Wall clock time and date at job start Mon Mar 30 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 H 1.08995 * 109.47677 * 175.06707 * 3 2 1 5 5 C 1.50698 * 109.47000 * 55.06315 * 3 2 1 6 6 H 1.08006 * 119.99723 * 245.69793 * 5 3 2 7 7 C 1.37878 * 120.00237 * 65.70131 * 5 3 2 8 8 N 1.31517 * 119.99647 * 5.49741 * 7 5 3 9 9 Si 1.86796 * 120.00157 * 185.49308 * 7 5 3 10 10 H 1.48501 * 109.47167 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47467 * 300.00098 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00214 * 9 7 5 13 13 N 1.46906 * 109.46944 * 295.06684 * 3 2 1 14 14 C 1.46907 * 110.99731 * 279.82871 * 13 3 2 15 15 C 1.52994 * 109.47054 * 185.02072 * 14 13 3 16 16 C 1.52998 * 109.47093 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46927 * 179.97438 * 16 15 14 18 18 N 1.30521 * 126.34286 * 90.02716 * 17 16 15 19 19 N 1.28600 * 109.67304 * 179.97438 * 18 17 16 20 20 C 1.30519 * 109.67116 * 359.97438 * 19 18 17 21 21 N 1.35485 * 126.35069 * 269.71256 * 17 16 15 22 22 C 1.46502 * 126.97888 * 0.03700 * 21 17 16 23 23 H 1.09000 * 109.47244 * 65.00794 * 1 2 3 24 24 H 1.09005 * 109.47691 * 185.01007 * 1 2 3 25 25 H 1.09002 * 109.47613 * 305.01368 * 1 2 3 26 26 H 1.09001 * 109.47234 * 239.99551 * 2 1 3 27 27 H 1.09004 * 109.46921 * 119.99301 * 2 1 3 28 28 H 0.96999 * 120.00072 * 355.14398 * 8 7 5 29 29 H 1.00898 * 111.00153 * 43.77841 * 13 3 2 30 30 H 1.08998 * 109.47076 * 305.02076 * 14 13 3 31 31 H 1.09001 * 109.46697 * 65.01773 * 14 13 3 32 32 H 1.09006 * 109.46938 * 299.99771 * 15 14 13 33 33 H 1.08999 * 109.47412 * 59.99510 * 15 14 13 34 34 H 1.08993 * 109.47234 * 299.99597 * 16 15 14 35 35 H 1.09003 * 109.47153 * 60.00267 * 16 15 14 36 36 H 1.08001 * 126.34436 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47208 * 89.99949 * 22 21 17 38 38 H 1.09001 * 109.47190 * 210.00247 * 22 21 17 39 39 H 1.08999 * 109.46997 * 330.00001 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9887 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9033 2.6697 9 14 0.9063 2.6440 3.8983 10 1 1.4305 2.0824 5.1692 11 1 1.1618 4.1064 3.8613 12 1 -0.5551 2.3945 3.8118 13 7 1.6499 2.0998 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.1992 2.5274 -3.6025 16 6 3.1469 2.1429 -4.7404 17 6 2.7916 2.9277 -5.9769 18 7 3.2715 4.0926 -6.3181 19 7 2.7490 4.4666 -7.4321 20 6 1.9126 3.5570 -7.8524 21 7 1.9194 2.5524 -6.9433 22 6 1.1396 1.3131 -6.9936 23 1 -0.3634 0.4342 -0.9314 24 1 -0.3635 -1.0237 0.0897 25 1 -0.3634 0.5896 0.8417 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 3.0721 0.4282 1.9218 29 1 0.6931 1.8858 -1.4927 30 1 3.5860 1.9538 -2.0571 31 1 2.4645 0.6641 -2.5542 32 1 1.1726 2.3036 -3.8928 33 1 2.2941 3.5933 -3.3956 34 1 4.1732 2.3669 -4.4499 35 1 3.0523 1.0769 -4.9476 36 1 1.3267 3.5962 -8.7588 37 1 0.1823 1.4657 -6.4952 38 1 0.9677 1.0340 -8.0332 39 1 1.6887 0.5176 -6.4899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390191829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:38 Heat of formation + Delta-G solvation = 62.658055 kcal Electronic energy + Delta-G solvation = -18375.252919 eV Core-core repulsion = 15546.815328 eV Total energy + Delta-G solvation = -2828.437590 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.23419 -37.19949 -35.46494 -34.64809 -32.38286 -30.88356 -29.41529 -27.93308 -26.43007 -24.50668 -23.57322 -22.51352 -21.50747 -20.65065 -19.52361 -17.31283 -16.83213 -16.43139 -15.73993 -15.29195 -14.58065 -14.17954 -14.01501 -13.76058 -13.65058 -13.21727 -13.11386 -12.67567 -12.51312 -12.13173 -11.65110 -11.48135 -11.18891 -11.01292 -10.81257 -10.75445 -10.42899 -10.38674 -10.22827 -10.08564 -10.04370 -9.88688 -9.28885 -8.62991 -8.23399 -7.34365 -6.29199 -3.99024 1.65117 2.27902 2.78563 3.46410 3.48354 3.66717 4.12529 4.26565 4.37945 4.54656 4.64501 4.74641 4.93203 4.95972 5.27441 5.30425 5.40319 5.54833 5.58470 5.74319 5.82628 5.93980 6.01652 6.05846 6.10591 6.26583 6.37066 6.44129 6.62647 6.66123 6.96005 7.03606 7.20848 7.28151 7.90744 8.26623 8.44821 8.62905 8.64542 8.93758 9.69476 11.07052 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037385 B = 0.003827 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.789243 B = 7314.936062 C = 7603.726065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.060 3.940 15 C -0.107 4.107 16 C -0.034 4.034 17 C 0.188 3.812 18 N -0.294 5.294 19 N -0.298 5.298 20 C 0.140 3.860 21 N -0.478 5.478 22 C 0.072 3.928 23 H 0.031 0.969 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.269 0.731 29 H 0.327 0.673 30 H 0.067 0.933 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -3.336 -18.711 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.095 3.905 4 H 0.045 0.955 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.307 5.307 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.074 4.074 17 C -0.079 4.079 18 N -0.134 5.134 19 N -0.137 5.137 20 C -0.147 4.147 21 N -0.170 5.170 22 C -0.072 4.072 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.159 -1.395 -16.872 17.222 hybrid contribution -1.171 -2.335 -2.149 3.382 sum -4.330 -3.729 -19.021 19.861 Atomic orbital electron populations 1.21591 0.96824 0.99058 1.01368 1.22262 0.96119 1.01505 0.99365 1.19348 0.95680 0.88305 0.87169 0.95501 1.21818 1.30028 1.18050 0.91093 0.92715 1.25715 0.95788 0.97090 1.00028 1.70816 1.24569 1.24526 1.35557 0.83567 0.75478 0.75667 0.75743 1.20984 1.21478 1.21575 1.60712 1.04828 1.62470 1.02675 1.21883 0.98554 0.95419 0.91196 1.21526 0.97536 1.02495 0.93097 1.20116 1.02415 0.97152 0.87722 1.25032 0.93043 0.95469 0.94363 1.74304 1.22318 1.09154 1.07645 1.74243 1.09351 1.23825 1.06330 1.26393 1.03339 0.86650 0.98357 1.46219 1.33845 1.18182 1.18713 1.22126 0.96459 0.83855 1.04714 0.94990 0.95401 0.90822 0.96126 0.91508 0.91975 0.85552 0.91411 0.96494 0.92705 0.90243 0.88022 0.90237 0.76712 0.89734 0.89025 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 37.15 0.35 -2.28 16 2 C -0.15 -3.35 5.45 -26.73 -0.15 -3.50 16 3 C 0.20 4.89 1.95 -68.86 -0.13 4.76 16 4 H 0.03 0.72 7.32 -51.93 -0.38 0.34 16 5 C -0.57 -15.50 7.18 -34.44 -0.25 -15.74 16 6 H 0.05 1.52 7.82 -52.48 -0.41 1.11 16 7 C 0.02 0.48 5.29 -17.82 -0.09 0.38 16 8 N -0.92 -26.88 13.21 55.43 0.73 -26.15 16 9 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.85 6.19 -107.95 -0.67 -14.52 16 14 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 15 C -0.11 -1.45 5.50 -26.74 -0.15 -1.60 16 16 C -0.03 -0.38 5.57 -27.88 -0.16 -0.54 16 17 C 0.19 2.40 7.28 -154.99 -1.13 1.27 16 18 N -0.29 -4.73 12.21 32.79 0.40 -4.33 16 19 N -0.30 -4.44 12.21 29.69 0.36 -4.08 16 20 C 0.14 1.43 12.74 -89.95 -1.15 0.29 16 21 N -0.48 -4.62 3.15 -122.69 -0.39 -5.00 16 22 C 0.07 0.36 11.04 59.85 0.66 1.02 16 23 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.65 6.88 -51.93 -0.36 1.29 16 26 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 27 H 0.07 1.63 6.17 -51.93 -0.32 1.31 16 28 H 0.27 7.78 5.62 -40.82 -0.23 7.55 16 29 H 0.33 6.33 6.79 -39.29 -0.27 6.07 16 30 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 31 H 0.02 0.26 7.20 -51.93 -0.37 -0.11 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 0.70 7.21 -51.93 -0.37 0.32 16 36 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 0.39 7.19 -51.93 -0.37 0.02 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -33.56 315.93 -8.06 -41.63 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.97 Total: 2.79 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.21 Total: -14.99 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.44 Total: -54.07 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.56 -8.06 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.284 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds