Wall clock time and date at job start Mon Mar 30 2020 04:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48502 * 109.47182 * 240.00017 * 3 2 1 5 5 H 1.48497 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46815 * 119.99917 * 3 2 1 7 7 C 1.37873 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46988 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47010 * 185.16259 * 12 11 10 14 14 C 1.45389 * 111.00470 * 294.08805 * 13 12 11 15 15 C 1.52863 * 110.44770 * 183.38392 * 14 13 12 16 16 C 1.52951 * 108.21640 * 60.66349 * 15 14 13 17 17 C 1.53004 * 109.59669 * 296.84523 * 16 15 14 18 18 H 1.09000 * 111.08971 * 284.94932 * 17 16 15 19 19 C 1.55081 * 107.13623 * 162.46593 * 17 16 15 20 20 N 1.47778 * 105.04757 * 272.38890 * 19 17 16 21 21 C 1.47638 * 107.59599 * 329.37515 * 20 19 17 22 22 C 1.42829 * 110.99818 * 160.74841 * 13 12 11 23 23 H 1.09000 * 105.89042 * 281.63610 * 22 13 12 24 24 H 0.97000 * 120.00372 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47078 * 60.00323 * 9 7 2 26 26 H 1.09004 * 109.47025 * 300.00259 * 9 7 2 27 27 H 1.09001 * 109.47079 * 59.99854 * 10 9 7 28 28 H 1.09004 * 109.46814 * 299.99918 * 10 9 7 29 29 H 1.09001 * 109.47365 * 59.99874 * 11 10 9 30 30 H 1.09004 * 109.47527 * 299.99866 * 11 10 9 31 31 H 1.09000 * 109.47018 * 65.16678 * 12 11 10 32 32 H 1.09000 * 109.47192 * 305.16143 * 12 11 10 33 33 H 1.08993 * 109.30506 * 63.07924 * 14 13 12 34 34 H 1.08998 * 109.14381 * 303.57804 * 14 13 12 35 35 H 1.08997 * 109.70990 * 300.98367 * 15 14 13 36 36 H 1.09000 * 109.71346 * 180.34383 * 15 14 13 37 37 H 1.08999 * 109.45335 * 56.87999 * 16 15 14 38 38 H 1.08999 * 109.45134 * 176.80572 * 16 15 14 39 39 H 1.09000 * 110.32668 * 153.49102 * 19 17 16 40 40 H 1.09007 * 110.41155 * 31.32744 * 19 17 16 41 41 H 1.00898 * 111.00024 * 207.74875 * 20 19 17 42 42 H 1.08993 * 109.96333 * 258.82443 * 21 20 19 43 43 H 1.09008 * 109.98584 * 137.60604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 7 1.7445 -7.4184 -0.1271 14 6 0.9216 -7.6641 1.0461 15 6 0.2331 -9.0248 0.9401 16 6 1.3150 -10.1025 0.8537 17 6 2.1362 -9.9043 -0.4219 18 1 1.5795 -10.2286 -1.3011 19 6 3.4543 -10.7021 -0.2455 20 7 4.3805 -9.7685 0.4285 21 6 4.0261 -8.4009 -0.0001 22 6 2.6091 -8.4650 -0.5712 23 1 2.7248 -8.3208 -1.6454 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.0389 -6.1461 0.9308 32 1 3.1606 -6.0411 -0.8419 33 1 0.1657 -6.8829 1.1260 34 1 1.5523 -7.6476 1.9349 35 1 -0.3874 -9.0540 0.0445 36 1 -0.3848 -9.1939 1.8220 37 1 1.9700 -10.0298 1.7219 38 1 0.8464 -11.0865 0.8345 39 1 3.8524 -10.9953 -1.2169 40 1 3.2857 -11.5823 0.3751 41 1 5.3396 -9.9821 0.1991 42 1 4.7212 -8.0594 -0.7670 43 1 4.0527 -7.7241 0.8540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385315539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:50 Heat of formation + Delta-G solvation = -37.238677 kcal Electronic energy + Delta-G solvation = -19010.861211 eV Core-core repulsion = 16281.632117 eV Total energy + Delta-G solvation = -2729.229094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37994 -37.69738 -36.19281 -35.03248 -33.76103 -31.10332 -30.35203 -28.56013 -26.77628 -25.12919 -23.47511 -23.18990 -21.98388 -21.21688 -19.54948 -18.42105 -17.86871 -17.13271 -16.54057 -16.47671 -16.00877 -15.53558 -15.06744 -14.61923 -14.53070 -14.20420 -13.88129 -13.73016 -13.61439 -13.35846 -13.27937 -13.05290 -12.79594 -12.59278 -12.34628 -12.23249 -12.06934 -12.01918 -11.61482 -11.48695 -11.32233 -11.20344 -11.05618 -10.93202 -10.54610 -9.50048 -8.99978 -8.19343 -6.31072 1.39502 1.43115 1.51047 2.41163 2.81869 3.13171 3.30106 3.59777 3.72559 3.76426 4.02702 4.08069 4.13985 4.25388 4.31068 4.45047 4.50844 4.53719 4.56525 4.63586 4.70279 4.81099 4.83633 4.87809 4.91532 4.98745 5.04692 5.10443 5.13716 5.22342 5.27546 5.31232 5.36202 5.47892 5.55233 5.77841 5.80860 5.87110 6.17881 6.26047 6.40887 6.53141 6.86220 7.38178 8.92411 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.003610 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.325353 B = 7755.050458 C = 8219.279518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.102 4.102 12 C 0.080 3.920 13 N -0.556 5.556 14 C 0.068 3.932 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.087 4.087 18 H 0.096 0.904 19 C 0.051 3.949 20 N -0.685 5.685 21 C 0.018 3.982 22 C 0.097 3.903 23 H 0.055 0.945 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.012 1.012 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.348 0.652 42 H 0.052 0.948 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -23.536 -0.240 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.140 4.140 12 C -0.047 4.047 13 N -0.279 5.279 14 C -0.059 4.059 15 C -0.155 4.155 16 C -0.144 4.144 17 C -0.106 4.106 18 H 0.115 0.885 19 C -0.078 4.078 20 N -0.316 5.316 21 C -0.114 4.114 22 C -0.014 4.014 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.165 0.835 42 H 0.070 0.930 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.233 -23.394 0.055 23.972 hybrid contribution 0.987 1.247 -0.310 1.620 sum 6.219 -22.147 -0.255 23.005 Atomic orbital electron populations 1.70099 1.07867 1.27841 1.51673 1.26022 0.95799 1.03475 0.94702 0.85486 0.78273 0.77968 0.79234 1.19084 1.20758 1.19117 1.21721 0.93575 0.92532 1.50595 0.92178 1.19004 0.94477 0.93249 0.94569 1.21397 0.97984 0.93646 1.00394 1.21498 0.98017 0.93165 1.01331 1.21910 0.95000 0.87485 1.00316 1.58325 1.27742 1.02951 1.38913 1.21657 0.95849 0.98671 0.89692 1.21563 0.97921 0.93149 1.02834 1.21520 0.96785 0.99157 0.96926 1.21884 0.96806 0.92383 0.99575 0.88546 1.22995 0.91324 0.95813 0.97704 1.62112 1.07816 1.01701 1.59988 1.23089 0.97240 0.91940 0.99084 1.20761 0.89869 0.91652 0.99081 0.92642 0.92761 0.99230 0.99326 0.93265 0.92979 0.92600 0.93106 0.94686 0.90670 0.91506 0.96214 0.91250 0.90119 0.92448 0.90054 0.92969 0.89040 0.83538 0.92970 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.10 -3.63 4.99 30.59 0.15 -3.48 16 12 C 0.08 2.31 3.91 86.30 0.34 2.65 16 13 N -0.56 -14.53 4.31 -886.75 -3.82 -18.36 16 14 C 0.07 1.72 5.27 86.54 0.46 2.17 16 15 C -0.12 -2.28 6.11 30.53 0.19 -2.09 16 16 C -0.11 -1.82 5.08 30.58 0.16 -1.67 16 17 C -0.09 -1.51 3.40 -10.33 -0.04 -1.54 16 18 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 19 C 0.05 0.74 6.85 86.85 0.59 1.33 16 20 N -0.69 -12.16 7.43 -506.34 -3.76 -15.93 16 21 C 0.02 0.37 6.37 86.13 0.55 0.92 16 22 C 0.10 2.12 2.49 45.38 0.11 2.24 16 23 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 24 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.84 6.87 -2.39 -0.02 1.82 16 31 H 0.04 1.02 6.84 -2.39 -0.02 1.00 16 32 H 0.07 2.09 7.73 -2.39 -0.02 2.07 16 33 H 0.07 1.83 6.69 -2.39 -0.02 1.81 16 34 H 0.02 0.52 8.07 -2.39 -0.02 0.50 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 1.18 7.84 -2.38 -0.02 1.16 16 41 H 0.35 4.92 8.91 -89.70 -0.80 4.12 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.49 6.30 -2.38 -0.02 1.48 16 Total: -1.00 -65.55 325.91 -1.61 -67.16 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.16 Total: 11.57 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.51 Total: -33.48 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -7.30 Total: -92.36 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.55 -1.61 -67.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385315539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.922 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds