.47479 * 87.93049 * 139.67005 * 7 6 5 9 9 C 1.46897 * 110.99898 * 221.29253 * 8 7 6 10 10 C 1.53007 * 109.46641 * 174.93297 * 9 8 7 11 11 C 1.50702 * 115.54986 * 269.26398 * 10 9 8 12 12 H 1.08004 * 119.99754 * 114.81844 * 11 10 9 13 13 C 1.37874 * 120.00256 * 294.81789 * 11 10 9 14 14 N 1.31508 * 119.99878 * 354.79555 * 13 11 10 15 15 Si 1.86800 * 119.99944 * 174.80074 * 13 11 10 16 16 H 1.48496 * 109.47308 * 59.99412 * 15 13 11 17 17 H 1.48493 * 109.47027 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46794 * 299.99694 * 15 13 11 19 19 C 1.53000 * 117.49418 * 123.56465 * 10 9 8 20 20 C 1.52994 * 117.49747 * 54.94339 * 10 9 8 21 21 C 1.47478 * 87.83984 * 332.99176 * 8 7 6 22 22 H 1.09002 * 109.47339 * 299.99678 * 1 2 3 23 23 H 1.08995 * 109.47541 * 59.99991 * 1 2 3 24 24 H 1.09005 * 109.47238 * 179.97438 * 1 2 3 25 25 H 0.96996 * 119.99959 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.46726 * 60.00507 * 5 3 2 27 27 H 1.08995 * 109.47247 * 299.99959 * 5 3 2 28 28 H 1.09001 * 113.38497 * 41.92406 * 6 5 3 29 29 H 1.09001 * 113.47577 * 24.90651 * 7 6 5 30 30 H 1.08996 * 113.52985 * 254.45004 * 7 6 5 31 31 H 1.08992 * 109.47344 * 294.93577 * 9 8 7 32 32 H 1.08998 * 109.46606 * 54.93864 * 9 8 7 33 33 H 0.97007 * 119.99781 * 180.02562 * 14 13 11 34 34 H 1.08999 * 117.50193 * 359.97438 * 19 10 9 35 35 H 1.09002 * 117.49773 * 145.02490 * 19 10 9 36 36 H 1.09003 * 117.49582 * 214.97685 * 20 10 9 37 37 H 1.08997 * 117.50427 * 359.97438 * 20 10 9 38 38 H 1.08996 * 113.47647 * 141.77283 * 21 8 7 39 39 H 1.08993 * 113.47343 * 272.24702 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1558 2.6098 0.0011 7 6 5.6807 2.7374 0.1238 8 7 5.6161 3.8247 -0.8706 9 6 6.7197 3.7226 -1.8347 10 6 6.5485 4.7872 -2.9202 11 6 5.7608 4.3594 -4.1317 12 1 4.8122 4.8265 -4.3516 13 6 6.2512 3.3718 -4.9594 14 7 7.4509 2.8750 -4.7511 15 14 5.2115 2.7395 -6.3767 16 1 4.8999 3.8597 -7.3003 17 1 5.9606 1.6871 -7.1090 18 1 3.9472 2.1685 -5.8468 19 6 7.7040 5.7662 -3.1379 20 6 6.4137 6.2424 -2.4675 21 6 4.3925 3.1934 -1.3989 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.9500 -0.8400 0.0004 26 1 4.0095 0.6534 -0.8892 27 1 4.0089 0.6537 0.8908 28 1 3.5979 3.2657 0.6695 29 1 6.2198 1.8581 -0.2288 30 1 6.0119 3.0682 1.1081 31 1 7.6676 3.8779 -1.3197 32 1 6.7123 2.7331 -2.2918 33 1 7.7960 2.1804 -5.3337 34 1 8.5858 5.6522 -2.5075 35 1 7.8945 6.1012 -4.1575 36 1 5.7554 6.8905 -3.0462 37 1 6.4465 6.4414 -1.3964 38 1 3.6310 3.9108 -1.7047 39 1 4.5878 2.4357 -2.1577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382422445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:58 Heat of formation + Delta-G solvation = 20.109999 kcal Electronic energy + Delta-G solvation = -18970.803194 eV Core-core repulsion = 16108.227831 eV Total energy + Delta-G solvation = -2862.575364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06909 -38.88500 -36.10323 -34.58091 -31.98180 -31.60124 -28.14549 -26.15251 -25.54405 -25.03165 -22.48727 -20.91989 -20.43005 -19.07743 -18.80990 -17.21047 -16.19548 -15.76410 -15.57558 -15.00105 -14.55778 -14.29285 -14.03479 -13.76100 -13.32087 -13.19126 -12.47315 -12.41541 -12.02592 -11.91995 -11.47424 -11.23751 -11.09076 -10.89515 -10.78868 -10.42219 -10.19054 -9.96211 -9.94790 -9.66133 -9.22556 -9.18978 -8.75925 -8.43400 -8.13664 -7.80146 -6.02158 -4.04856 2.72573 3.20222 3.29389 3.33881 3.38075 4.41082 4.63375 4.76656 4.93366 5.12116 5.19886 5.24431 5.36355 5.54093 5.63085 5.67250 5.69466 5.80673 6.03319 6.07167 6.16726 6.26419 6.32330 6.47888 6.64678 6.67651 6.78727 6.88956 6.96299 7.02924 7.18179 7.21740 7.42193 7.57311 7.72358 7.92994 8.02317 8.26440 8.53861 8.96134 9.58117 11.06641 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.006493 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.908211 B = 4311.269102 C = 5224.523725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.744 5.744 3 C 0.513 3.487 4 O -0.531 6.531 5 C -0.130 4.130 6 C -0.109 4.109 7 C -0.002 4.002 8 N -0.467 5.467 9 C 0.070 3.930 10 C 0.055 3.945 11 C -0.485 4.485 12 H 0.057 0.943 13 C 0.069 3.931 14 N -0.882 5.882 15 Si 0.884 3.116 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.180 4.180 20 C -0.192 4.192 21 C 0.031 3.969 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.400 0.600 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.259 0.741 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -8.742 9.985 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.397 5.397 3 C 0.300 3.700 4 O -0.407 6.407 5 C -0.171 4.171 6 C -0.128 4.128 7 C -0.131 4.131 8 N -0.189 5.189 9 C -0.058 4.058 10 C 0.055 3.945 11 C -0.523 4.523 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.519 5.519 15 Si 0.712 3.288 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.218 4.218 20 C -0.230 4.230 21 C -0.098 4.098 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.704 -7.388 10.083 14.683 hybrid contribution -0.075 -1.720 -1.284 2.148 sum -7.778 -9.108 8.799 14.862 Atomic orbital electron populations 1.21490 0.80086 1.01820 1.02267 1.45884 1.07609 1.08943 1.77219 1.20877 0.90604 0.83354 0.75200 1.90711 1.70490 1.31219 1.48234 1.21692 0.91204 0.99974 1.04194 1.22651 0.95674 0.93905 1.00613 1.23813 0.95040 0.95414 0.98829 1.68869 1.04346 1.35488 1.10148 1.22132 0.91527 1.00411 0.91703 1.18687 0.96530 0.85590 0.93729 1.20492 1.04822 1.19726 1.07253 0.92478 1.24955 0.94691 0.96556 0.97168 1.70004 1.15614 1.27703 1.38572 0.86787 0.80550 0.78739 0.82762 1.20200 1.21342 1.20199 1.22751 0.91223 1.08535 0.99278 1.22712 1.01034 1.01139 0.98068 1.23599 0.94389 0.97860 0.93909 0.92439 0.92301 0.90998 0.76630 0.88671 0.88902 0.87682 0.92063 0.90780 0.93848 0.92595 0.93129 0.92179 0.90674 0.91215 0.91011 0.90383 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.74 -7.33 5.71 -67.07 -0.38 -7.71 16 3 C 0.51 6.98 7.83 -10.98 -0.09 6.89 16 4 O -0.53 -9.54 15.73 5.56 0.09 -9.45 16 5 C -0.13 -1.59 5.61 -27.88 -0.16 -1.74 16 6 C -0.11 -1.71 3.51 -90.09 -0.32 -2.03 16 7 C 0.00 -0.02 7.30 -7.54 -0.05 -0.08 16 8 N -0.47 -9.53 6.16 -244.62 -1.51 -11.03 16 9 C 0.07 1.63 4.62 -3.82 -0.02 1.61 16 10 C 0.06 1.40 1.37 -155.66 -0.21 1.19 16 11 C -0.49 -13.27 8.34 -34.44 -0.29 -13.56 16 12 H 0.06 1.60 7.82 -52.48 -0.41 1.18 16 13 C 0.07 1.87 5.22 -17.82 -0.09 1.77 16 14 N -0.88 -24.71 12.57 55.43 0.70 -24.02 16 15 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.18 -4.38 9.88 -26.73 -0.26 -4.64 16 20 C -0.19 -4.49 9.73 -26.73 -0.26 -4.75 16 21 C 0.03 0.62 6.60 -7.54 -0.05 0.57 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.40 2.64 8.83 -40.82 -0.36 2.28 16 26 H 0.10 1.12 7.81 -51.93 -0.41 0.71 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 1.75 7.63 -51.93 -0.40 1.36 16 29 H 0.06 0.96 7.81 -51.93 -0.41 0.55 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.99 7.87 -51.93 -0.41 0.58 16 32 H 0.06 1.41 6.65 -51.93 -0.35 1.06 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 1.38 8.03 -51.93 -0.42 0.97 16 35 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.07 1.47 7.35 -51.93 -0.38 1.09 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -31.58 323.14 -8.89 -40.47 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.47 Total: 4.18 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.16 Total: -13.35 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -1.19 Total: -42.76 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.58 -8.89 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382422445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.577 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds