Wall clock time and date at job start Mon Mar 30 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.47483 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00045 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.25234 * 324.42369 * 14 13 12 16 16 C 1.54558 * 110.28834 * 86.45365 * 14 13 12 17 17 C 1.54995 * 102.95986 * 140.24453 * 16 14 13 18 18 N 1.48270 * 103.01637 * 322.34095 * 17 16 14 19 19 C 1.47255 * 110.66180 * 155.70287 * 18 17 16 20 20 C 1.53751 * 106.55000 * 274.96726 * 19 18 17 21 21 C 1.53875 * 105.65370 * 341.85270 * 20 19 18 22 22 C 1.48428 * 105.72159 * 40.30818 * 18 17 16 23 23 H 1.09000 * 111.60454 * 211.16011 * 22 18 17 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 32 32 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 33 33 H 1.00905 * 110.99695 * 56.04346 * 13 12 11 34 34 H 1.08999 * 110.71822 * 258.61683 * 16 14 13 35 35 H 1.09004 * 110.71902 * 21.87641 * 16 14 13 36 36 H 1.08995 * 110.71018 * 80.72296 * 17 16 14 37 37 H 1.09000 * 110.70985 * 203.78428 * 17 16 14 38 38 H 1.09004 * 110.03546 * 34.23710 * 19 18 17 39 39 H 1.08998 * 110.04082 * 155.63830 * 19 18 17 40 40 H 1.09001 * 110.21600 * 100.90483 * 20 19 18 41 41 H 1.09003 * 110.20943 * 222.72883 * 20 19 18 42 42 H 1.09004 * 110.16157 * 119.52335 * 21 20 19 43 43 H 1.08994 * 110.16664 * 241.30620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 7 7.5303 -4.0795 0.0010 14 6 8.0566 -5.4509 0.0009 15 1 7.4151 -6.1013 0.5954 16 6 8.1655 -5.9830 -1.4461 17 6 9.5034 -6.7653 -1.4291 18 7 10.3676 -5.9300 -0.5608 19 6 11.4383 -6.7418 0.0418 20 6 10.8439 -7.3804 1.3078 21 6 9.5904 -6.5526 1.6411 22 6 9.4973 -5.4706 0.5503 23 1 9.7992 -4.4897 0.9173 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 5.9147 -2.1229 -0.8901 30 1 5.9147 -2.1231 0.8899 31 1 5.6979 -4.5928 0.8906 32 1 5.6979 -4.5935 -0.8894 33 1 7.8916 -3.5531 0.7824 34 1 7.3329 -6.6479 -1.6761 35 1 8.2099 -5.1586 -2.1579 36 1 9.3652 -7.7561 -0.9964 37 1 9.9192 -6.8398 -2.4339 38 1 11.7553 -7.5181 -0.6547 39 1 12.2850 -6.1076 0.3045 40 1 10.5698 -8.4174 1.1134 41 1 11.5602 -7.3282 2.1278 42 1 8.7041 -7.1868 1.6178 43 1 9.6959 -6.0892 2.6220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385340031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:56 Heat of formation + Delta-G solvation = -13.945685 kcal Electronic energy + Delta-G solvation = -18446.639361 eV Core-core repulsion = 15718.420326 eV Total energy + Delta-G solvation = -2728.219034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55959 -36.68010 -34.52431 -33.08187 -32.09768 -30.55971 -28.51233 -28.23288 -25.32535 -23.81503 -21.54200 -21.29627 -20.80001 -20.23979 -19.86885 -16.68786 -16.52705 -15.95488 -15.57856 -15.13835 -14.50262 -14.34097 -14.06562 -13.87421 -13.81410 -13.03273 -12.68290 -12.57443 -12.16456 -11.84430 -11.78635 -11.74763 -11.48810 -11.33248 -11.26909 -11.12505 -10.96146 -10.73951 -10.64906 -10.50885 -9.84587 -9.64677 -9.44388 -9.11630 -8.83858 -8.49613 -8.40539 -6.00392 -3.97859 3.34560 3.41415 3.46170 3.72184 4.07696 4.15258 4.28685 4.49489 4.63020 4.71886 4.74607 4.95038 5.08305 5.14059 5.20628 5.31526 5.34500 5.38559 5.44583 5.51038 5.54995 5.58485 5.64781 5.68078 5.75704 5.84579 5.89985 6.05526 6.10778 6.19887 6.41003 6.56712 6.70011 6.70266 6.80377 6.94660 7.14045 7.37344 7.39153 7.51190 7.85099 8.59035 9.04931 9.62751 11.13274 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051805 B = 0.003053 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.363738 B = 9168.881615 C = 9236.558232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.060 3.940 13 N -0.681 5.681 14 C 0.080 3.920 15 H 0.050 0.950 16 C -0.115 4.115 17 C 0.030 3.970 18 N -0.494 5.494 19 C 0.032 3.968 20 C -0.151 4.151 21 C -0.148 4.148 22 C 0.058 3.942 23 H 0.102 0.898 24 H 0.262 0.738 25 H 0.011 0.989 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.340 0.660 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.115 -15.361 1.409 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.069 4.069 13 N -0.312 5.312 14 C -0.030 4.030 15 H 0.068 0.932 16 C -0.154 4.154 17 C -0.098 4.098 18 N -0.216 5.216 19 C -0.097 4.097 20 C -0.190 4.190 21 C -0.188 4.188 22 C -0.051 4.051 23 H 0.120 0.880 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.263 -14.712 0.387 27.528 hybrid contribution -0.250 -0.131 1.457 1.484 sum 23.013 -14.843 1.844 27.447 Atomic orbital electron populations 1.69925 1.06326 1.26814 1.51490 1.25055 0.94743 0.99241 0.94637 0.86750 0.80337 0.83516 0.78519 1.20288 1.21486 1.18991 1.21198 0.89730 0.94384 1.50456 0.91160 1.19569 0.96911 0.92505 0.96153 1.21411 0.91863 0.99767 1.00877 1.21666 0.97441 0.94541 1.01948 1.22095 0.86177 0.98458 1.00188 1.60616 1.08383 1.12309 1.49893 1.22612 0.93489 0.90439 0.96487 0.93173 1.22614 0.95869 0.99834 0.97065 1.23267 0.93410 0.94987 0.98127 1.66131 1.08789 1.31822 1.14838 1.22891 0.95936 0.96288 0.94540 1.22633 0.97505 0.99748 0.99118 1.22843 0.98345 0.97638 0.99949 1.23378 0.92304 0.99058 0.90329 0.88037 0.92818 0.97053 0.96790 0.93112 0.92869 0.91595 0.92774 0.95550 0.91177 0.84188 0.91469 0.89276 0.93816 0.89951 0.91025 0.90195 0.91734 0.91027 0.91295 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.02 5.15 -26.74 -0.14 -2.16 16 11 C -0.12 -1.91 5.47 -26.74 -0.15 -2.06 16 12 C 0.06 0.81 5.52 -3.82 -0.02 0.79 16 13 N -0.68 -8.22 6.28 -105.20 -0.66 -8.88 16 14 C 0.08 0.84 2.88 -66.27 -0.19 0.65 16 15 H 0.05 0.53 6.81 -51.93 -0.35 0.18 16 16 C -0.12 -1.18 6.69 -24.86 -0.17 -1.35 16 17 C 0.03 0.27 6.20 -2.01 -0.01 0.26 16 18 N -0.49 -4.82 5.84 -220.86 -1.29 -6.11 16 19 C 0.03 0.25 6.58 -3.24 -0.02 0.23 16 20 C -0.15 -1.05 6.59 -25.89 -0.17 -1.22 16 21 C -0.15 -1.18 6.32 -25.79 -0.16 -1.34 16 22 C 0.06 0.55 3.80 -65.76 -0.25 0.30 16 23 H 0.10 1.01 7.59 -51.93 -0.39 0.61 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.35 8.07 -51.93 -0.42 -0.06 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.34 3.81 8.11 -39.29 -0.32 3.49 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 36 H 0.04 0.36 7.70 -51.93 -0.40 -0.04 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.56 7.11 -51.93 -0.37 0.19 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -31.05 330.61 -10.77 -41.82 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.08 Total: -1.54 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.82 Total: -20.10 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -1.18 Total: -42.74 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.05 -10.77 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds