Wall clock time and date at job start Mon Mar 30 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30526 * 126.34228 * 2 1 4 4 N 1.28595 * 109.67012 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.67331 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.34439 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47194 * 90.02741 * 6 5 4 8 8 C 1.46902 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46997 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46997 * 120.00167 * 16 14 12 19 19 H 1.48500 * 109.47074 * 240.00161 * 16 14 12 20 20 N 1.35488 * 107.30911 * 0.23026 * 5 4 3 21 21 C 1.46497 * 126.98131 * 179.77275 * 20 5 4 22 22 H 1.09004 * 109.47017 * 89.98042 * 1 2 3 23 23 H 1.09002 * 109.47179 * 209.97410 * 1 2 3 24 24 H 1.08997 * 109.47596 * 329.97934 * 1 2 3 25 25 H 1.09002 * 109.47213 * 330.02680 * 6 5 4 26 26 H 1.09001 * 109.47086 * 210.02435 * 6 5 4 27 27 H 1.00904 * 110.99696 * 56.04431 * 7 6 5 28 28 H 1.08993 * 109.47737 * 60.00169 * 8 7 6 29 29 H 1.09000 * 109.47263 * 299.99731 * 8 7 6 30 30 H 1.09000 * 109.47050 * 299.99824 * 9 8 7 31 31 H 1.09001 * 109.46801 * 59.99937 * 9 8 7 32 32 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 33 33 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47005 * 90.00046 * 21 20 5 38 38 H 1.09004 * 109.47392 * 209.99463 * 21 20 5 39 39 H 1.08997 * 109.47166 * 330.00190 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0514 0.0000 4 7 3.5124 0.6824 0.0005 5 6 3.5807 -0.6210 0.0015 6 6 4.8397 -1.4493 0.0018 7 7 5.2487 -1.7180 1.3869 8 6 6.4758 -2.5247 1.4264 9 6 6.8691 -2.7838 2.8821 10 6 8.1468 -3.6245 2.9232 11 6 8.5405 -3.8831 4.3789 12 6 9.7993 -4.7106 4.4195 13 1 10.2716 -5.0207 3.4990 14 6 10.3486 -5.0710 5.6316 15 7 9.7738 -4.6930 6.7525 16 14 11.9087 -6.0973 5.6819 17 1 12.3533 -6.3903 4.2957 18 1 12.9730 -5.3455 6.3941 19 1 11.6401 -7.3714 6.3958 20 7 2.3101 -1.0913 -0.0037 21 6 1.8899 -2.4947 -0.0095 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5141 25 1 5.6324 -0.9057 -0.5122 26 1 4.6540 -2.3927 -0.5117 27 1 4.5054 -2.1642 1.9033 28 1 7.2797 -1.9882 0.9225 29 1 6.3019 -3.4755 0.9226 30 1 7.0428 -1.8332 3.3863 31 1 6.0650 -3.3206 3.3856 32 1 7.9726 -4.5751 2.4191 33 1 8.9510 -3.0881 2.4196 34 1 8.7147 -2.9323 4.8826 35 1 7.7364 -4.4192 4.8830 36 1 10.1601 -4.9468 7.6052 37 1 1.7827 -2.8460 1.0168 38 1 0.9345 -2.5858 -0.5263 39 1 2.6397 -3.0964 -0.5230 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393139594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:40 Heat of formation + Delta-G solvation = 32.298600 kcal Electronic energy + Delta-G solvation = -17613.034386 eV Core-core repulsion = 14783.280311 eV Total energy + Delta-G solvation = -2829.754075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.15098 -38.13266 -36.27422 -35.89347 -34.35843 -33.12904 -30.67121 -29.00009 -28.21702 -26.99295 -25.33717 -22.92625 -22.31211 -21.89694 -21.51701 -18.45110 -17.80903 -17.59072 -17.18050 -16.52779 -16.14291 -15.62877 -15.45430 -15.08679 -14.50916 -14.41436 -14.11021 -13.78532 -13.66929 -13.56573 -13.32358 -13.19506 -13.00630 -12.86185 -12.55572 -12.28190 -12.21444 -12.10754 -11.38278 -11.32308 -11.29003 -11.13120 -11.01265 -10.55672 -10.13222 -9.47281 -8.19705 -6.31090 0.73691 1.39870 1.40697 1.51636 1.53961 1.77986 2.41201 3.06431 3.13295 3.35119 3.55168 3.76604 3.84954 4.11308 4.18184 4.23553 4.32769 4.48889 4.56054 4.61719 4.67290 4.68461 4.79870 4.85200 4.91929 4.96006 4.99084 5.20757 5.24564 5.28270 5.36999 5.56411 5.79247 5.84890 5.89010 5.97771 6.25660 6.28945 6.87405 7.38507 7.72294 8.92488 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054303 B = 0.002736 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.504072 B =10231.665589 C =10278.481313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.175 3.825 3 N -0.351 5.351 4 N -0.329 5.329 5 C 0.175 3.825 6 C 0.153 3.847 7 N -0.696 5.696 8 C 0.075 3.925 9 C -0.107 4.107 10 C -0.096 4.096 11 C 0.021 3.979 12 C -0.542 4.542 13 H 0.062 0.938 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.280 1.280 19 H -0.277 1.277 20 N -0.470 5.470 21 C 0.058 3.942 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.344 0.656 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.051 0.949 34 H -0.015 1.015 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 1.138 -17.306 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 N -0.191 5.191 4 N -0.169 5.169 5 C -0.094 4.094 6 C 0.022 3.978 7 N -0.329 5.329 8 C -0.053 4.053 9 C -0.145 4.145 10 C -0.134 4.134 11 C -0.016 4.016 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.202 4.202 15 N -0.577 5.577 16 Si 0.791 3.209 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.203 1.203 20 N -0.161 5.161 21 C -0.083 4.083 22 H 0.122 0.878 23 H 0.124 0.876 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.004 0.996 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.700 3.141 -17.087 26.266 hybrid contribution 0.227 -2.278 0.463 2.336 sum -19.473 0.863 -16.624 25.618 Atomic orbital electron populations 1.20444 0.80374 1.05923 1.05496 1.25689 0.98752 0.82467 1.02390 1.74167 0.96922 1.26373 1.21653 1.74140 1.12898 1.10342 1.19540 1.24885 0.87907 0.92178 1.04465 1.20234 0.89558 0.96917 0.91054 1.60299 1.07578 1.52560 1.12468 1.21878 0.91525 0.95550 0.96364 1.21469 0.97293 0.99338 0.96410 1.21384 0.96233 0.98781 0.96967 1.19044 0.94856 0.94540 0.93199 1.21786 1.10561 1.32987 0.92640 0.91996 1.26041 1.01197 0.97607 0.95376 1.70117 1.41911 1.47612 0.98041 0.85378 0.78701 0.78185 0.78655 1.18374 1.20543 1.20273 1.46274 1.05637 1.10330 1.53862 1.22570 1.04590 0.75330 1.05840 0.87780 0.87621 0.88753 0.88004 0.90080 0.83808 0.90589 0.93015 0.93333 0.92612 0.92442 0.93066 0.99635 0.99119 0.92822 0.88618 0.86076 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.06 71.24 0.72 0.18 16 2 C 0.18 3.48 8.03 137.98 1.11 4.58 16 3 N -0.35 -10.54 12.21 -50.15 -0.61 -11.15 16 4 N -0.33 -10.59 12.21 -50.16 -0.61 -11.20 16 5 C 0.17 4.12 7.54 137.98 1.04 5.16 16 6 C 0.15 2.92 6.04 85.56 0.52 3.44 16 7 N -0.70 -15.98 6.49 -517.91 -3.36 -19.34 16 8 C 0.08 1.82 5.69 86.31 0.49 2.31 16 9 C -0.11 -3.49 5.47 30.60 0.17 -3.33 16 10 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 11 C 0.02 1.11 4.97 29.85 0.15 1.26 16 12 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 15 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 N -0.47 -7.87 3.15 -527.24 -1.66 -9.53 16 21 C 0.06 0.31 10.71 127.77 1.37 1.68 16 22 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 23 H 0.11 0.29 7.87 -2.39 -0.02 0.27 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 0.99 7.21 -2.39 -0.02 0.98 16 27 H 0.34 7.17 8.72 -89.69 -0.78 6.38 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.12 -0.01 7.82 -2.38 -0.02 -0.03 16 39 H 0.10 0.32 7.19 -2.39 -0.02 0.31 16 Total: -1.00 -79.92 329.01 2.72 -77.20 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.24 Total: 4.31 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 6.41 Total: -19.14 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -5.96 Total: -108.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.92 2.72 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393139594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.502 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds