Wall clock time and date at job start Mon Mar 30 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 H 1.08995 * 109.47677 * 175.06707 * 3 2 1 5 5 C 1.50698 * 109.47000 * 55.06315 * 3 2 1 6 6 H 1.08006 * 119.99723 * 245.69793 * 5 3 2 7 7 C 1.37878 * 120.00237 * 65.70131 * 5 3 2 8 8 N 1.31517 * 119.99647 * 5.49741 * 7 5 3 9 9 Si 1.86796 * 120.00157 * 185.49308 * 7 5 3 10 10 H 1.48501 * 109.47167 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47467 * 300.00098 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00214 * 9 7 5 13 13 N 1.46906 * 109.46944 * 295.06684 * 3 2 1 14 14 C 1.46907 * 110.99731 * 279.82871 * 13 3 2 15 15 C 1.52994 * 109.47054 * 185.02072 * 14 13 3 16 16 C 1.52998 * 109.47093 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46927 * 179.97438 * 16 15 14 18 18 N 1.30521 * 126.34286 * 90.02716 * 17 16 15 19 19 N 1.28600 * 109.67304 * 179.97438 * 18 17 16 20 20 C 1.30519 * 109.67116 * 359.97438 * 19 18 17 21 21 N 1.35485 * 126.35069 * 269.71256 * 17 16 15 22 22 C 1.46502 * 126.97888 * 0.03700 * 21 17 16 23 23 H 1.09000 * 109.47244 * 65.00794 * 1 2 3 24 24 H 1.09005 * 109.47691 * 185.01007 * 1 2 3 25 25 H 1.09002 * 109.47613 * 305.01368 * 1 2 3 26 26 H 1.09001 * 109.47234 * 239.99551 * 2 1 3 27 27 H 1.09004 * 109.46921 * 119.99301 * 2 1 3 28 28 H 0.96999 * 120.00072 * 355.14398 * 8 7 5 29 29 H 1.00898 * 111.00153 * 43.77841 * 13 3 2 30 30 H 1.08998 * 109.47076 * 305.02076 * 14 13 3 31 31 H 1.09001 * 109.46697 * 65.01773 * 14 13 3 32 32 H 1.09006 * 109.46938 * 299.99771 * 15 14 13 33 33 H 1.08999 * 109.47412 * 59.99510 * 15 14 13 34 34 H 1.08993 * 109.47234 * 299.99597 * 16 15 14 35 35 H 1.09003 * 109.47153 * 60.00267 * 16 15 14 36 36 H 1.08001 * 126.34436 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47208 * 89.99949 * 22 21 17 38 38 H 1.09001 * 109.47190 * 210.00247 * 22 21 17 39 39 H 1.08999 * 109.46997 * 330.00001 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9887 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9033 2.6697 9 14 0.9063 2.6440 3.8983 10 1 1.4305 2.0824 5.1692 11 1 1.1618 4.1064 3.8613 12 1 -0.5551 2.3945 3.8118 13 7 1.6499 2.0998 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.1992 2.5274 -3.6025 16 6 3.1469 2.1429 -4.7404 17 6 2.7916 2.9277 -5.9769 18 7 3.2715 4.0926 -6.3181 19 7 2.7490 4.4666 -7.4321 20 6 1.9126 3.5570 -7.8524 21 7 1.9194 2.5524 -6.9433 22 6 1.1396 1.3131 -6.9936 23 1 -0.3634 0.4342 -0.9314 24 1 -0.3635 -1.0237 0.0897 25 1 -0.3634 0.5896 0.8417 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 3.0721 0.4282 1.9218 29 1 0.6931 1.8858 -1.4927 30 1 3.5860 1.9538 -2.0571 31 1 2.4645 0.6641 -2.5542 32 1 1.1726 2.3036 -3.8928 33 1 2.2941 3.5933 -3.3956 34 1 4.1732 2.3669 -4.4499 35 1 3.0523 1.0769 -4.9476 36 1 1.3267 3.5962 -8.7588 37 1 0.1823 1.4657 -6.4952 38 1 0.9677 1.0340 -8.0332 39 1 1.6887 0.5176 -6.4899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390191829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:38 Heat of formation + Delta-G solvation = 41.327358 kcal Electronic energy + Delta-G solvation = -18376.177887 eV Core-core repulsion = 15546.815328 eV Total energy + Delta-G solvation = -2829.362559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.09031 -38.85373 -36.49783 -35.72541 -34.05728 -32.43940 -30.64657 -28.52389 -27.98909 -26.10570 -25.33228 -23.32658 -22.76458 -21.58473 -21.31600 -18.79116 -18.01988 -17.26698 -16.94931 -16.41836 -15.86740 -15.59440 -15.48593 -15.22084 -14.82071 -14.34565 -14.25432 -14.08869 -13.50272 -13.39341 -13.11366 -12.82851 -12.62842 -12.58515 -12.35890 -12.10995 -11.99197 -11.87888 -11.71296 -11.59119 -11.31470 -11.09602 -10.64014 -10.34807 -10.22431 -8.99477 -8.48574 -6.18963 0.84925 1.56387 1.62735 1.63030 1.82069 1.86007 2.61457 3.21517 3.27803 3.59336 3.74507 3.89213 3.91489 4.17576 4.27916 4.30901 4.37549 4.39667 4.41773 4.55108 4.61047 4.65984 4.70909 4.79376 4.91203 4.96123 5.13366 5.14659 5.21333 5.24512 5.28960 5.44471 5.59005 5.97275 6.00680 6.24844 6.57297 6.81963 6.83653 7.56969 7.73516 8.88251 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037385 B = 0.003827 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.789243 B = 7314.936062 C = 7603.726065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C 0.206 3.794 4 H -0.008 1.008 5 C -0.577 4.577 6 H 0.043 0.957 7 C -0.029 4.029 8 N -0.943 5.943 9 Si 1.107 2.893 10 H -0.288 1.288 11 H -0.279 1.279 12 H -0.270 1.270 13 N -0.688 5.688 14 C 0.063 3.937 15 C -0.090 4.090 16 C -0.025 4.025 17 C 0.180 3.820 18 N -0.348 5.348 19 N -0.354 5.354 20 C 0.159 3.841 21 N -0.473 5.473 22 C 0.061 3.939 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -4.618 -20.562 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C 0.097 3.903 4 H 0.010 0.990 5 C -0.616 4.616 6 H 0.061 0.939 7 C -0.227 4.227 8 N -0.582 5.582 9 Si 0.931 3.069 10 H -0.214 1.214 11 H -0.205 1.205 12 H -0.195 1.195 13 N -0.319 5.319 14 C -0.067 4.067 15 C -0.129 4.129 16 C -0.065 4.065 17 C -0.089 4.089 18 N -0.188 5.188 19 N -0.193 5.193 20 C -0.129 4.129 21 N -0.163 5.163 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.278 0.722 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.134 -2.688 -18.756 19.631 hybrid contribution -0.586 -1.956 -1.690 2.650 sum -5.720 -4.643 -20.446 21.733 Atomic orbital electron populations 1.21499 0.95002 1.00218 1.01419 1.22095 0.97625 0.99600 0.99033 1.19118 0.93333 0.89703 0.88146 0.99028 1.22103 1.29348 1.17669 0.92435 0.93854 1.26937 0.95776 0.97116 1.02879 1.70914 1.26105 1.25911 1.35261 0.83036 0.75672 0.75250 0.72949 1.21353 1.20530 1.19478 1.60549 1.05983 1.62703 1.02695 1.21890 0.96818 0.97016 0.90934 1.21295 0.99027 1.00084 0.92541 1.20036 1.01191 0.98858 0.86408 1.25088 0.93674 0.94931 0.95209 1.74179 1.24435 1.11234 1.08956 1.74123 1.11848 1.26334 1.06951 1.27246 1.01462 0.85329 0.98870 1.46467 1.33132 1.19269 1.17411 1.22546 0.96202 0.81976 1.07222 0.92525 0.93131 0.93662 0.93641 0.94549 0.92967 0.84611 0.93088 0.94441 0.91130 0.93182 0.88858 0.86879 0.72164 0.88825 0.85916 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 9.38 71.98 0.68 -4.04 16 2 C -0.14 -6.20 5.45 30.59 0.17 -6.03 16 3 C 0.21 10.00 1.95 44.17 0.09 10.08 16 4 H -0.01 -0.45 7.32 -2.39 -0.02 -0.47 16 5 C -0.58 -31.66 7.18 25.60 0.18 -31.48 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 7 C -0.03 -1.64 5.29 84.65 0.45 -1.19 16 8 N -0.94 -56.46 13.21 21.45 0.28 -56.17 16 9 Si 1.11 50.41 29.91 68.60 2.05 52.46 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.69 -27.70 6.19 -495.44 -3.07 -30.77 16 14 C 0.06 1.99 5.48 86.30 0.47 2.47 16 15 C -0.09 -2.32 5.50 30.59 0.17 -2.15 16 16 C -0.02 -0.52 5.57 29.85 0.17 -0.35 16 17 C 0.18 4.35 7.28 137.98 1.01 5.36 16 18 N -0.35 -11.29 12.21 -50.16 -0.61 -11.90 16 19 N -0.35 -10.41 12.21 -59.99 -0.73 -11.15 16 20 C 0.16 2.87 12.74 180.11 2.30 5.17 16 21 N -0.47 -7.76 3.15 -542.07 -1.71 -9.46 16 22 C 0.06 0.34 11.04 127.77 1.41 1.75 16 23 H 0.06 1.85 6.68 -2.39 -0.02 1.83 16 24 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.04 1.97 6.88 -2.39 -0.02 1.95 16 26 H 0.04 1.71 7.13 -2.39 -0.02 1.69 16 27 H 0.04 1.78 6.17 -2.38 -0.01 1.77 16 28 H 0.26 15.54 5.62 -92.71 -0.52 15.02 16 29 H 0.34 12.37 6.79 -89.70 -0.61 11.76 16 30 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 31 H 0.04 1.05 7.20 -2.39 -0.02 1.04 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 1.57 7.21 -2.39 -0.02 1.56 16 36 H 0.26 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.10 0.40 7.19 -2.39 -0.02 0.38 16 Total: -1.00 -76.41 315.93 3.97 -72.44 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.68 Total: 14.98 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 7.08 Total: -20.42 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -5.84 Total: -119.46 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -76.41 3.97 -72.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390191829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.763 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds