Wall clock time and date at job start Mon Mar 30 2020 03:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99898 * 2 1 4 4 H 1.48498 * 109.46804 * 269.99306 * 3 2 1 5 5 H 1.48500 * 109.47182 * 29.99208 * 3 2 1 6 6 H 1.48500 * 109.47142 * 149.99472 * 3 2 1 7 7 C 1.37875 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47282 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46941 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46794 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99511 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46714 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46942 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47084 * 179.97438 * 16 15 14 18 18 C 1.34429 * 126.81895 * 124.99739 * 17 16 15 19 19 N 1.30837 * 108.07952 * 180.02562 * 18 17 16 20 20 C 1.33246 * 109.82318 * 359.97438 * 19 18 17 21 21 N 1.30712 * 108.94935 * 0.27015 * 20 19 18 22 22 H 0.96991 * 119.99877 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47366 * 60.00126 * 9 7 2 24 24 H 1.09008 * 109.47365 * 299.99990 * 9 7 2 25 25 H 1.08994 * 109.47401 * 60.00258 * 10 9 7 26 26 H 1.09000 * 109.46872 * 299.99878 * 10 9 7 27 27 H 1.08999 * 109.47219 * 60.00150 * 11 10 9 28 28 H 1.09000 * 109.46935 * 299.99578 * 11 10 9 29 29 H 1.09007 * 109.46945 * 60.00303 * 12 11 10 30 30 H 1.08994 * 109.47084 * 300.00167 * 12 11 10 31 31 H 1.00894 * 110.99797 * 56.05562 * 13 12 11 32 32 H 1.09007 * 109.46876 * 60.00835 * 14 13 12 33 33 H 1.08996 * 109.47148 * 300.00020 * 14 13 12 34 34 H 1.09002 * 109.47043 * 60.00030 * 15 14 13 35 35 H 1.08996 * 109.47276 * 299.99876 * 15 14 13 36 36 H 1.09002 * 109.47279 * 60.00111 * 16 15 14 37 37 H 1.08995 * 109.47424 * 300.00289 * 16 15 14 38 38 H 1.08000 * 125.96340 * 359.97438 * 18 17 16 39 39 H 1.08002 * 125.52127 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 2.6648 -8.5638 0.0031 15 6 1.8647 -9.8679 0.0024 16 6 2.8276 -11.0569 0.0043 17 7 2.0615 -12.3057 0.0043 18 6 2.1674 -13.3157 -0.8765 19 7 1.3132 -14.2453 -0.5328 20 6 0.6476 -13.8666 0.5576 21 7 1.0669 -12.6831 0.9211 22 1 -0.4849 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8713 -3.6039 0.8922 26 1 2.8727 -3.6046 -0.8877 27 1 0.8548 -5.0450 -0.8895 28 1 0.8528 -5.0447 0.8905 29 1 3.1007 -6.0923 0.8924 30 1 3.1020 -6.0921 -0.8876 31 1 1.1042 -7.4725 -0.7798 32 1 3.2920 -8.5224 0.8936 33 1 3.2934 -8.5231 -0.8864 34 1 1.2377 -9.9091 -0.8883 35 1 1.2358 -9.9088 0.8916 36 1 3.4542 -11.0156 0.8952 37 1 3.4569 -11.0163 -0.8847 38 1 2.8396 -13.3530 -1.7210 39 1 -0.1178 -14.4420 1.0570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385215113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:13 Heat of formation + Delta-G solvation = 63.133189 kcal Electronic energy + Delta-G solvation = -17001.878940 eV Core-core repulsion = 14173.461953 eV Total energy + Delta-G solvation = -2828.416987 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36729 -37.43937 -35.54517 -34.05294 -32.40191 -31.54054 -30.86756 -28.22001 -25.81060 -23.99973 -22.49605 -22.25139 -21.68500 -21.11680 -19.98238 -17.70166 -16.46866 -16.26052 -16.01611 -15.48799 -14.92695 -14.68701 -14.51592 -14.32985 -14.15215 -13.53055 -12.87869 -12.67953 -12.41541 -12.10291 -11.90217 -11.65707 -11.35838 -11.26196 -10.98591 -10.57257 -10.51171 -10.44157 -10.34238 -10.13828 -10.03166 -9.64384 -9.26813 -9.01103 -8.49795 -8.33042 -5.98085 -4.00452 1.29103 1.93724 2.63860 3.32156 3.38301 3.41705 3.82939 3.96836 4.16931 4.46510 4.47910 4.57604 4.71107 4.86383 4.93860 5.03610 5.27780 5.36929 5.38646 5.46256 5.67591 5.83745 5.86160 5.89508 6.08706 6.12376 6.20973 6.42833 6.48600 6.80192 6.92103 6.98547 7.20217 7.30796 7.70531 7.73390 7.86217 8.02854 8.45472 9.07069 9.63371 11.13248 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.083305 B = 0.002193 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.032262 B =12765.677701 C =12956.031176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.691 5.691 14 C 0.062 3.938 15 C -0.129 4.129 16 C 0.130 3.870 17 N -0.377 5.377 18 C 0.251 3.749 19 N -0.550 5.550 20 C 0.194 3.806 21 N -0.313 5.313 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.340 0.660 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.218 0.782 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 -25.553 -1.987 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.322 5.322 14 C -0.068 4.068 15 C -0.168 4.168 16 C 0.008 3.992 17 N -0.168 5.168 18 C -0.046 4.046 19 N -0.277 5.277 20 C -0.108 4.108 21 N -0.141 5.141 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.234 0.766 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.713 -25.278 -0.842 25.929 hybrid contribution 0.935 1.084 -1.122 1.819 sum 6.648 -24.194 -1.964 25.168 Atomic orbital electron populations 1.69966 1.06044 1.26539 1.50973 1.25045 0.94861 0.99261 0.95436 0.86603 0.79847 0.83543 0.78049 1.20715 1.21218 1.19909 1.21284 0.93004 0.91208 1.50374 0.92772 1.19096 0.94033 0.91348 0.97177 1.21590 0.99092 0.93944 1.00075 1.21646 0.97883 0.93831 1.02060 1.22089 0.96245 0.88352 1.00180 1.60458 1.19870 1.01719 1.50167 1.21834 0.94491 0.89708 1.00811 1.21832 0.98350 0.92081 1.04545 1.21852 0.93051 0.79861 1.04484 1.50615 1.29000 1.16311 1.20826 1.26092 0.98116 0.84486 0.95917 1.70546 1.11183 1.30044 1.15969 1.26047 0.99831 0.91793 0.93168 1.78091 1.05483 1.16081 1.14473 0.93033 0.96741 0.96582 0.93409 0.93688 0.92740 0.91588 0.91181 0.95487 0.84204 0.90662 0.95189 0.91425 0.89294 0.88987 0.88024 0.76580 0.76709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.12 -1.96 5.48 -26.73 -0.15 -2.11 16 12 C 0.06 0.81 5.69 -3.82 -0.02 0.78 16 13 N -0.69 -8.04 6.50 -113.77 -0.74 -8.78 16 14 C 0.06 0.52 5.69 -3.82 -0.02 0.50 16 15 C -0.13 -0.99 5.68 -26.73 -0.15 -1.14 16 16 C 0.13 0.73 6.55 -4.04 -0.03 0.70 16 17 N -0.38 -3.06 3.69 -62.63 -0.23 -3.29 16 18 C 0.25 1.80 12.63 -90.65 -1.14 0.65 16 19 N -0.55 -5.32 11.19 -15.83 -0.18 -5.50 16 20 C 0.19 1.80 13.03 -91.81 -1.20 0.61 16 21 N -0.31 -3.31 12.56 29.29 0.37 -2.94 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.34 3.73 8.73 -39.30 -0.34 3.39 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -34.19 332.36 -10.10 -44.29 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.65 Total: -3.28 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -3.40 Total: -15.75 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.04 Total: -47.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.19 -10.10 -44.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385215113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.423 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds