Wall clock time and date at job start Mon Mar 30 2020 04:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46778 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47592 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 120.00315 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08994 * 110.64956 * 36.72348 * 14 13 12 16 16 C 1.55163 * 110.73264 * 273.54481 * 14 13 12 17 17 C 1.54838 * 101.65668 * 205.49310 * 16 14 13 18 18 N 1.47951 * 105.06741 * 36.67724 * 17 16 14 19 19 C 1.47946 * 109.41156 * 219.20461 * 18 17 16 20 20 C 1.54838 * 105.06782 * 140.79187 * 19 18 17 21 21 C 1.55153 * 101.65806 * 323.32783 * 20 19 18 22 22 C 1.47860 * 108.37530 * 337.18798 * 18 17 16 23 23 H 1.08994 * 110.78162 * 120.31433 * 22 18 17 24 24 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 28 28 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 30 30 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 32 32 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 33 33 H 1.00895 * 111.00438 * 303.95603 * 13 12 11 34 34 H 1.08998 * 110.99205 * 323.58930 * 16 14 13 35 35 H 1.08994 * 110.98454 * 87.40205 * 16 14 13 36 36 H 1.08996 * 110.32076 * 155.57308 * 17 16 14 37 37 H 1.08994 * 110.32316 * 277.67623 * 17 16 14 38 38 H 1.09000 * 110.32553 * 259.69411 * 19 18 17 39 39 H 1.09006 * 110.32227 * 21.89620 * 19 18 17 40 40 H 1.08995 * 110.99066 * 81.42405 * 20 19 18 41 41 H 1.09002 * 110.98807 * 205.19638 * 20 19 18 42 42 H 1.08999 * 110.73232 * 154.50595 * 21 20 19 43 43 H 1.09007 * 110.73659 * 277.80694 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0006 15 1 3.5426 -8.3479 0.6091 16 6 3.0778 -8.9344 -1.4483 17 6 3.4379 -10.4327 -1.2974 18 7 2.4631 -10.9660 -0.3206 19 6 3.1428 -11.9230 0.5800 20 6 2.5389 -11.6562 1.9805 21 6 2.3572 -10.1156 1.9553 22 6 1.9552 -9.8407 0.4929 23 1 0.8742 -9.7460 0.3899 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8718 -3.6043 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0445 0.8914 31 1 3.1005 -6.0923 -0.8900 32 1 3.1018 -6.0922 0.8900 33 1 1.1044 -7.4720 0.7838 34 1 2.2447 -8.8006 -2.1384 35 1 3.9440 -8.3549 -1.7675 36 1 3.3344 -10.9451 -2.2538 37 1 4.4540 -10.5415 -0.9185 38 1 2.9380 -12.9472 0.2682 39 1 4.2168 -11.7369 0.5891 40 1 1.5794 -12.1607 2.0946 41 1 3.2310 -11.9555 2.7676 42 1 1.5641 -9.8093 2.6375 43 1 3.2930 -9.6125 2.1993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385340030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:53 Heat of formation + Delta-G solvation = -17.907413 kcal Electronic energy + Delta-G solvation = -18390.385022 eV Core-core repulsion = 15661.994194 eV Total energy + Delta-G solvation = -2728.390828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37189 -36.55471 -34.44417 -33.37081 -32.15744 -30.27963 -28.20236 -27.79713 -25.09518 -23.83466 -21.79464 -21.55664 -20.57509 -20.18759 -19.74426 -16.69745 -16.30458 -16.08562 -15.59824 -14.71938 -14.52573 -14.39363 -14.23230 -13.77722 -13.29891 -13.05009 -12.68476 -12.37605 -12.24168 -11.86016 -11.71873 -11.61826 -11.47839 -11.20997 -11.11781 -11.00571 -10.88314 -10.70468 -10.50528 -10.46490 -10.40481 -9.61261 -9.24531 -9.00262 -8.68562 -8.41110 -8.30850 -5.96246 -3.98583 3.34916 3.39138 3.41648 3.70620 4.09242 4.19682 4.30121 4.48817 4.63862 4.76673 4.80497 5.00776 5.10095 5.12036 5.21990 5.36506 5.39140 5.44120 5.49424 5.54925 5.56557 5.58914 5.68854 5.78674 5.80672 5.91123 5.97411 6.06341 6.17705 6.30281 6.52970 6.65170 6.70435 6.84141 6.98109 7.06868 7.24814 7.40241 7.72431 7.88788 8.04898 8.47604 9.08766 9.65109 11.15081 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.053508 B = 0.002925 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.163935 B = 9571.805838 C = 9738.620300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.678 5.678 14 C 0.068 3.932 15 H 0.049 0.951 16 C -0.121 4.121 17 C 0.032 3.968 18 N -0.506 5.506 19 C 0.031 3.969 20 C -0.131 4.131 21 C -0.143 4.143 22 C 0.061 3.939 23 H 0.102 0.898 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.341 0.659 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -23.990 2.023 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.310 5.310 14 C -0.043 4.043 15 H 0.067 0.933 16 C -0.160 4.160 17 C -0.096 4.096 18 N -0.230 5.230 19 C -0.097 4.097 20 C -0.169 4.169 21 C -0.182 4.182 22 C -0.048 4.048 23 H 0.120 0.880 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.159 0.841 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.686 -24.157 1.048 24.839 hybrid contribution 1.507 1.433 1.356 2.483 sum 7.193 -22.724 2.404 23.956 Atomic orbital electron populations 1.69962 1.06042 1.26631 1.50931 1.25034 0.94849 0.99212 0.95421 0.86671 0.79591 0.83226 0.78576 1.20260 1.21283 1.20298 1.21257 0.92970 0.91257 1.50468 0.92851 1.19082 0.94011 0.91302 0.97155 1.21587 0.99083 0.94002 1.00017 1.21638 0.97862 0.93795 1.02030 1.22106 0.96218 0.88507 0.99986 1.60541 1.19381 1.01288 1.49750 1.22912 0.94248 0.90650 0.96488 0.93310 1.22802 1.01914 0.94196 0.97092 1.23281 0.93839 0.95203 0.97257 1.65497 1.31491 1.12290 1.13724 1.23317 0.96622 0.97835 0.91959 1.22740 1.01599 0.95803 0.96747 1.22976 1.01941 0.96393 0.96864 1.23165 1.00984 0.89406 0.91206 0.88028 0.92984 0.96596 0.96745 0.93753 0.93471 0.91591 0.92742 0.91320 0.95707 0.84106 0.89479 0.91197 0.90071 0.93437 0.90185 0.93307 0.90584 0.90927 0.90524 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.86 5.54 -3.82 -0.02 0.84 16 13 N -0.68 -8.50 6.31 -104.89 -0.66 -9.16 16 14 C 0.07 0.75 2.76 -65.97 -0.18 0.56 16 15 H 0.05 0.55 7.07 -51.93 -0.37 0.19 16 16 C -0.12 -1.29 6.70 -24.62 -0.16 -1.45 16 17 C 0.03 0.30 6.72 -2.28 -0.02 0.29 16 18 N -0.51 -5.07 5.75 -220.30 -1.27 -6.34 16 19 C 0.03 0.25 6.72 -2.28 -0.02 0.23 16 20 C -0.13 -0.97 7.07 -24.62 -0.17 -1.14 16 21 C -0.14 -1.21 6.47 -25.00 -0.16 -1.37 16 22 C 0.06 0.61 3.56 -65.99 -0.24 0.37 16 23 H 0.10 1.11 8.01 -51.93 -0.42 0.69 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.34 3.99 8.46 -39.29 -0.33 3.66 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.41 7.08 -51.93 -0.37 0.04 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.38 7.08 -51.93 -0.37 0.01 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 7.31 -51.93 -0.38 0.21 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -30.40 335.04 -11.08 -41.47 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.11 Total: -1.58 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.80 Total: -19.68 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -1.19 Total: -42.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.40 -11.08 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.567 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds