Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46897 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47515 * 180.02562 * 8 7 6 10 10 H 1.08011 * 119.99895 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00400 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99947 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00192 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47284 * 89.99746 * 13 11 9 15 15 H 1.48501 * 109.47269 * 209.99925 * 13 11 9 16 16 H 1.48499 * 109.47360 * 329.99709 * 13 11 9 17 17 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 18 18 N 1.33243 * 125.52772 * 285.02538 * 17 2 1 19 19 C 1.30826 * 109.83370 * 180.02562 * 18 17 2 20 20 N 1.34432 * 108.07463 * 0.02562 * 19 18 17 21 21 C 1.46504 * 126.82341 * 180.02562 * 20 19 18 22 22 N 1.30710 * 125.52888 * 104.72381 * 17 2 1 23 23 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 25 25 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 26 26 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 30 30 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 31 31 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 32 32 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 33 33 H 1.08997 * 109.47664 * 300.00230 * 8 7 6 34 34 H 1.09005 * 109.47058 * 60.00267 * 8 7 6 35 35 H 0.96997 * 119.99623 * 180.02562 * 12 11 9 36 36 H 1.08006 * 125.96575 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47891 * 89.96604 * 21 20 19 38 38 H 1.09000 * 109.46508 * 209.97484 * 21 20 19 39 39 H 1.09005 * 109.46780 * 329.96367 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1754 -0.3350 5.9965 9 6 3.2398 0.6037 7.1737 10 1 2.9439 1.6360 7.0580 11 6 3.6765 0.1449 8.3983 12 7 4.0373 -1.1120 8.5391 13 14 3.7556 1.3084 9.8575 14 1 2.4619 1.2776 10.5860 15 1 4.8477 0.8843 10.7701 16 1 4.0203 2.6882 9.3767 17 6 2.0323 -0.7104 -1.2304 18 7 2.0253 -2.0293 -1.4201 19 6 2.5321 -2.3118 -2.5926 20 7 2.8799 -1.1567 -3.1860 21 6 3.4854 -0.9975 -4.5105 22 7 2.5404 -0.1325 -2.2870 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.9173 -1.1205 1.0288 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6164 2.5525 29 1 1.9201 -1.3565 3.8030 30 1 3.5917 -0.9261 3.3683 31 1 3.3384 1.2440 4.5400 32 1 1.6669 0.8143 4.9752 33 1 2.4988 -1.1584 6.2256 34 1 4.1706 -0.7291 5.7908 35 1 4.3442 -1.4348 9.4007 36 1 2.6512 -3.3005 -3.0106 37 1 2.7001 -0.8926 -5.2589 38 1 4.1153 -0.1079 -4.5173 39 1 4.0918 -1.8737 -4.7404 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391973896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = 70.853172 kcal Electronic energy + Delta-G solvation = -17611.332313 eV Core-core repulsion = 14783.250089 eV Total energy + Delta-G solvation = -2828.082223 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.32520 -37.32719 -34.86645 -33.83203 -32.43663 -31.44890 -30.14143 -27.61316 -27.40575 -24.60770 -23.12637 -22.33045 -21.14778 -20.32302 -19.71118 -17.30593 -16.26615 -16.18759 -15.83656 -15.65604 -14.65008 -14.49210 -14.24609 -14.00894 -13.66756 -13.30311 -12.77650 -12.43389 -12.30177 -12.09882 -12.01178 -11.55207 -11.37252 -11.26034 -10.91781 -10.48089 -10.43885 -10.34793 -10.16222 -10.03498 -9.76672 -9.54870 -9.18715 -8.93858 -8.32416 -8.26756 -5.92324 -3.94296 1.33918 2.00882 2.69790 3.36684 3.42448 3.46088 3.83218 4.01017 4.32127 4.47100 4.52561 4.65409 4.90920 4.94347 5.21525 5.28906 5.42992 5.49990 5.64660 5.66546 5.80080 5.98569 6.01166 6.12983 6.22469 6.27888 6.35155 6.52008 6.60605 6.91586 7.04356 7.11196 7.30181 7.47229 7.77729 7.90990 7.94443 8.09574 8.52232 9.13411 9.69227 11.19094 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.049489 B = 0.002827 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.648514 B = 9902.828488 C =10068.662266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.180 3.820 3 H 0.064 0.936 4 N -0.672 5.672 5 C 0.058 3.942 6 C -0.114 4.114 7 C -0.108 4.108 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.226 3.774 18 N -0.518 5.518 19 C 0.249 3.751 20 N -0.389 5.389 21 C 0.098 3.902 22 N -0.318 5.318 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.344 0.656 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.219 0.781 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -0.975 -27.368 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.068 3.932 3 H 0.081 0.919 4 N -0.304 5.304 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.057 4.057 18 N -0.245 5.245 19 C -0.048 4.048 20 N -0.180 5.180 21 C -0.045 4.045 22 N -0.147 5.147 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.163 0.837 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.236 0.764 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.430 -0.801 -27.024 27.253 hybrid contribution 1.068 0.821 0.211 1.363 sum -2.363 0.020 -26.813 26.917 Atomic orbital electron populations 1.21749 0.92635 1.03287 1.01531 1.19749 0.96369 0.94080 0.83037 0.91857 1.60559 1.34016 1.32906 1.02934 1.22188 1.00788 0.93628 0.90427 1.21621 1.00626 0.99311 0.93674 1.21586 1.00224 0.97698 0.95156 1.19095 0.96212 0.95441 0.90903 1.21301 1.43268 0.96461 0.94681 0.92782 1.25037 0.95579 0.95092 0.98890 1.69975 1.44872 1.14423 1.24334 0.86613 0.77629 0.81214 0.82644 1.20684 1.21286 1.19946 1.24324 0.96948 0.88908 0.95544 1.70470 1.22930 1.14967 1.16106 1.26179 0.95148 0.93492 0.89999 1.50430 1.46908 1.04893 1.15749 1.21936 0.98740 1.04824 0.78983 1.78037 1.22681 1.11911 1.02033 0.91091 0.91330 0.92881 0.83744 0.95503 0.90895 0.91436 0.92809 0.93720 0.93387 0.96553 0.96750 0.93088 0.76446 0.90294 0.89078 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.40 37.16 0.35 -1.22 16 2 C 0.18 2.33 3.16 -68.86 -0.22 2.12 16 3 H 0.06 0.81 7.80 -51.93 -0.40 0.40 16 4 N -0.67 -9.60 6.30 -107.95 -0.68 -10.28 16 5 C 0.06 0.87 5.48 -3.82 -0.02 0.85 16 6 C -0.11 -2.05 5.47 -26.73 -0.15 -2.20 16 7 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 10 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 13 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.23 3.00 6.63 -156.86 -1.04 1.96 16 18 N -0.52 -6.64 11.18 -11.98 -0.13 -6.77 16 19 C 0.25 2.20 12.66 -90.66 -1.15 1.05 16 20 N -0.39 -3.51 4.04 -69.44 -0.28 -3.79 16 21 C 0.10 0.38 11.53 59.85 0.69 1.07 16 22 N -0.32 -4.06 12.70 32.42 0.41 -3.65 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.34 5.03 8.35 -39.29 -0.33 4.70 16 27 H 0.03 0.39 8.06 -51.93 -0.42 -0.02 16 28 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.22 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -35.05 330.15 -8.75 -43.80 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.54 Total: -2.04 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.22 Total: -12.40 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.05 Total: -51.52 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.05 -8.75 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391973896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.651 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds