Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30526 * 126.34228 * 2 1 4 4 N 1.28595 * 109.67012 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.67331 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.34439 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47194 * 90.02741 * 6 5 4 8 8 C 1.46902 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46997 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46997 * 120.00167 * 16 14 12 19 19 H 1.48500 * 109.47074 * 240.00161 * 16 14 12 20 20 N 1.35488 * 107.30911 * 0.23026 * 5 4 3 21 21 C 1.46497 * 126.98131 * 179.77275 * 20 5 4 22 22 H 1.09004 * 109.47017 * 89.98042 * 1 2 3 23 23 H 1.09002 * 109.47179 * 209.97410 * 1 2 3 24 24 H 1.08997 * 109.47596 * 329.97934 * 1 2 3 25 25 H 1.09002 * 109.47213 * 330.02680 * 6 5 4 26 26 H 1.09001 * 109.47086 * 210.02435 * 6 5 4 27 27 H 1.00904 * 110.99696 * 56.04431 * 7 6 5 28 28 H 1.08993 * 109.47737 * 60.00169 * 8 7 6 29 29 H 1.09000 * 109.47263 * 299.99731 * 8 7 6 30 30 H 1.09000 * 109.47050 * 299.99824 * 9 8 7 31 31 H 1.09001 * 109.46801 * 59.99937 * 9 8 7 32 32 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 33 33 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47005 * 90.00046 * 21 20 5 38 38 H 1.09004 * 109.47392 * 209.99463 * 21 20 5 39 39 H 1.08997 * 109.47166 * 330.00190 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0514 0.0000 4 7 3.5124 0.6824 0.0005 5 6 3.5807 -0.6210 0.0015 6 6 4.8397 -1.4493 0.0018 7 7 5.2487 -1.7180 1.3869 8 6 6.4758 -2.5247 1.4264 9 6 6.8691 -2.7838 2.8821 10 6 8.1468 -3.6245 2.9232 11 6 8.5405 -3.8831 4.3789 12 6 9.7993 -4.7106 4.4195 13 1 10.2716 -5.0207 3.4990 14 6 10.3486 -5.0710 5.6316 15 7 9.7738 -4.6930 6.7525 16 14 11.9087 -6.0973 5.6819 17 1 12.3533 -6.3903 4.2957 18 1 12.9730 -5.3455 6.3941 19 1 11.6401 -7.3714 6.3958 20 7 2.3101 -1.0913 -0.0037 21 6 1.8899 -2.4947 -0.0095 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5141 25 1 5.6324 -0.9057 -0.5122 26 1 4.6540 -2.3927 -0.5117 27 1 4.5054 -2.1642 1.9033 28 1 7.2797 -1.9882 0.9225 29 1 6.3019 -3.4755 0.9226 30 1 7.0428 -1.8332 3.3863 31 1 6.0650 -3.3206 3.3856 32 1 7.9726 -4.5751 2.4191 33 1 8.9510 -3.0881 2.4196 34 1 8.7147 -2.9323 4.8826 35 1 7.7364 -4.4192 4.8830 36 1 10.1601 -4.9468 7.6052 37 1 1.7827 -2.8460 1.0168 38 1 0.9345 -2.5858 -0.5263 39 1 2.6397 -3.0964 -0.5230 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393139594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 56.173797 kcal Electronic energy + Delta-G solvation = -17611.999080 eV Core-core repulsion = 14783.280311 eV Total energy + Delta-G solvation = -2828.718769 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.33933 -37.05589 -35.40212 -34.40387 -32.86303 -31.89266 -29.43479 -27.99684 -27.56824 -25.68108 -23.82375 -21.63820 -21.37249 -21.00372 -19.99872 -17.15799 -16.84780 -16.34804 -16.05930 -15.12488 -14.72676 -14.65703 -14.41667 -14.03880 -13.99806 -13.34689 -13.22229 -13.00905 -12.59379 -12.45719 -12.38050 -11.69507 -11.65424 -11.44881 -11.03257 -10.62676 -10.51228 -10.47969 -10.44807 -10.43723 -9.65123 -9.34721 -9.21731 -8.99551 -8.57798 -8.33330 -5.98218 -4.00541 1.49864 2.13825 2.67317 3.31477 3.38874 3.42919 3.90319 4.04559 4.14294 4.27756 4.47293 4.51166 4.55762 4.76999 4.84294 5.01159 5.19740 5.30000 5.34896 5.37479 5.39895 5.59033 5.65817 5.81969 5.94047 6.09137 6.16218 6.45817 6.55766 6.77945 6.84018 6.95846 7.16170 7.20071 7.70722 7.85994 8.02820 8.45310 8.58546 9.07297 9.63478 11.13192 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054303 B = 0.002736 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.504072 B =10231.665589 C =10278.481313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.168 3.832 3 N -0.295 5.295 4 N -0.274 5.274 5 C 0.180 3.820 6 C 0.147 3.853 7 N -0.681 5.681 8 C 0.061 3.939 9 C -0.116 4.116 10 C -0.108 4.108 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.475 5.475 21 C 0.069 3.931 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.338 0.662 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 3.126 -15.751 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 N -0.136 5.136 4 N -0.114 5.114 5 C -0.087 4.087 6 C 0.016 3.984 7 N -0.313 5.313 8 C -0.067 4.067 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 N -0.167 5.167 21 C -0.075 4.075 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.919 5.142 -15.512 25.000 hybrid contribution 0.078 -2.885 -0.047 2.886 sum -18.841 2.257 -15.560 24.539 Atomic orbital electron populations 1.20199 0.83809 1.04574 1.03843 1.24844 0.97036 0.82963 1.05047 1.74294 0.96564 1.23918 1.18833 1.74279 1.11759 1.08046 1.17334 1.24693 0.86344 0.92756 1.04932 1.20226 0.90341 0.95810 0.92023 1.60445 1.07577 1.52379 1.10929 1.22134 0.91021 0.94302 0.99252 1.21649 0.98986 1.01095 0.93659 1.21588 0.94437 0.97450 1.01165 1.19100 0.96064 0.96785 0.89736 1.21320 1.09612 1.32679 0.92167 0.92703 1.25043 0.97426 0.96310 0.95815 1.69980 1.39998 1.46286 0.97293 0.86554 0.83454 0.80066 0.78031 1.19769 1.20996 1.21060 1.46038 1.06829 1.08735 1.55109 1.22141 1.02776 0.78051 1.04485 0.89753 0.90503 0.88601 0.87348 0.93524 0.84429 0.90569 0.95245 0.91385 0.92795 0.93662 0.93276 0.96537 0.96775 0.93087 0.89646 0.88888 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.06 36.01 0.36 0.01 16 2 C 0.17 1.76 8.03 -154.98 -1.24 0.52 16 3 N -0.30 -4.34 12.21 32.80 0.40 -3.94 16 4 N -0.27 -4.29 12.21 32.79 0.40 -3.89 16 5 C 0.18 2.19 7.54 -154.99 -1.17 1.02 16 6 C 0.15 1.53 6.04 -4.97 -0.03 1.50 16 7 N -0.68 -8.33 6.49 -115.05 -0.75 -9.08 16 8 C 0.06 0.80 5.69 -3.82 -0.02 0.78 16 9 C -0.12 -1.92 5.47 -26.73 -0.15 -2.07 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 N -0.47 -4.43 3.15 -118.00 -0.37 -4.81 16 21 C 0.07 0.31 10.71 59.85 0.64 0.95 16 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.08 0.25 7.87 -51.93 -0.41 -0.16 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.37 7.21 -51.93 -0.37 -0.01 16 27 H 0.34 3.82 8.72 -39.29 -0.34 3.48 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.20 7.82 -51.93 -0.41 -0.20 16 39 H 0.09 0.32 7.19 -51.93 -0.37 -0.05 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -35.39 329.01 -8.46 -43.85 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -6.52 Total: -4.40 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.30 Total: -12.92 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.42 Total: -48.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.39 -8.46 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393139594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.027 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds