Wall clock time and date at job start Mon Mar 30 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 H 1.09001 * 109.46834 * 54.81596 * 3 2 1 5 5 C 1.50695 * 109.47304 * 174.82006 * 3 2 1 6 6 H 1.07996 * 120.00179 * 119.99840 * 5 3 2 7 7 C 1.37883 * 119.99684 * 299.99561 * 5 3 2 8 8 N 1.31511 * 120.00384 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99708 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46998 * 60.00675 * 9 7 5 11 11 H 1.48504 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47748 * 300.00559 * 9 7 5 13 13 N 1.46902 * 109.46814 * 294.82011 * 3 2 1 14 14 C 1.46899 * 111.00118 * 153.84642 * 13 3 2 15 15 C 1.52996 * 109.47395 * 175.13068 * 14 13 3 16 16 C 1.53004 * 109.47250 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46977 * 180.02562 * 16 15 14 18 18 N 1.30524 * 126.34341 * 269.95841 * 17 16 15 19 19 N 1.28596 * 109.67225 * 180.02562 * 18 17 16 20 20 C 1.30521 * 109.67022 * 359.71735 * 19 18 17 21 21 N 1.35487 * 126.34615 * 90.00343 * 17 16 15 22 22 C 1.46503 * 126.98370 * 359.96030 * 21 17 16 23 23 H 1.08999 * 109.47473 * 306.25726 * 1 2 3 24 24 H 1.09007 * 109.46890 * 66.25633 * 1 2 3 25 25 H 1.08995 * 109.47382 * 186.25055 * 1 2 3 26 26 H 1.08998 * 109.47255 * 239.99620 * 2 1 3 27 27 H 1.09006 * 109.47029 * 119.99733 * 2 1 3 28 28 H 0.96998 * 120.00242 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00396 * 29.89191 * 13 3 2 30 30 H 1.09009 * 109.46827 * 55.13232 * 14 13 3 31 31 H 1.08999 * 109.46995 * 295.13576 * 14 13 3 32 32 H 1.08999 * 109.47094 * 60.00064 * 15 14 13 33 33 H 1.08999 * 109.47464 * 300.00221 * 15 14 13 34 34 H 1.08999 * 109.46989 * 60.00038 * 16 15 14 35 35 H 1.08999 * 109.47098 * 300.00482 * 16 15 14 36 36 H 1.08004 * 126.34607 * 180.29870 * 20 19 18 37 37 H 1.08993 * 109.47169 * 90.00179 * 22 21 17 38 38 H 1.08995 * 109.46870 * 330.00070 * 22 21 17 39 39 H 1.08999 * 109.46804 * 210.00568 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5415 1.4444 0.1283 6 1 4.1491 1.8881 -0.6465 7 6 4.1395 0.8797 1.2349 8 7 3.3997 0.3390 2.1782 9 14 6.0008 0.8815 1.3936 10 1 6.4963 2.2814 1.3932 11 1 6.3899 0.2185 2.6642 12 1 6.5959 0.1455 0.2493 13 7 1.6551 2.0979 -1.2571 14 6 1.5491 3.5525 -1.0815 15 6 1.2669 4.2103 -2.4337 16 6 1.1559 5.7253 -2.2506 17 6 0.8773 6.3731 -3.5825 18 7 1.7674 6.8024 -4.4352 19 7 1.1770 7.2984 -5.4643 20 6 -0.1163 7.2026 -5.3176 21 7 -0.3436 6.6185 -4.1163 22 6 -1.6451 6.3088 -3.5191 23 1 -0.3634 0.6078 0.8287 24 1 -0.3633 0.4138 -0.9407 25 1 -0.3634 -1.0215 0.1119 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8205 -0.0586 2.9565 29 1 0.7942 1.7135 -1.6166 30 1 2.4851 3.9388 -0.6778 31 1 0.7358 3.7768 -0.3914 32 1 0.3310 3.8239 -2.8373 33 1 2.0802 3.9859 -3.1238 34 1 2.0916 6.1119 -1.8468 35 1 0.3423 5.9492 -1.5607 36 1 -0.8665 7.5308 -6.0219 37 1 -1.9800 7.1548 -2.9190 38 1 -1.5532 5.4272 -2.8848 39 1 -2.3702 6.1140 -4.3092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390191625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:35 Heat of formation + Delta-G solvation = 64.456973 kcal Electronic energy + Delta-G solvation = -18311.861978 eV Core-core repulsion = 15483.502395 eV Total energy + Delta-G solvation = -2828.359583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.16816 -36.79857 -35.33940 -34.42748 -32.21767 -31.19276 -29.39075 -27.88272 -26.76397 -24.88857 -22.72447 -22.44774 -21.17172 -20.62323 -19.46858 -17.24061 -16.43490 -16.29778 -15.60045 -15.02466 -14.85837 -14.39329 -13.91837 -13.78378 -13.67873 -13.06885 -12.88241 -12.53891 -12.29977 -11.84547 -11.55798 -11.51689 -11.22030 -11.04854 -10.77624 -10.63001 -10.48934 -10.33468 -10.32314 -9.94484 -9.69985 -9.63567 -9.17763 -9.07409 -8.32835 -7.23167 -5.95294 -3.99231 1.71291 2.34319 2.85177 3.37111 3.40627 3.45203 4.21016 4.33325 4.43803 4.47394 4.70807 4.85548 5.00066 5.04798 5.33751 5.37359 5.43566 5.66620 5.68425 5.89991 5.96430 6.06439 6.11730 6.13601 6.15661 6.38052 6.56801 6.64661 6.72915 6.81365 7.06423 7.18127 7.48463 7.77693 7.93469 8.30469 8.40226 8.69511 8.76028 9.08940 9.65973 11.10095 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.004301 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.324503 B = 6509.279500 C = 7304.508343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.687 5.687 14 C 0.070 3.930 15 C -0.108 4.108 16 C -0.035 4.035 17 C 0.190 3.810 18 N -0.295 5.295 19 N -0.299 5.299 20 C 0.139 3.861 21 N -0.479 5.479 22 C 0.071 3.929 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.260 0.740 29 H 0.315 0.685 30 H 0.078 0.922 31 H 0.013 0.987 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 9.904 -8.153 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.147 4.147 16 C -0.075 4.075 17 C -0.077 4.077 18 N -0.134 5.134 19 N -0.138 5.138 20 C -0.149 4.149 21 N -0.170 5.170 22 C -0.072 4.072 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.279 10.169 -8.826 17.565 hybrid contribution -1.350 -0.241 1.129 1.776 sum -12.629 9.928 -7.697 17.813 Atomic orbital electron populations 1.21878 0.99696 0.99717 0.99389 1.21780 0.91138 1.00456 1.03139 1.19151 0.95487 0.89892 0.84268 0.98085 1.21194 0.91231 1.36414 1.04399 0.92029 1.24954 0.98147 0.95607 0.95804 1.69857 1.34836 1.39424 1.09691 0.86607 0.85750 0.78215 0.77101 1.20348 1.21507 1.20284 1.60647 1.36082 1.01826 1.33248 1.21784 1.00405 0.90422 0.93418 1.21564 1.02129 0.91152 0.99881 1.20136 1.04168 0.95835 0.87395 1.25091 0.80799 1.01949 0.99864 1.74308 1.25815 1.14227 0.99083 1.74240 1.03295 1.18140 1.18158 1.26378 0.97402 1.02094 0.89010 1.46225 1.08575 1.45743 1.16482 1.22124 0.81523 1.03346 1.00198 0.93951 0.94704 0.94385 0.94020 0.88224 0.93061 0.86842 0.90397 0.96863 0.93035 0.90314 0.87874 0.90204 0.76782 0.89966 0.88736 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.63 37.16 0.36 -2.44 16 2 C -0.13 -2.94 5.35 -26.73 -0.14 -3.08 16 3 C 0.22 5.35 2.03 -68.87 -0.14 5.21 16 4 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 5 C -0.49 -13.55 8.60 -34.44 -0.30 -13.85 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.37 11.29 55.43 0.63 -24.74 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.69 -14.11 6.27 -107.95 -0.68 -14.79 16 14 C 0.07 1.22 5.45 -3.83 -0.02 1.19 16 15 C -0.11 -1.52 5.50 -26.73 -0.15 -1.66 16 16 C -0.04 -0.42 5.39 -27.88 -0.15 -0.57 16 17 C 0.19 2.51 7.28 -154.99 -1.13 1.38 16 18 N -0.29 -4.87 12.21 32.80 0.40 -4.47 16 19 N -0.30 -4.56 12.21 29.69 0.36 -4.20 16 20 C 0.14 1.46 12.74 -89.94 -1.15 0.31 16 21 N -0.48 -4.78 3.15 -122.69 -0.39 -5.16 16 22 C 0.07 0.37 10.89 59.85 0.65 1.02 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.57 6.66 -51.93 -0.35 0.23 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.31 5.84 6.62 -39.29 -0.26 5.58 16 30 H 0.08 1.51 7.97 -51.92 -0.41 1.10 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.22 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.49 7.81 -51.93 -0.41 0.08 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -32.90 322.30 -8.42 -41.32 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.32 Total: 1.68 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.26 Total: -11.04 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.33 Total: -53.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.90 -8.42 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.775 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds