Wall clock time and date at job start Mon Mar 30 2020 04:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48502 * 109.47182 * 240.00017 * 3 2 1 5 5 H 1.48497 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46815 * 119.99917 * 3 2 1 7 7 C 1.37873 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46988 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47010 * 185.16259 * 12 11 10 14 14 C 1.45389 * 111.00470 * 294.08805 * 13 12 11 15 15 C 1.52863 * 110.44770 * 183.38392 * 14 13 12 16 16 C 1.52951 * 108.21640 * 60.66349 * 15 14 13 17 17 C 1.53004 * 109.59669 * 296.84523 * 16 15 14 18 18 H 1.09000 * 111.08971 * 284.94932 * 17 16 15 19 19 C 1.55081 * 107.13623 * 162.46593 * 17 16 15 20 20 N 1.47778 * 105.04757 * 272.38890 * 19 17 16 21 21 C 1.47638 * 107.59599 * 329.37515 * 20 19 17 22 22 C 1.42829 * 110.99818 * 160.74841 * 13 12 11 23 23 H 1.09000 * 105.89042 * 281.63610 * 22 13 12 24 24 H 0.97000 * 120.00372 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47078 * 60.00323 * 9 7 2 26 26 H 1.09004 * 109.47025 * 300.00259 * 9 7 2 27 27 H 1.09001 * 109.47079 * 59.99854 * 10 9 7 28 28 H 1.09004 * 109.46814 * 299.99918 * 10 9 7 29 29 H 1.09001 * 109.47365 * 59.99874 * 11 10 9 30 30 H 1.09004 * 109.47527 * 299.99866 * 11 10 9 31 31 H 1.09000 * 109.47018 * 65.16678 * 12 11 10 32 32 H 1.09000 * 109.47192 * 305.16143 * 12 11 10 33 33 H 1.08993 * 109.30506 * 63.07924 * 14 13 12 34 34 H 1.08998 * 109.14381 * 303.57804 * 14 13 12 35 35 H 1.08997 * 109.70990 * 300.98367 * 15 14 13 36 36 H 1.09000 * 109.71346 * 180.34383 * 15 14 13 37 37 H 1.08999 * 109.45335 * 56.87999 * 16 15 14 38 38 H 1.08999 * 109.45134 * 176.80572 * 16 15 14 39 39 H 1.09000 * 110.32668 * 153.49102 * 19 17 16 40 40 H 1.09007 * 110.41155 * 31.32744 * 19 17 16 41 41 H 1.00898 * 111.00024 * 207.74875 * 20 19 17 42 42 H 1.08993 * 109.96333 * 258.82443 * 21 20 19 43 43 H 1.09008 * 109.98584 * 137.60604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 7 1.7445 -7.4184 -0.1271 14 6 0.9216 -7.6641 1.0461 15 6 0.2331 -9.0248 0.9401 16 6 1.3150 -10.1025 0.8537 17 6 2.1362 -9.9043 -0.4219 18 1 1.5795 -10.2286 -1.3011 19 6 3.4543 -10.7021 -0.2455 20 7 4.3805 -9.7685 0.4285 21 6 4.0261 -8.4009 -0.0001 22 6 2.6091 -8.4650 -0.5712 23 1 2.7248 -8.3208 -1.6454 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.0389 -6.1461 0.9308 32 1 3.1606 -6.0411 -0.8419 33 1 0.1657 -6.8829 1.1260 34 1 1.5523 -7.6476 1.9349 35 1 -0.3874 -9.0540 0.0445 36 1 -0.3848 -9.1939 1.8220 37 1 1.9700 -10.0298 1.7219 38 1 0.8464 -11.0865 0.8345 39 1 3.8524 -10.9953 -1.2169 40 1 3.2857 -11.5823 0.3751 41 1 5.3396 -9.9821 0.1991 42 1 4.7212 -8.0594 -0.7670 43 1 4.0527 -7.7241 0.8540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385315539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:51 Heat of formation + Delta-G solvation = -17.013700 kcal Electronic energy + Delta-G solvation = -19009.984191 eV Core-core repulsion = 16281.632117 eV Total energy + Delta-G solvation = -2728.352073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48452 -36.59938 -34.76811 -33.60956 -31.97677 -30.23261 -28.79806 -27.51079 -25.24246 -23.81663 -22.32546 -22.16279 -20.50589 -19.86448 -18.65789 -17.06472 -16.28067 -16.03094 -15.27230 -14.94812 -14.63927 -14.41976 -13.88024 -13.70607 -13.29348 -12.92534 -12.82525 -12.49005 -12.42362 -12.11679 -11.79272 -11.59349 -11.45907 -11.20587 -10.97391 -10.82804 -10.60429 -10.48572 -10.41858 -10.29626 -10.14256 -9.56067 -9.22397 -8.98209 -8.73723 -8.29513 -7.96242 -5.94749 -3.96929 3.36120 3.40226 3.42823 3.81948 4.07453 4.39284 4.49958 4.52053 4.62864 4.85585 4.97483 5.14717 5.24306 5.28887 5.36777 5.40562 5.41665 5.54537 5.58230 5.64912 5.69144 5.78936 5.84405 5.92508 5.95545 6.00218 6.11931 6.18472 6.30501 6.33651 6.56755 6.59267 6.86964 7.02366 7.06334 7.16237 7.32075 7.53243 7.74304 7.91008 8.06611 8.49434 9.10439 9.66690 11.16585 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.003610 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.325353 B = 7755.050458 C = 8219.279518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.068 3.932 13 N -0.550 5.550 14 C 0.070 3.930 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.087 4.087 18 H 0.087 0.913 19 C 0.047 3.953 20 N -0.677 5.677 21 C 0.013 3.987 22 C 0.102 3.898 23 H 0.059 0.941 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.338 0.662 42 H 0.046 0.954 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -22.433 -0.014 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.059 4.059 13 N -0.273 5.273 14 C -0.057 4.057 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.106 4.106 18 H 0.105 0.895 19 C -0.083 4.083 20 N -0.307 5.307 21 C -0.118 4.118 22 C -0.008 4.008 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.939 -22.263 0.283 22.611 hybrid contribution 1.426 0.923 -0.382 1.741 sum 5.365 -21.341 -0.099 22.005 Atomic orbital electron populations 1.69957 1.06038 1.26604 1.50989 1.25028 0.94838 0.99189 0.95445 0.86677 0.79595 0.83254 0.78577 1.20279 1.21310 1.20282 1.21261 0.92973 0.91257 1.50389 0.92848 1.19079 0.94018 0.91296 0.97131 1.21597 0.99095 0.94036 0.99993 1.21687 0.97917 0.93553 1.02024 1.22150 0.95970 0.87728 1.00021 1.58400 1.27361 1.02890 1.38644 1.21640 0.96270 0.97543 0.90232 1.21576 0.97696 0.94332 1.02292 1.21561 0.97320 0.98534 0.97530 1.21826 0.95977 0.93682 0.99123 0.89519 1.22977 0.92334 0.96120 0.96859 1.62147 1.06813 1.02186 1.59526 1.23229 0.97442 0.91337 0.99817 1.20674 0.89663 0.90984 0.99511 0.92245 0.93010 0.96627 0.96748 0.93702 0.93540 0.91668 0.92611 0.94743 0.91234 0.90116 0.95378 0.91172 0.91330 0.91199 0.92099 0.94350 0.90060 0.84685 0.93546 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -1.99 4.99 -26.73 -0.13 -2.12 16 12 C 0.07 0.99 3.91 -3.82 -0.01 0.97 16 13 N -0.55 -7.32 4.31 -231.63 -1.00 -8.32 16 14 C 0.07 0.89 5.27 -4.71 -0.02 0.86 16 15 C -0.12 -1.26 6.11 -26.83 -0.16 -1.42 16 16 C -0.11 -1.08 5.08 -26.75 -0.14 -1.21 16 17 C -0.09 -0.85 3.40 -89.91 -0.31 -1.15 16 18 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 19 C 0.05 0.40 6.85 -2.24 -0.02 0.39 16 20 N -0.68 -6.66 7.43 -111.40 -0.83 -7.49 16 21 C 0.01 0.14 6.37 -3.47 -0.02 0.12 16 22 C 0.10 1.19 2.49 -70.30 -0.17 1.02 16 23 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.98 6.87 -51.93 -0.36 0.62 16 31 H 0.03 0.51 6.84 -51.93 -0.36 0.15 16 32 H 0.07 1.00 7.73 -51.93 -0.40 0.59 16 33 H 0.08 1.08 6.69 -51.93 -0.35 0.73 16 34 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.65 7.84 -51.92 -0.41 0.24 16 41 H 0.34 2.74 8.91 -39.29 -0.35 2.39 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.00 6.30 -51.92 -0.33 0.68 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -30.46 325.91 -10.87 -41.33 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.99 Total: -2.25 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.68 Total: -18.42 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -1.09 Total: -42.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.46 -10.87 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385315539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.311 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds