Wall clock time and date at job start Mon Mar 30 2020 04:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46778 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47592 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 120.00315 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08994 * 110.64956 * 36.72348 * 14 13 12 16 16 C 1.55163 * 110.73264 * 273.54481 * 14 13 12 17 17 C 1.54838 * 101.65668 * 205.49310 * 16 14 13 18 18 N 1.47951 * 105.06741 * 36.67724 * 17 16 14 19 19 C 1.47946 * 109.41156 * 219.20461 * 18 17 16 20 20 C 1.54838 * 105.06782 * 140.79187 * 19 18 17 21 21 C 1.55153 * 101.65806 * 323.32783 * 20 19 18 22 22 C 1.47860 * 108.37530 * 337.18798 * 18 17 16 23 23 H 1.08994 * 110.78162 * 120.31433 * 22 18 17 24 24 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 28 28 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 30 30 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 32 32 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 33 33 H 1.00895 * 111.00438 * 303.95603 * 13 12 11 34 34 H 1.08998 * 110.99205 * 323.58930 * 16 14 13 35 35 H 1.08994 * 110.98454 * 87.40205 * 16 14 13 36 36 H 1.08996 * 110.32076 * 155.57308 * 17 16 14 37 37 H 1.08994 * 110.32316 * 277.67623 * 17 16 14 38 38 H 1.09000 * 110.32553 * 259.69411 * 19 18 17 39 39 H 1.09006 * 110.32227 * 21.89620 * 19 18 17 40 40 H 1.08995 * 110.99066 * 81.42405 * 20 19 18 41 41 H 1.09002 * 110.98807 * 205.19638 * 20 19 18 42 42 H 1.08999 * 110.73232 * 154.50595 * 21 20 19 43 43 H 1.09007 * 110.73659 * 277.80694 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0006 15 1 3.5426 -8.3479 0.6091 16 6 3.0778 -8.9344 -1.4483 17 6 3.4379 -10.4327 -1.2974 18 7 2.4631 -10.9660 -0.3206 19 6 3.1428 -11.9230 0.5800 20 6 2.5389 -11.6562 1.9805 21 6 2.3572 -10.1156 1.9553 22 6 1.9552 -9.8407 0.4929 23 1 0.8742 -9.7460 0.3899 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8718 -3.6043 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0445 0.8914 31 1 3.1005 -6.0923 -0.8900 32 1 3.1018 -6.0922 0.8900 33 1 1.1044 -7.4720 0.7838 34 1 2.2447 -8.8006 -2.1384 35 1 3.9440 -8.3549 -1.7675 36 1 3.3344 -10.9451 -2.2538 37 1 4.4540 -10.5415 -0.9185 38 1 2.9380 -12.9472 0.2682 39 1 4.2168 -11.7369 0.5891 40 1 1.5794 -12.1607 2.0946 41 1 3.2310 -11.9555 2.7676 42 1 1.5641 -9.8093 2.6375 43 1 3.2930 -9.6125 2.1993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385340030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:53 Heat of formation + Delta-G solvation = -37.862129 kcal Electronic energy + Delta-G solvation = -18391.250323 eV Core-core repulsion = 15661.994194 eV Total energy + Delta-G solvation = -2729.256129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12847 -37.73972 -35.98178 -34.58637 -33.71261 -31.47519 -29.33635 -28.92478 -26.49289 -25.10686 -23.10191 -22.42186 -21.84058 -21.31379 -20.71805 -18.43682 -17.49695 -16.96179 -16.74154 -16.52063 -15.74486 -15.46897 -15.17568 -14.68990 -14.43129 -14.17792 -14.14278 -13.65311 -13.44506 -13.33979 -12.88728 -12.76954 -12.62035 -12.40376 -12.28744 -12.21670 -12.12428 -12.01880 -11.77532 -11.67132 -11.42071 -11.35979 -11.31326 -10.97818 -10.55376 -9.42255 -9.40654 -8.20168 -6.31964 1.39025 1.42551 1.50568 2.40569 2.94338 3.12372 3.18120 3.44379 3.61527 3.88979 4.02449 4.11535 4.14978 4.21194 4.25318 4.32461 4.44539 4.51786 4.54480 4.62450 4.68305 4.81060 4.88073 4.88938 4.92426 4.96242 4.97887 5.05053 5.12948 5.21049 5.24156 5.27704 5.31321 5.36076 5.54395 5.77395 5.86401 5.91956 6.00926 6.10876 6.25281 6.42484 6.85548 7.37383 8.91575 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.053508 B = 0.002925 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.163935 B = 9571.805838 C = 9738.620300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.074 3.926 13 N -0.684 5.684 14 C 0.070 3.930 15 H 0.051 0.949 16 C -0.122 4.122 17 C 0.036 3.964 18 N -0.522 5.522 19 C 0.028 3.972 20 C -0.126 4.126 21 C -0.141 4.141 22 C 0.063 3.937 23 H 0.089 0.911 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.345 0.655 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -24.648 2.542 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.055 4.055 13 N -0.315 5.315 14 C -0.041 4.041 15 H 0.069 0.931 16 C -0.161 4.161 17 C -0.092 4.092 18 N -0.246 5.246 19 C -0.099 4.099 20 C -0.164 4.164 21 C -0.180 4.180 22 C -0.046 4.046 23 H 0.107 0.893 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.164 0.836 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.318 -24.838 1.568 25.941 hybrid contribution 0.952 1.604 1.177 2.205 sum 8.270 -23.234 2.745 24.814 Atomic orbital electron populations 1.70103 1.07871 1.27862 1.51655 1.26030 0.95806 1.03500 0.94701 0.85485 0.78275 0.77962 0.79238 1.19131 1.20750 1.19058 1.21726 0.93577 0.92564 1.50620 0.92185 1.19012 0.94494 0.93267 0.94599 1.21393 0.97977 0.93704 1.00401 1.21459 0.98020 0.93288 1.01525 1.21853 0.95230 0.88096 1.00321 1.60479 1.19761 1.01084 1.50220 1.22928 0.94000 0.90346 0.96788 0.93146 1.22783 1.01421 0.95353 0.96529 1.23266 0.94229 0.94158 0.97511 1.65488 1.32219 1.12533 1.14344 1.23386 0.96854 0.97656 0.92020 1.22737 1.02006 0.94887 0.96774 1.22954 1.02010 0.97265 0.95744 1.23083 1.00169 0.88985 0.92322 0.89269 0.92742 0.99323 0.99184 0.93110 0.93165 0.92701 0.92711 0.91352 0.94972 0.83570 0.91067 0.90900 0.89660 0.92408 0.89567 0.92730 0.90516 0.89430 0.90045 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.28 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.04 5.15 30.59 0.16 -3.88 16 11 C -0.10 -3.60 5.47 30.60 0.17 -3.43 16 12 C 0.07 2.03 5.54 86.31 0.48 2.51 16 13 N -0.68 -16.52 6.31 -485.75 -3.07 -19.58 16 14 C 0.07 1.45 2.76 46.04 0.13 1.58 16 15 H 0.05 1.05 7.07 -2.39 -0.02 1.04 16 16 C -0.12 -2.48 6.70 31.96 0.21 -2.27 16 17 C 0.04 0.63 6.72 86.73 0.58 1.21 16 18 N -0.52 -9.70 5.75 -850.90 -4.90 -14.60 16 19 C 0.03 0.41 6.72 86.73 0.58 0.99 16 20 C -0.13 -1.59 7.07 31.96 0.23 -1.37 16 21 C -0.14 -2.13 6.47 31.72 0.21 -1.92 16 22 C 0.06 1.19 3.56 45.50 0.16 1.35 16 23 H 0.09 1.89 8.01 -2.39 -0.02 1.87 16 24 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 32 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.35 7.79 8.46 -89.70 -0.76 7.03 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.06 0.88 7.08 -2.39 -0.02 0.87 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.72 7.08 -2.38 -0.02 0.70 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.04 7.31 -2.38 -0.02 1.02 16 Total: -1.00 -64.91 335.04 -1.71 -66.62 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.19 Total: 13.84 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.75 Total: -35.28 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -7.68 Total: -92.11 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.91 -1.71 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds