Wall clock time and date at job start Mon Mar 30 2020 04:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99663 * 2 1 4 4 H 1.48499 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47116 * 300.00227 * 3 2 1 6 6 H 1.48504 * 109.46904 * 60.00247 * 3 2 1 7 7 C 1.37878 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46720 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47241 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47008 * 180.02562 * 12 11 10 14 14 C 1.47762 * 111.00074 * 293.95210 * 13 12 11 15 15 C 1.52544 * 111.88150 * 180.73892 * 14 13 12 16 16 C 1.53916 * 111.49563 * 307.03508 * 15 14 13 17 17 C 1.51844 * 106.68351 * 55.33676 * 16 15 14 18 18 H 1.09003 * 110.83961 * 57.80640 * 17 16 15 19 19 C 1.53156 * 116.24047 * 186.32957 * 17 16 15 20 20 N 1.49041 * 103.47451 * 155.18339 * 19 17 16 21 21 C 1.48644 * 108.28622 * 335.60562 * 20 19 17 22 22 C 1.45092 * 110.99879 * 54.71193 * 13 12 11 23 23 H 1.09001 * 109.69820 * 289.87318 * 22 13 12 24 24 H 0.96999 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46950 * 60.00167 * 9 7 2 26 26 H 1.08993 * 109.46689 * 299.99724 * 9 7 2 27 27 H 1.09001 * 109.47586 * 59.99808 * 10 9 7 28 28 H 1.08999 * 109.47497 * 299.99940 * 10 9 7 29 29 H 1.09000 * 109.47186 * 60.00289 * 11 10 9 30 30 H 1.08999 * 109.47377 * 299.99994 * 11 10 9 31 31 H 1.09000 * 109.47022 * 59.99545 * 12 11 10 32 32 H 1.09002 * 109.46709 * 299.99796 * 12 11 10 33 33 H 1.09001 * 108.99425 * 60.11733 * 14 13 12 34 34 H 1.09002 * 108.93462 * 301.31597 * 14 13 12 35 35 H 1.09001 * 109.07468 * 186.52263 * 15 14 13 36 36 H 1.08995 * 109.07622 * 67.55278 * 15 14 13 37 37 H 1.08996 * 110.00362 * 174.62607 * 16 15 14 38 38 H 1.09002 * 110.01004 * 296.04218 * 16 15 14 39 39 H 1.09008 * 110.61981 * 273.67364 * 19 17 16 40 40 H 1.08998 * 110.62641 * 36.52714 * 19 17 16 41 41 H 1.00902 * 110.99933 * 213.52286 * 20 19 17 42 42 H 1.08999 * 110.16669 * 237.84641 * 21 20 19 43 43 H 1.08993 * 110.16856 * 116.04542 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 6 2.4748 -6.1499 -0.0011 13 7 1.7404 -7.4222 -0.0022 14 6 0.9891 -7.6011 1.2575 15 6 0.2328 -8.9255 1.2852 16 6 -0.6553 -9.0940 0.0394 17 6 0.2522 -8.9349 -1.1675 18 1 1.0627 -9.6633 -1.1420 19 6 -0.4372 -8.9139 -2.5350 20 7 0.5189 -8.1598 -3.3944 21 6 1.3446 -7.2873 -2.5190 22 6 0.8040 -7.4810 -1.1090 23 1 -0.0156 -6.7839 -0.9343 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5575 0.8880 27 1 2.8715 -3.6046 0.8890 28 1 2.8728 -3.6038 -0.8909 29 1 0.8543 -5.0447 -0.8923 30 1 0.8535 -5.0450 0.8877 31 1 3.1008 -6.0921 0.8894 32 1 3.1022 -6.0922 -0.8906 33 1 0.2767 -6.7831 1.3650 34 1 1.6884 -7.5742 2.0932 35 1 -0.3939 -8.9593 2.1765 36 1 0.9505 -9.7448 1.3245 37 1 -1.1095 -10.0848 0.0366 38 1 -1.4300 -8.3273 0.0272 39 1 -0.5743 -9.9277 -2.9114 40 1 -1.3941 -8.3954 -2.4747 41 1 0.0292 -7.6157 -4.0889 42 1 1.2407 -6.2453 -2.8214 43 1 2.3905 -7.5903 -2.5654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385315541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:57 Heat of formation + Delta-G solvation = -14.776810 kcal Electronic energy + Delta-G solvation = -19285.645167 eV Core-core repulsion = 16557.390093 eV Total energy + Delta-G solvation = -2728.255075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43235 -36.61317 -34.94274 -33.50186 -31.78874 -29.73106 -28.59430 -27.68237 -25.30085 -23.70475 -22.19787 -21.70452 -20.58426 -20.17571 -19.19071 -16.41349 -16.22003 -15.86174 -15.29421 -14.74410 -14.67499 -14.44595 -14.27257 -13.46674 -13.11900 -13.06474 -12.75856 -12.62886 -12.20145 -11.90280 -11.80321 -11.68614 -11.48191 -11.10902 -10.96045 -10.88175 -10.59067 -10.54517 -10.49062 -10.37970 -10.09229 -9.66082 -9.43096 -9.08238 -8.59087 -8.36115 -8.12223 -6.00799 -4.03174 3.29957 3.37358 3.41825 3.87135 4.11426 4.32888 4.45338 4.61634 4.90348 4.98747 5.05941 5.22743 5.29036 5.32171 5.35003 5.37299 5.45181 5.50028 5.61791 5.70932 5.75489 5.78018 5.82129 5.87183 5.97238 5.99154 6.04842 6.12965 6.26158 6.31127 6.46293 6.64753 6.71893 6.89065 7.06721 7.13865 7.22018 7.23337 7.67065 7.81521 7.99526 8.42818 9.04541 9.61160 11.10593 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.004185 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.877730 B = 6689.054026 C = 6997.688104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.153 4.153 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.046 3.954 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.096 4.096 18 H 0.092 0.908 19 C 0.050 3.950 20 N -0.681 5.681 21 C 0.055 3.945 22 C 0.052 3.948 23 H 0.047 0.953 24 H 0.259 0.741 25 H 0.012 0.988 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.338 0.662 42 H 0.059 0.941 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 -19.220 -1.207 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.192 4.192 12 C -0.080 4.080 13 N -0.234 5.234 14 C -0.082 4.082 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.116 4.116 18 H 0.110 0.890 19 C -0.080 4.080 20 N -0.310 5.310 21 C -0.074 4.074 22 C -0.058 4.058 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.153 0.847 42 H 0.078 0.922 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.048 -20.031 -1.314 20.074 hybrid contribution -0.887 2.520 0.376 2.698 sum -0.935 -17.511 -0.938 17.561 Atomic orbital electron populations 1.69979 1.06096 1.26440 1.51157 1.25040 0.94837 0.99289 0.95360 0.86550 0.80164 0.83812 0.77584 1.19694 1.21005 1.21004 1.21327 0.93085 0.91148 1.50199 0.92644 1.19091 0.94023 0.91585 0.96883 1.21543 0.98950 0.93702 1.00228 1.22275 0.99056 0.96523 1.01304 1.22360 0.96455 0.86443 1.02732 1.62743 1.25302 1.33671 1.01716 1.22199 0.96718 0.96928 0.92348 1.21580 0.98281 0.97757 0.97634 1.21466 0.97444 1.01670 0.94198 1.22105 0.98590 0.97536 0.93326 0.88954 1.22607 0.93881 0.99049 0.92414 1.62633 1.24641 1.28938 1.14778 1.22296 0.99083 0.95782 0.90259 1.22442 0.94693 0.96520 0.92161 0.93511 0.93102 0.96944 0.96910 0.93427 0.93404 0.92620 0.92602 0.90832 0.90606 0.94172 0.90649 0.91538 0.91447 0.91570 0.91984 0.90274 0.93739 0.84662 0.92233 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.15 -2.60 4.41 -26.73 -0.12 -2.72 16 12 C 0.05 0.68 5.12 -3.82 -0.02 0.66 16 13 N -0.51 -6.67 4.99 -226.37 -1.13 -7.80 16 14 C 0.05 0.55 5.09 -3.58 -0.02 0.53 16 15 C -0.11 -1.13 5.97 -26.49 -0.16 -1.29 16 16 C -0.11 -1.06 5.74 -26.84 -0.15 -1.22 16 17 C -0.10 -1.05 2.72 -89.73 -0.24 -1.29 16 18 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.05 0.51 7.20 -2.55 -0.02 0.49 16 20 N -0.68 -7.72 7.48 -111.12 -0.83 -8.55 16 21 C 0.05 0.69 6.48 -3.24 -0.02 0.67 16 22 C 0.05 0.66 1.02 -67.68 -0.07 0.59 16 23 H 0.05 0.67 6.50 -51.93 -0.34 0.34 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.97 6.18 -51.93 -0.32 0.65 16 30 H 0.06 0.98 6.55 -51.93 -0.34 0.64 16 31 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.08 1.07 7.60 -51.93 -0.39 0.67 16 33 H 0.04 0.53 6.39 -51.93 -0.33 0.20 16 34 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 39 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.34 3.40 8.93 -39.29 -0.35 3.05 16 42 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 43 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -30.23 324.82 -10.79 -41.02 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.93 Total: -0.55 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.51 Total: -19.24 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -1.22 Total: -42.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.23 -10.79 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385315541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.245 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds