Wall clock time and date at job start Mon Mar 30 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 N 1.46902 * 109.47225 * 240.00483 * 2 1 3 5 5 C 1.46901 * 111.00248 * 84.99616 * 4 2 1 6 6 C 1.52998 * 109.47178 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47260 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47272 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99800 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00074 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46974 * 60.00310 * 13 11 9 15 15 H 1.48504 * 109.47047 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47326 * 300.00118 * 13 11 9 17 17 C 1.50697 * 109.47476 * 120.00094 * 2 1 3 18 18 N 1.30519 * 126.34476 * 74.99974 * 17 2 1 19 19 N 1.28600 * 109.66808 * 179.73098 * 18 17 2 20 20 C 1.30516 * 109.67696 * 0.44987 * 19 18 17 21 21 N 1.35495 * 107.30468 * 359.55808 * 20 19 18 22 22 C 1.46499 * 126.97946 * 180.26092 * 21 20 19 23 23 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46994 * 299.99551 * 1 2 3 25 25 H 1.08997 * 109.47278 * 60.00186 * 1 2 3 26 26 H 1.00904 * 110.99657 * 321.04452 * 4 2 1 27 27 H 1.09006 * 109.46772 * 300.00074 * 5 4 2 28 28 H 1.09000 * 109.47139 * 59.99999 * 5 4 2 29 29 H 1.08999 * 109.47057 * 299.99962 * 6 5 4 30 30 H 1.09004 * 109.46688 * 60.00092 * 6 5 4 31 31 H 1.09006 * 109.46833 * 300.00100 * 7 6 5 32 32 H 1.09000 * 109.46996 * 59.99975 * 7 6 5 33 33 H 1.08994 * 109.47505 * 300.00037 * 8 7 6 34 34 H 1.09004 * 109.46688 * 60.00216 * 8 7 6 35 35 H 0.96993 * 120.00156 * 180.02562 * 12 11 9 36 36 H 1.08002 * 126.35125 * 179.82818 * 20 19 18 37 37 H 1.09004 * 109.47293 * 90.03308 * 22 21 20 38 38 H 1.09007 * 109.47309 * 210.02845 * 22 21 20 39 39 H 1.09000 * 109.47123 * 330.02746 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6597 0.4200 -4.7698 8 6 3.1717 -0.3359 -5.9975 9 6 3.2349 0.6026 -7.1750 10 1 2.9398 1.6350 -7.0591 11 6 3.6694 0.1432 -8.4002 12 7 4.0283 -1.1141 -8.5415 13 14 3.7484 1.3067 -9.8595 14 1 4.6710 2.4281 -9.5491 15 1 4.2452 0.5730 -11.0512 16 1 2.3924 1.8440 -10.1382 17 6 2.0324 -0.7104 1.2304 18 7 2.0337 -1.9998 1.4328 19 7 2.5397 -2.2563 2.5869 20 6 2.8753 -1.1416 3.1772 21 7 2.5664 -0.1289 2.3316 22 6 2.7687 1.3037 2.5614 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.4495 -1.4978 -1.4101 27 1 1.0869 0.6164 -2.5525 28 1 2.7587 1.0463 -2.1183 29 1 3.5903 -0.9270 -3.3692 30 1 1.9182 -1.3564 -3.8030 31 1 1.6641 0.8136 -4.9749 32 1 3.3362 1.2436 -4.5415 33 1 4.1671 -0.7299 -5.7927 34 1 2.4948 -1.1593 -6.2256 35 1 4.3343 -1.4372 -9.4033 36 1 3.3209 -1.0446 4.1561 37 1 3.7546 1.5943 2.1983 38 1 2.0041 1.8688 2.0281 39 1 2.6979 1.5141 3.6285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385332480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:50 Heat of formation + Delta-G solvation = 36.321725 kcal Electronic energy + Delta-G solvation = -17865.524556 eV Core-core repulsion = 15035.944937 eV Total energy + Delta-G solvation = -2829.579619 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.02223 -38.56077 -36.38953 -35.85492 -34.47121 -32.30400 -30.46054 -29.04290 -28.39449 -26.22348 -24.69916 -23.39166 -22.69933 -21.88063 -21.08841 -18.46200 -18.06232 -17.28044 -16.79965 -16.51408 -16.32855 -16.16295 -15.37975 -15.20663 -14.48445 -14.30456 -14.12691 -13.85035 -13.62071 -13.51449 -13.18622 -12.95566 -12.77712 -12.55805 -12.36400 -12.30226 -12.16879 -12.09217 -11.35891 -11.29938 -11.24643 -11.04443 -11.00721 -10.53982 -10.22280 -9.42465 -8.18500 -6.30552 0.90281 1.40227 1.43958 1.51889 1.62942 1.94839 2.41914 3.11402 3.14148 3.36444 3.75491 3.92113 3.95373 4.04755 4.15251 4.26582 4.40760 4.50171 4.51440 4.63796 4.65873 4.70139 4.80340 4.87467 4.92397 4.99617 5.14282 5.24868 5.27009 5.30711 5.38538 5.56915 5.79821 5.88328 5.95616 6.09214 6.26329 6.33472 6.87752 7.39022 7.82222 8.93367 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.044952 B = 0.003012 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.736258 B = 9294.487707 C = 9435.778261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.175 3.825 3 H 0.116 0.884 4 N -0.693 5.693 5 C 0.076 3.924 6 C -0.108 4.108 7 C -0.094 4.094 8 C 0.021 3.979 9 C -0.545 4.545 10 H 0.063 0.937 11 C -0.005 4.005 12 N -0.937 5.937 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.187 3.813 18 N -0.331 5.331 19 N -0.356 5.356 20 C 0.157 3.843 21 N -0.474 5.474 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.349 0.651 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.054 0.946 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.263 0.737 36 H 0.260 0.740 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 9.886 25.314 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.062 3.938 3 H 0.134 0.866 4 N -0.325 5.325 5 C -0.052 4.052 6 C -0.146 4.146 7 C -0.132 4.132 8 C -0.016 4.016 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.202 4.202 12 N -0.577 5.577 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.189 1.189 17 C -0.084 4.084 18 N -0.171 5.171 19 N -0.195 5.195 20 C -0.132 4.132 21 N -0.165 5.165 22 C -0.080 4.080 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.168 0.832 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.276 0.724 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.103 8.391 25.138 26.988 hybrid contribution -0.325 1.190 -0.923 1.541 sum -5.427 9.582 24.215 26.601 Atomic orbital electron populations 1.22402 0.93717 1.02935 1.03889 1.19811 0.93966 0.96287 0.83729 0.86649 1.60213 1.58445 1.10246 1.03578 1.21912 1.00260 0.94720 0.88353 1.21474 1.00801 0.98332 0.94039 1.21376 1.00309 0.97782 0.93758 1.19035 0.94244 0.94970 0.93366 1.21738 1.43641 0.97172 0.95696 0.91842 1.26060 0.94894 0.96868 1.02408 1.70112 1.45557 1.16595 1.25449 0.85468 0.79045 0.78630 0.77712 1.18993 1.21005 1.18946 1.25047 1.00494 0.90659 0.92166 1.74110 1.19362 1.13077 1.10539 1.74146 1.16656 1.25738 1.02947 1.27204 1.02760 0.82806 1.00413 1.46443 1.45393 1.11081 1.13572 1.22535 1.04920 0.73983 1.06538 0.92821 0.90565 0.90069 0.83181 0.93357 0.90200 0.93323 0.93123 0.92580 0.92727 0.99618 0.99440 0.92823 0.72411 0.89022 0.87812 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.14 71.98 0.66 -2.00 16 2 C 0.17 3.27 2.90 44.17 0.13 3.40 16 3 H 0.12 1.57 6.89 -2.38 -0.02 1.56 16 4 N -0.69 -17.17 6.23 -495.44 -3.09 -20.26 16 5 C 0.08 1.88 5.48 86.30 0.47 2.35 16 6 C -0.11 -3.69 5.47 30.59 0.17 -3.52 16 7 C -0.09 -3.81 5.15 30.59 0.16 -3.66 16 8 C 0.02 1.14 4.97 29.85 0.15 1.29 16 9 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 10 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 11 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 12 N -0.94 -58.69 13.29 21.45 0.28 -58.40 16 13 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 17 C 0.19 4.25 6.87 137.98 0.95 5.20 16 18 N -0.33 -10.25 12.21 -50.16 -0.61 -10.86 16 19 N -0.36 -10.24 12.21 -59.99 -0.73 -10.98 16 20 C 0.16 2.74 12.74 180.11 2.30 5.04 16 21 N -0.47 -7.35 3.15 -542.06 -1.71 -9.05 16 22 C 0.06 0.25 10.84 127.77 1.38 1.64 16 23 H 0.05 1.04 8.13 -2.38 -0.02 1.02 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.12 7.45 -2.39 -0.02 1.11 16 26 H 0.35 9.18 8.47 -89.69 -0.76 8.43 16 27 H 0.05 1.05 7.44 -2.38 -0.02 1.03 16 28 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 31 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 35 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.26 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.10 0.18 7.46 -2.38 -0.02 0.16 16 39 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -79.88 327.38 3.49 -76.39 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.26 Total: 7.87 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 7.06 Total: -21.41 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -5.85 Total: -109.56 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -79.88 3.49 -76.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385332480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.714 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds