Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47301 * 110.99826 * 180.02562 * 12 11 10 14 14 H 1.10030 * 107.74734 * 324.99250 * 13 12 11 15 15 C 1.52232 * 109.53242 * 83.10938 * 13 12 11 16 16 C 1.52238 * 112.71225 * 77.31934 * 15 13 12 17 17 N 1.45860 * 112.35963 * 46.94420 * 16 15 13 18 18 C 1.45831 * 113.95606 * 70.28095 * 17 16 15 19 19 C 1.52225 * 112.58844 * 288.86233 * 18 17 16 20 20 C 1.52180 * 112.77855 * 313.82035 * 19 18 17 21 21 C 1.52363 * 109.58077 * 206.92767 * 13 12 11 22 22 H 1.10013 * 108.73486 * 48.65531 * 21 13 12 23 23 C 1.46526 * 111.96697 * 301.85462 * 17 16 15 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 30 30 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 31 31 H 1.00894 * 110.99644 * 303.95540 * 12 11 10 32 32 H 1.08758 * 110.70205 * 201.88270 * 15 13 12 33 33 H 1.10507 * 108.08955 * 317.98777 * 15 13 12 34 34 H 1.09664 * 109.11335 * 168.25080 * 16 15 13 35 35 H 1.09615 * 109.18319 * 285.56634 * 16 15 13 36 36 H 1.09673 * 109.18633 * 50.17044 * 18 17 16 37 37 H 1.09678 * 109.20979 * 167.45134 * 18 17 16 38 38 H 1.08762 * 110.78357 * 78.70457 * 19 18 17 39 39 H 1.10556 * 107.89113 * 194.66969 * 19 18 17 40 40 H 1.09677 * 109.20942 * 166.14064 * 20 19 18 41 41 H 1.09658 * 109.33025 * 283.63305 * 20 19 18 42 42 H 1.09013 * 109.70154 * 183.83955 * 23 17 16 43 43 H 1.08750 * 110.07106 * 304.59230 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 7 6.0415 -4.0213 0.0150 13 6 7.5139 -4.0604 0.0158 14 1 7.8723 -3.2141 -0.5891 15 6 8.0268 -3.8954 1.4396 16 6 7.8984 -5.1700 2.2620 17 7 8.3821 -6.3443 1.5447 18 6 9.8294 -6.3760 1.3686 19 6 10.3193 -5.3408 0.3658 20 6 9.4889 -5.3166 -0.9092 21 6 7.9906 -5.3564 -0.6282 22 1 7.4572 -5.4948 -1.5804 23 6 7.6704 -6.5457 0.2799 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.6580 -3.1457 0.9010 28 1 3.6588 -3.1546 -0.8790 29 1 5.9150 -2.1270 -0.8841 30 1 5.9150 -2.1179 0.8958 31 1 5.6660 -4.5338 0.7988 32 1 9.0548 -3.5405 1.4392 33 1 7.4264 -3.1088 1.9315 34 1 8.4669 -5.0556 3.1928 35 1 6.8468 -5.3196 2.5328 36 1 10.3142 -6.1958 2.3357 37 1 10.1300 -7.3751 1.0302 38 1 10.3602 -4.3532 0.8196 39 1 11.3585 -5.5992 0.0911 40 1 9.7229 -4.4066 -1.4750 41 1 9.7599 -6.1752 -1.5352 42 1 8.0122 -7.4673 -0.1915 43 1 6.5993 -6.6018 0.4592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394948736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -18.437399 kcal Electronic energy + Delta-G solvation = -19281.265664 eV Core-core repulsion = 16552.851854 eV Total energy + Delta-G solvation = -2728.413810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73620 -36.42926 -33.84033 -33.37864 -32.10413 -30.90139 -30.12010 -26.84099 -25.13744 -24.02082 -22.51867 -22.16020 -21.08619 -20.12405 -18.28691 -16.77258 -16.31641 -15.65097 -15.12960 -14.90859 -14.82228 -14.55231 -14.08081 -13.68534 -13.54521 -13.03314 -12.84786 -12.67318 -12.41819 -12.08619 -12.07208 -11.64101 -11.57061 -11.36123 -11.15803 -10.95327 -10.80437 -10.73385 -10.40319 -10.18967 -9.93486 -9.70488 -9.51225 -9.15172 -8.51924 -8.21958 -8.16730 -6.02162 -3.99806 3.31458 3.38535 3.42177 3.84266 4.19967 4.46716 4.50772 4.60360 4.78351 4.79760 4.83600 4.96623 5.05662 5.20345 5.28331 5.31674 5.35943 5.46949 5.52717 5.62366 5.66817 5.72005 5.76694 5.78089 5.83262 5.92416 5.99753 6.06796 6.10800 6.17093 6.20806 6.57687 6.60378 6.93730 7.01947 7.12393 7.24710 7.36639 7.46033 7.59754 7.82461 8.57269 9.03513 9.60532 11.11478 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044697 B = 0.003864 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.286326 B = 7244.554452 C = 7349.681669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.058 3.942 12 N -0.684 5.684 13 C 0.100 3.900 14 H 0.068 0.932 15 C -0.185 4.185 16 C 0.070 3.930 17 N -0.548 5.548 18 C 0.069 3.931 19 C -0.154 4.154 20 C -0.107 4.107 21 C -0.110 4.110 22 H 0.082 0.918 23 C 0.070 3.930 24 H 0.262 0.738 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.337 0.663 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.070 -11.836 1.869 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.314 5.314 13 C -0.011 4.011 14 H 0.086 0.914 15 C -0.226 4.226 16 C -0.058 4.058 17 N -0.269 5.269 18 C -0.059 4.059 19 C -0.193 4.193 20 C -0.145 4.145 21 C -0.130 4.130 22 H 0.101 0.899 23 C -0.058 4.058 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.756 -12.160 1.478 24.967 hybrid contribution 0.800 2.102 0.387 2.283 sum 22.556 -10.058 1.865 24.767 Atomic orbital electron populations 1.69917 1.06285 1.26819 1.51377 1.25041 0.94732 0.99154 0.94664 0.86769 0.80289 0.83668 0.78473 1.20305 1.21418 1.19153 1.21158 0.89534 0.94460 1.50481 0.91014 1.19541 0.97156 0.92334 0.96030 1.21435 0.91121 0.99598 1.01532 1.22174 0.97535 0.87789 0.99615 1.60797 1.05990 1.14994 1.49607 1.21287 0.88487 0.97337 0.93969 0.91362 1.22714 1.02457 0.99371 0.98028 1.21690 1.01128 0.87149 0.95871 1.60250 1.04926 1.38817 1.22904 1.21716 0.87412 0.98513 0.98303 1.22009 0.99424 1.00701 0.97153 1.21276 0.94426 1.02041 0.96761 1.21453 0.95106 0.95843 1.00605 0.89926 1.21935 0.99145 0.96735 0.88002 0.92783 0.97120 0.96930 0.93075 0.91971 0.91694 0.95912 0.84456 0.91428 0.91950 0.91289 0.90934 0.91427 0.91206 0.91736 0.92559 0.92326 0.92087 0.90979 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 11 C 0.06 0.94 5.42 -3.82 -0.02 0.92 16 12 N -0.68 -9.46 6.03 -106.80 -0.64 -10.10 16 13 C 0.10 1.17 2.11 -68.21 -0.14 1.02 16 14 H 0.07 0.87 7.73 -51.34 -0.40 0.47 16 15 C -0.19 -1.97 4.62 -27.51 -0.13 -2.10 16 16 C 0.07 0.70 5.53 -4.78 -0.03 0.67 16 17 N -0.55 -5.40 4.79 -236.58 -1.13 -6.54 16 18 C 0.07 0.58 5.76 -4.80 -0.03 0.55 16 19 C -0.15 -1.26 5.12 -27.54 -0.14 -1.40 16 20 C -0.11 -0.95 5.37 -27.41 -0.15 -1.10 16 21 C -0.11 -1.13 2.57 -91.19 -0.23 -1.37 16 22 H 0.08 0.94 8.23 -51.35 -0.42 0.52 16 23 C 0.07 0.70 5.60 -4.02 -0.02 0.67 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 26 H 0.01 0.30 7.18 -51.93 -0.37 -0.07 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 30 H 0.02 0.37 7.10 -51.93 -0.37 0.00 16 31 H 0.34 4.54 7.45 -39.29 -0.29 4.24 16 32 H 0.07 0.69 5.70 -52.06 -0.30 0.39 16 33 H 0.06 0.74 7.06 -51.07 -0.36 0.38 16 34 H 0.07 0.64 8.10 -51.55 -0.42 0.22 16 35 H 0.07 0.76 7.72 -51.58 -0.40 0.36 16 36 H 0.07 0.53 8.10 -51.55 -0.42 0.11 16 37 H 0.07 0.55 8.20 -51.54 -0.42 0.13 16 38 H 0.06 0.56 5.73 -52.06 -0.30 0.27 16 39 H 0.06 0.40 8.27 -51.04 -0.42 -0.02 16 40 H 0.06 0.53 8.16 -51.55 -0.42 0.11 16 41 H 0.06 0.50 8.20 -51.56 -0.42 0.08 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.08 0.89 7.62 -52.07 -0.40 0.49 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -30.15 316.56 -10.28 -40.43 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.79 Total: -0.12 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.58 Total: -18.27 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -1.01 Total: -44.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.15 -10.28 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394948736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds