Wall clock time and date at job start Mon Mar 30 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 N 1.46902 * 109.47225 * 240.00483 * 2 1 3 5 5 C 1.46901 * 111.00248 * 84.99616 * 4 2 1 6 6 C 1.52998 * 109.47178 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47260 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47272 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99800 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00074 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46974 * 60.00310 * 13 11 9 15 15 H 1.48504 * 109.47047 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47326 * 300.00118 * 13 11 9 17 17 C 1.50697 * 109.47476 * 120.00094 * 2 1 3 18 18 N 1.30519 * 126.34476 * 74.99974 * 17 2 1 19 19 N 1.28600 * 109.66808 * 179.73098 * 18 17 2 20 20 C 1.30516 * 109.67696 * 0.44987 * 19 18 17 21 21 N 1.35495 * 107.30468 * 359.55808 * 20 19 18 22 22 C 1.46499 * 126.97946 * 180.26092 * 21 20 19 23 23 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46994 * 299.99551 * 1 2 3 25 25 H 1.08997 * 109.47278 * 60.00186 * 1 2 3 26 26 H 1.00904 * 110.99657 * 321.04452 * 4 2 1 27 27 H 1.09006 * 109.46772 * 300.00074 * 5 4 2 28 28 H 1.09000 * 109.47139 * 59.99999 * 5 4 2 29 29 H 1.08999 * 109.47057 * 299.99962 * 6 5 4 30 30 H 1.09004 * 109.46688 * 60.00092 * 6 5 4 31 31 H 1.09006 * 109.46833 * 300.00100 * 7 6 5 32 32 H 1.09000 * 109.46996 * 59.99975 * 7 6 5 33 33 H 1.08994 * 109.47505 * 300.00037 * 8 7 6 34 34 H 1.09004 * 109.46688 * 60.00216 * 8 7 6 35 35 H 0.96993 * 120.00156 * 180.02562 * 12 11 9 36 36 H 1.08002 * 126.35125 * 179.82818 * 20 19 18 37 37 H 1.09004 * 109.47293 * 90.03308 * 22 21 20 38 38 H 1.09007 * 109.47309 * 210.02845 * 22 21 20 39 39 H 1.09000 * 109.47123 * 330.02746 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6597 0.4200 -4.7698 8 6 3.1717 -0.3359 -5.9975 9 6 3.2349 0.6026 -7.1750 10 1 2.9398 1.6350 -7.0591 11 6 3.6694 0.1432 -8.4002 12 7 4.0283 -1.1141 -8.5415 13 14 3.7484 1.3067 -9.8595 14 1 4.6710 2.4281 -9.5491 15 1 4.2452 0.5730 -11.0512 16 1 2.3924 1.8440 -10.1382 17 6 2.0324 -0.7104 1.2304 18 7 2.0337 -1.9998 1.4328 19 7 2.5397 -2.2563 2.5869 20 6 2.8753 -1.1416 3.1772 21 7 2.5664 -0.1289 2.3316 22 6 2.7687 1.3037 2.5614 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.4495 -1.4978 -1.4101 27 1 1.0869 0.6164 -2.5525 28 1 2.7587 1.0463 -2.1183 29 1 3.5903 -0.9270 -3.3692 30 1 1.9182 -1.3564 -3.8030 31 1 1.6641 0.8136 -4.9749 32 1 3.3362 1.2436 -4.5415 33 1 4.1671 -0.7299 -5.7927 34 1 2.4948 -1.1593 -6.2256 35 1 4.3343 -1.4372 -9.4033 36 1 3.3209 -1.0446 4.1561 37 1 3.7546 1.5943 2.1983 38 1 2.0041 1.8688 2.0281 39 1 2.6979 1.5141 3.6285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385332480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:50 Heat of formation + Delta-G solvation = 59.446842 kcal Electronic energy + Delta-G solvation = -17864.521776 eV Core-core repulsion = 15035.944937 eV Total energy + Delta-G solvation = -2828.576839 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.23826 -37.57094 -35.29199 -34.62839 -32.65871 -30.96402 -29.45458 -27.94509 -27.55074 -24.69177 -23.61718 -22.49093 -21.38537 -20.59177 -19.87829 -17.45549 -16.57862 -16.20837 -15.79076 -15.45841 -15.18852 -14.58663 -14.40781 -14.04482 -13.78519 -13.41942 -13.06574 -12.60861 -12.53051 -12.23163 -11.82897 -11.63655 -11.54816 -11.37675 -10.98772 -10.57032 -10.52183 -10.43853 -10.41705 -10.38967 -9.61546 -9.38612 -9.23075 -8.99484 -8.48194 -8.30550 -5.95610 -3.98207 1.63102 2.21939 2.80474 3.34926 3.39401 3.41538 3.93403 4.11988 4.27348 4.40331 4.49187 4.59078 4.62090 4.80306 4.90555 5.19037 5.25361 5.33795 5.39685 5.43487 5.55615 5.63641 5.79959 5.88816 6.02330 6.14746 6.22202 6.51105 6.61806 6.83149 6.92341 7.01055 7.22243 7.35008 7.73010 7.89366 8.05537 8.47639 8.64890 9.09257 9.65485 11.15705 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.044952 B = 0.003012 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.736258 B = 9294.487707 C = 9435.778261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.172 3.828 3 H 0.092 0.908 4 N -0.677 5.677 5 C 0.061 3.939 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.021 3.979 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.195 3.805 18 N -0.280 5.280 19 N -0.299 5.299 20 C 0.141 3.859 21 N -0.479 5.479 22 C 0.071 3.929 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.354 0.646 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 6.833 24.212 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.059 3.941 3 H 0.110 0.890 4 N -0.309 5.309 5 C -0.067 4.067 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.016 4.016 9 C -0.560 4.560 10 H 0.071 0.929 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.073 4.073 18 N -0.119 5.119 19 N -0.138 5.138 20 C -0.147 4.147 21 N -0.170 5.170 22 C -0.072 4.072 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.174 0.826 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.706 5.308 24.011 25.037 hybrid contribution -0.487 2.146 -0.656 2.296 sum -5.193 7.453 23.356 25.060 Atomic orbital electron populations 1.22482 0.94865 1.03694 1.02682 1.19682 0.93108 0.95811 0.85518 0.89038 1.60301 1.57650 1.10075 1.02885 1.22144 0.99368 0.95260 0.89923 1.21641 1.01617 0.98843 0.93322 1.21585 1.00099 0.97780 0.95140 1.19087 0.96315 0.95385 0.90833 1.21248 1.43689 0.96389 0.94665 0.92850 1.25034 0.95521 0.95076 0.98882 1.69957 1.44652 1.14370 1.24510 0.86675 0.78354 0.80961 0.82089 1.20292 1.21293 1.20290 1.24826 1.00459 0.91067 0.90986 1.74238 1.17459 1.10811 1.09413 1.74272 1.14191 1.23025 1.02283 1.26393 1.05054 0.83690 0.99517 1.46182 1.46694 1.09314 1.14833 1.22116 1.04053 0.76910 1.04122 0.91048 0.92213 0.90967 0.82599 0.95082 0.91319 0.91559 0.92441 0.93630 0.93510 0.96601 0.96663 0.92966 0.76733 0.89737 0.89165 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.17 1.77 2.90 -68.87 -0.20 1.57 16 3 H 0.09 0.78 6.89 -51.93 -0.36 0.42 16 4 N -0.68 -8.67 6.23 -107.95 -0.67 -9.34 16 5 C 0.06 0.82 5.48 -3.82 -0.02 0.79 16 6 C -0.12 -1.98 5.47 -26.73 -0.15 -2.12 16 7 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.20 2.33 6.87 -154.99 -1.07 1.26 16 18 N -0.28 -4.25 12.21 32.79 0.40 -3.85 16 19 N -0.30 -4.27 12.21 29.69 0.36 -3.91 16 20 C 0.14 1.36 12.74 -89.95 -1.15 0.21 16 21 N -0.48 -4.26 3.15 -122.69 -0.39 -4.64 16 22 C 0.07 0.28 10.84 59.85 0.65 0.93 16 23 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 26 H 0.35 4.61 8.47 -39.29 -0.33 4.28 16 27 H 0.03 0.38 7.44 -51.93 -0.39 0.00 16 28 H 0.07 0.88 8.06 -51.93 -0.42 0.47 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.22 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.26 7.46 -51.93 -0.39 -0.13 16 39 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -35.34 327.38 -8.38 -43.72 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.46 Total: -2.75 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.28 Total: -14.30 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.44 Total: -48.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.34 -8.38 -43.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385332480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.172 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds