Wall clock time and date at job start Mon Mar 30 2020 03:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48501 * 109.47027 * 239.99818 * 3 2 1 5 5 H 1.48495 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46891 * 119.99922 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47287 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47287 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.47102 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99827 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46790 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46909 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47171 * 179.97438 * 16 15 14 18 18 C 1.35308 * 125.86965 * 124.99697 * 17 16 15 19 19 C 1.35347 * 106.17713 * 179.97438 * 18 17 16 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 H 0.96997 * 119.99459 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47806 * 59.99361 * 9 7 2 24 24 H 1.09004 * 109.47152 * 299.99623 * 9 7 2 25 25 H 1.09004 * 109.47248 * 59.99959 * 10 9 7 26 26 H 1.08999 * 109.47642 * 299.99753 * 10 9 7 27 27 H 1.09004 * 109.47227 * 59.99448 * 11 10 9 28 28 H 1.09004 * 109.47365 * 300.00060 * 11 10 9 29 29 H 1.09004 * 109.47248 * 60.00338 * 12 11 10 30 30 H 1.09000 * 109.47189 * 299.99853 * 12 11 10 31 31 H 1.00898 * 110.99930 * 56.04522 * 13 12 11 32 32 H 1.08995 * 109.47412 * 60.00323 * 14 13 12 33 33 H 1.08997 * 109.46933 * 299.99604 * 14 13 12 34 34 H 1.08995 * 109.47091 * 59.99867 * 15 14 13 35 35 H 1.08996 * 109.46859 * 299.99952 * 15 14 13 36 36 H 1.09002 * 109.46649 * 59.99895 * 16 15 14 37 37 H 1.09000 * 109.47178 * 300.00172 * 16 15 14 38 38 H 1.07997 * 126.91159 * 359.97438 * 18 17 16 39 39 H 1.08002 * 126.75518 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7400 -7.4223 0.0031 14 6 2.6645 -8.5639 0.0031 15 6 1.8643 -9.8680 0.0038 16 6 2.8272 -11.0571 0.0031 17 7 2.0612 -12.3058 0.0044 18 6 2.1816 -13.3108 -0.8936 19 6 1.2931 -14.2603 -0.5184 20 7 0.6801 -13.7957 0.5761 21 7 1.1571 -12.6351 0.8595 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5572 -0.8895 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8532 -5.0451 -0.8885 28 1 0.8539 -5.0447 0.8914 29 1 3.1011 -6.0919 0.8919 30 1 3.1012 -6.0928 -0.8882 31 1 1.1033 -7.4730 -0.7781 32 1 3.2930 -8.5224 0.8926 33 1 3.2918 -8.5234 -0.8874 34 1 1.2361 -9.9093 -0.8860 35 1 1.2367 -9.9087 0.8939 36 1 3.4558 -11.0159 0.8927 37 1 3.4546 -11.0161 -0.8873 38 1 2.8520 -13.3478 -1.7396 39 1 1.1136 -15.2066 -1.0070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385324058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:09 Heat of formation + Delta-G solvation = 48.356258 kcal Electronic energy + Delta-G solvation = -17039.130782 eV Core-core repulsion = 14210.073020 eV Total energy + Delta-G solvation = -2829.057763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.14361 -38.37537 -36.77740 -35.65884 -34.18918 -32.29498 -31.90829 -29.82394 -27.16937 -25.56352 -23.69258 -23.08881 -22.85660 -22.03683 -21.56151 -18.50400 -18.40671 -17.42022 -17.16601 -16.53659 -16.15325 -15.82917 -15.53583 -15.44026 -15.09471 -14.57304 -14.20821 -13.81036 -13.59424 -13.32854 -12.95303 -12.83415 -12.73409 -12.49846 -12.30272 -12.26212 -12.10178 -11.94505 -11.75005 -11.36504 -11.31503 -11.10753 -10.94121 -10.55243 -10.30961 -9.36926 -8.19914 -6.31734 0.70906 1.39431 1.43023 1.50985 1.51313 1.65756 2.40822 3.10423 3.12584 3.56934 3.79884 3.87838 4.02698 4.14860 4.19305 4.28017 4.35851 4.36348 4.40813 4.56255 4.63458 4.68234 4.78526 4.86189 4.92191 5.04349 5.16255 5.24678 5.28127 5.32106 5.36470 5.55051 5.71343 5.77747 5.86733 6.09178 6.25246 6.43574 6.86016 7.37608 7.56302 8.91737 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.085201 B = 0.002199 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.556561 B =12732.645562 C =12916.580906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.108 4.108 12 C 0.073 3.927 13 N -0.706 5.706 14 C 0.066 3.934 15 C -0.122 4.122 16 C 0.114 3.886 17 N -0.288 5.288 18 C -0.034 4.034 19 C -0.071 4.071 20 N -0.321 5.321 21 N -0.130 5.130 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.013 1.013 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.344 0.656 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.237 0.763 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -26.302 -5.364 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.146 4.146 12 C -0.056 4.056 13 N -0.338 5.338 14 C -0.063 4.063 15 C -0.160 4.160 16 C -0.007 4.007 17 N -0.082 5.082 18 C -0.186 4.186 19 C -0.229 4.229 20 N -0.186 5.186 21 N -0.110 5.110 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.005 0.995 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.165 0.835 38 H 0.254 0.746 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.330 -25.745 -3.387 27.593 hybrid contribution 0.656 0.843 -1.674 1.985 sum 9.985 -24.902 -5.061 27.303 Atomic orbital electron populations 1.70106 1.07900 1.27830 1.51696 1.26061 0.95830 1.03607 0.94775 0.85463 0.78229 0.77870 0.79258 1.18975 1.20899 1.19119 1.21727 0.93620 0.92473 1.50496 0.92016 1.19037 0.94580 0.93464 0.94513 1.21395 0.97934 0.93554 1.00588 1.21485 0.98188 0.93657 1.01299 1.21833 0.95111 0.87739 1.00897 1.60391 1.20681 1.01929 1.50797 1.21842 0.94079 0.88277 1.02142 1.21687 0.98306 0.92730 1.03316 1.22402 0.92941 0.77364 1.07951 1.47840 1.25763 1.16488 1.18105 1.24479 1.05427 0.88875 0.99793 1.24286 0.98269 1.03812 0.96523 1.75079 1.23624 1.03675 1.16176 1.78295 1.05191 1.10802 1.16672 0.92798 0.99277 0.99478 0.93019 0.92824 0.92930 0.93056 0.90919 0.94229 0.83847 0.90140 0.92839 0.91516 0.91868 0.87063 0.83527 0.74634 0.76805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.11 -3.59 5.47 30.59 0.17 -3.43 16 12 C 0.07 1.80 5.69 86.30 0.49 2.29 16 13 N -0.71 -15.00 6.50 -513.87 -3.34 -18.34 16 14 C 0.07 0.91 5.69 86.30 0.49 1.40 16 15 C -0.12 -1.59 5.60 30.60 0.17 -1.42 16 16 C 0.11 0.89 6.46 86.38 0.56 1.45 16 17 N -0.29 -4.24 3.44 -347.74 -1.20 -5.44 16 18 C -0.03 -0.33 11.57 83.49 0.97 0.63 16 19 C -0.07 -1.04 12.05 83.73 1.01 -0.03 16 20 N -0.32 -7.88 12.41 -58.26 -0.72 -8.61 16 21 N -0.13 -3.14 12.91 37.02 0.48 -2.66 16 22 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 25 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.34 6.92 8.73 -89.70 -0.78 6.14 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.22 8.12 -2.39 -0.02 1.21 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.15 -0.02 8.07 -2.39 -0.02 -0.04 16 38 H 0.24 -0.25 8.06 -2.91 -0.02 -0.27 16 39 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -77.15 331.41 2.61 -74.54 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 0.23 Total: 4.44 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 4.85 Total: -32.76 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -4.50 Total: -92.84 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -77.15 2.61 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.897 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds