Wall clock time and date at job start Mon Mar 30 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99940 * 2 1 4 4 H 1.48502 * 109.46835 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47250 * 299.99740 * 3 2 1 6 6 H 1.48500 * 109.46885 * 59.99976 * 3 2 1 7 7 C 1.37878 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99830 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47079 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46643 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99489 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.14513 * 325.70311 * 14 13 12 16 16 C 1.53886 * 110.16413 * 87.43443 * 14 13 12 17 17 C 1.53615 * 105.67362 * 117.84294 * 16 14 13 18 18 N 1.47865 * 106.90117 * 17.97920 * 17 16 14 19 19 C 1.47885 * 108.84737 * 215.89409 * 18 17 16 20 20 C 1.54265 * 107.42498 * 111.32286 * 19 18 17 21 21 C 1.55255 * 103.10627 * 339.27375 * 20 19 18 22 22 C 1.48342 * 106.51508 * 331.78945 * 18 17 16 23 23 H 1.09009 * 111.43706 * 149.33885 * 22 18 17 24 24 H 0.97001 * 119.99920 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46399 * 59.99874 * 9 7 2 26 26 H 1.09000 * 109.46871 * 300.00292 * 9 7 2 27 27 H 1.09004 * 109.47439 * 60.00703 * 10 9 7 28 28 H 1.09000 * 109.47652 * 300.00006 * 10 9 7 29 29 H 1.08997 * 109.47495 * 59.99940 * 11 10 9 30 30 H 1.09003 * 109.46589 * 299.99814 * 11 10 9 31 31 H 1.08996 * 109.46979 * 60.00055 * 12 11 10 32 32 H 1.08998 * 109.47044 * 300.00027 * 12 11 10 33 33 H 1.00894 * 111.00240 * 303.94767 * 13 12 11 34 34 H 1.09006 * 110.20413 * 236.88903 * 16 14 13 35 35 H 1.08996 * 110.21370 * 358.70659 * 16 14 13 36 36 H 1.08997 * 109.98313 * 137.34118 * 17 16 14 37 37 H 1.09004 * 109.97165 * 258.62298 * 17 16 14 38 38 H 1.09005 * 109.85208 * 230.78718 * 19 18 17 39 39 H 1.08998 * 109.85920 * 351.85490 * 19 18 17 40 40 H 1.09003 * 110.69285 * 97.67797 * 20 19 18 41 41 H 1.08998 * 110.69073 * 220.69974 * 20 19 18 42 42 H 1.09004 * 111.06543 * 153.88496 * 21 20 19 43 43 H 1.08996 * 111.06316 * 277.89582 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 7 1.7400 -7.4222 0.0005 14 6 2.6645 -8.5638 0.0005 15 1 3.5578 -8.3235 -0.5761 16 6 3.0486 -8.9353 1.4436 17 6 2.5367 -10.3684 1.6535 18 7 2.3006 -10.9414 0.3110 19 6 1.1127 -11.8203 0.3688 20 6 -0.0057 -11.1398 -0.4472 21 6 0.4413 -9.6535 -0.4858 22 6 1.9766 -9.8025 -0.5826 23 1 2.3030 -9.9931 -1.6051 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8539 -5.0446 -0.8903 30 1 0.8533 -5.0450 0.8897 31 1 3.1005 -6.0923 0.8910 32 1 3.1019 -6.0922 -0.8890 33 1 1.1034 -7.4721 0.7817 34 1 4.1312 -8.9006 1.5659 35 1 2.5687 -8.2559 2.1479 36 1 3.2852 -10.9575 2.1833 37 1 1.6057 -10.3519 2.2202 38 1 1.3494 -12.7917 -0.0655 39 1 0.7933 -11.9436 1.4037 40 1 -0.0539 -11.5537 -1.4544 41 1 -0.9669 -11.2426 0.0564 42 1 0.0408 -9.1466 -1.3638 43 1 0.1550 -9.1344 0.4288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385340033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:59 Heat of formation + Delta-G solvation = -13.765318 kcal Electronic energy + Delta-G solvation = -18567.855261 eV Core-core repulsion = 15839.644048 eV Total energy + Delta-G solvation = -2728.211213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56055 -36.60801 -34.46472 -33.14009 -32.10724 -30.16308 -28.34257 -27.65081 -25.38043 -24.10328 -21.64479 -21.20051 -20.90550 -20.15849 -19.54647 -16.94677 -16.23007 -15.89519 -15.32759 -14.89701 -14.44738 -14.28510 -13.98842 -13.86706 -13.61856 -13.08766 -12.45278 -12.39458 -12.06339 -11.98435 -11.75021 -11.61362 -11.46792 -11.27334 -11.08018 -10.99885 -10.71172 -10.58604 -10.54413 -10.45688 -10.39930 -9.62556 -9.25300 -8.98971 -8.74513 -8.37692 -8.32101 -5.97343 -3.99436 3.32137 3.39425 3.43767 3.73148 4.16416 4.25870 4.47468 4.54495 4.74990 4.81690 4.81792 4.88972 5.14590 5.23307 5.27609 5.37825 5.38588 5.47794 5.53097 5.57969 5.64225 5.67353 5.75303 5.84774 5.88603 5.92943 6.00954 6.14600 6.18155 6.26315 6.51267 6.62751 6.68343 6.83299 6.97364 7.06546 7.24092 7.38361 7.72036 7.87670 8.03904 8.46884 9.08367 9.64489 11.14061 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.052679 B = 0.003065 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.398433 B = 9131.840945 C = 9425.671218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.059 3.941 13 N -0.680 5.680 14 C 0.085 3.915 15 H 0.086 0.914 16 C -0.159 4.159 17 C 0.033 3.967 18 N -0.502 5.502 19 C 0.029 3.971 20 C -0.149 4.149 21 C -0.125 4.125 22 C 0.066 3.934 23 H 0.097 0.903 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.339 0.661 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -23.292 1.619 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.070 4.070 13 N -0.311 5.311 14 C -0.027 4.027 15 H 0.104 0.896 16 C -0.199 4.199 17 C -0.096 4.096 18 N -0.225 5.225 19 C -0.099 4.099 20 C -0.187 4.187 21 C -0.164 4.164 22 C -0.043 4.043 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.887 -23.505 0.751 23.693 hybrid contribution 0.032 1.438 1.306 1.943 sum 2.918 -22.067 2.057 22.354 Atomic orbital electron populations 1.69977 1.06050 1.26402 1.51145 1.25038 0.94846 0.99247 0.95441 0.86558 0.80130 0.83891 0.77559 1.19762 1.21008 1.21051 1.21333 0.93054 0.91217 1.50166 0.92728 1.19093 0.94030 0.91378 0.97124 1.21586 0.99070 0.93962 1.00068 1.21634 0.97872 0.93898 1.01898 1.22110 0.96253 0.88438 1.00150 1.60654 1.19119 1.01363 1.49938 1.22080 0.95192 0.90964 0.94417 0.89604 1.22994 1.02223 0.96567 0.98123 1.22978 1.00216 0.94801 0.91588 1.66329 1.34325 1.14971 1.06885 1.23170 0.89282 0.97653 0.99845 1.22918 0.98539 0.96492 1.00793 1.22830 0.95388 0.94986 1.03198 1.23146 0.94534 0.88778 0.97822 0.88516 0.93110 0.96616 0.96777 0.93719 0.93432 0.91652 0.92899 0.95547 0.91207 0.84145 0.90884 0.91129 0.90472 0.93600 0.90535 0.92235 0.91127 0.91256 0.89960 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 12 C 0.06 0.81 5.52 -3.82 -0.02 0.79 16 13 N -0.68 -8.05 5.10 -106.11 -0.54 -8.59 16 14 C 0.08 0.90 3.19 -67.13 -0.21 0.68 16 15 H 0.09 0.95 7.83 -51.93 -0.41 0.55 16 16 C -0.16 -1.53 6.56 -25.95 -0.17 -1.70 16 17 C 0.03 0.30 6.31 -2.97 -0.02 0.28 16 18 N -0.50 -4.98 5.96 -221.51 -1.32 -6.31 16 19 C 0.03 0.25 6.76 -2.62 -0.02 0.23 16 20 C -0.15 -1.22 6.93 -24.87 -0.17 -1.40 16 21 C -0.12 -1.20 5.38 -24.72 -0.13 -1.33 16 22 C 0.07 0.67 3.93 -65.98 -0.26 0.41 16 23 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.34 3.88 6.95 -39.29 -0.27 3.61 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.69 7.61 -51.93 -0.40 0.29 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.41 7.21 -51.93 -0.37 0.03 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.47 7.06 -51.93 -0.37 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.69 6.69 -51.93 -0.35 0.34 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -29.90 331.40 -11.03 -40.93 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.04 Total: -1.39 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.84 Total: -19.92 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.13 Total: -41.53 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.90 -11.03 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.169 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds