Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47301 * 110.99826 * 180.02562 * 12 11 10 14 14 H 1.10030 * 107.74734 * 324.99250 * 13 12 11 15 15 C 1.52232 * 109.53242 * 83.10938 * 13 12 11 16 16 C 1.52238 * 112.71225 * 77.31934 * 15 13 12 17 17 N 1.45860 * 112.35963 * 46.94420 * 16 15 13 18 18 C 1.45831 * 113.95606 * 70.28095 * 17 16 15 19 19 C 1.52225 * 112.58844 * 288.86233 * 18 17 16 20 20 C 1.52180 * 112.77855 * 313.82035 * 19 18 17 21 21 C 1.52363 * 109.58077 * 206.92767 * 13 12 11 22 22 H 1.10013 * 108.73486 * 48.65531 * 21 13 12 23 23 C 1.46526 * 111.96697 * 301.85462 * 17 16 15 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 30 30 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 31 31 H 1.00894 * 110.99644 * 303.95540 * 12 11 10 32 32 H 1.08758 * 110.70205 * 201.88270 * 15 13 12 33 33 H 1.10507 * 108.08955 * 317.98777 * 15 13 12 34 34 H 1.09664 * 109.11335 * 168.25080 * 16 15 13 35 35 H 1.09615 * 109.18319 * 285.56634 * 16 15 13 36 36 H 1.09673 * 109.18633 * 50.17044 * 18 17 16 37 37 H 1.09678 * 109.20979 * 167.45134 * 18 17 16 38 38 H 1.08762 * 110.78357 * 78.70457 * 19 18 17 39 39 H 1.10556 * 107.89113 * 194.66969 * 19 18 17 40 40 H 1.09677 * 109.20942 * 166.14064 * 20 19 18 41 41 H 1.09658 * 109.33025 * 283.63305 * 20 19 18 42 42 H 1.09013 * 109.70154 * 183.83955 * 23 17 16 43 43 H 1.08750 * 110.07106 * 304.59230 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 7 6.0415 -4.0213 0.0150 13 6 7.5139 -4.0604 0.0158 14 1 7.8723 -3.2141 -0.5891 15 6 8.0268 -3.8954 1.4396 16 6 7.8984 -5.1700 2.2620 17 7 8.3821 -6.3443 1.5447 18 6 9.8294 -6.3760 1.3686 19 6 10.3193 -5.3408 0.3658 20 6 9.4889 -5.3166 -0.9092 21 6 7.9906 -5.3564 -0.6282 22 1 7.4572 -5.4948 -1.5804 23 6 7.6704 -6.5457 0.2799 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.6580 -3.1457 0.9010 28 1 3.6588 -3.1546 -0.8790 29 1 5.9150 -2.1270 -0.8841 30 1 5.9150 -2.1179 0.8958 31 1 5.6660 -4.5338 0.7988 32 1 9.0548 -3.5405 1.4392 33 1 7.4264 -3.1088 1.9315 34 1 8.4669 -5.0556 3.1928 35 1 6.8468 -5.3196 2.5328 36 1 10.3142 -6.1958 2.3357 37 1 10.1300 -7.3751 1.0302 38 1 10.3602 -4.3532 0.8196 39 1 11.3585 -5.5992 0.0911 40 1 9.7229 -4.4066 -1.4750 41 1 9.7599 -6.1752 -1.5352 42 1 8.0122 -7.4673 -0.1915 43 1 6.5993 -6.6018 0.4592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394948736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -38.782995 kcal Electronic energy + Delta-G solvation = -19282.147915 eV Core-core repulsion = 16552.851854 eV Total energy + Delta-G solvation = -2729.296061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54778 -37.65096 -35.57786 -34.13428 -33.85987 -31.80315 -31.38046 -28.37375 -26.24289 -24.83680 -23.96692 -23.09565 -21.95447 -21.85511 -19.15589 -18.90193 -17.28478 -16.59106 -16.42642 -16.06086 -15.85234 -15.68513 -15.43478 -14.84092 -14.75863 -14.42889 -13.93783 -13.78295 -13.59807 -13.45072 -13.22575 -12.80846 -12.71417 -12.55622 -12.36239 -12.16948 -11.95590 -11.81136 -11.73038 -11.50303 -11.46832 -11.28376 -11.14003 -10.79677 -10.77623 -9.33020 -8.93899 -8.30429 -6.34881 1.34608 1.36542 1.48632 2.35233 3.04629 3.09767 3.14184 3.76519 3.79041 3.90817 4.04153 4.07703 4.18048 4.20540 4.30275 4.34579 4.44708 4.53392 4.60232 4.64027 4.71013 4.75556 4.84761 4.92792 4.95515 4.98538 5.03891 5.08034 5.09403 5.17221 5.23556 5.27009 5.32969 5.43484 5.50674 5.59650 5.65190 6.11772 6.26177 6.28887 6.40278 6.46288 6.73384 7.29738 8.86684 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044697 B = 0.003864 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.286326 B = 7244.554452 C = 7349.681669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.090 4.090 11 C 0.072 3.928 12 N -0.687 5.687 13 C 0.102 3.898 14 H 0.060 0.940 15 C -0.177 4.177 16 C 0.071 3.929 17 N -0.553 5.553 18 C 0.067 3.933 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.105 4.105 22 H 0.070 0.930 23 C 0.072 3.928 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.340 0.660 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.973 -11.447 2.100 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.057 4.057 12 N -0.317 5.317 13 C -0.008 4.008 14 H 0.078 0.922 15 C -0.217 4.217 16 C -0.057 4.057 17 N -0.275 5.275 18 C -0.061 4.061 19 C -0.190 4.190 20 C -0.143 4.143 21 C -0.126 4.126 22 H 0.088 0.912 23 C -0.056 4.056 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.158 0.842 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.683 -11.795 1.710 27.410 hybrid contribution -0.166 1.870 0.308 1.902 sum 24.516 -9.925 2.018 26.526 Atomic orbital electron populations 1.70075 1.08358 1.28210 1.52701 1.26070 0.95668 1.03686 0.94071 0.85599 0.79419 0.77995 0.79252 1.19087 1.20834 1.17026 1.21518 0.92258 0.93074 1.50381 0.95241 1.19483 0.93809 0.95057 0.96384 1.21253 0.93982 0.96856 1.00675 1.21881 0.94489 0.89369 0.99931 1.60743 1.07658 1.13422 1.49921 1.21331 0.86838 0.97879 0.94776 0.92188 1.22635 1.02641 0.99409 0.97060 1.21673 1.00912 0.86912 0.96211 1.60257 1.05900 1.38610 1.22684 1.21794 0.86361 0.99066 0.98904 1.21961 1.00059 1.00396 0.96547 1.21261 0.93216 1.02417 0.97405 1.21402 0.96160 0.95164 0.99855 0.91167 1.21894 0.98585 0.96978 0.88176 0.92462 0.96385 0.96287 0.93575 0.93306 0.91599 0.95324 0.84201 0.90496 0.93076 0.90242 0.91816 0.90612 0.90417 0.92183 0.91042 0.92527 0.91112 0.90024 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.76 6.53 99.48 0.65 -10.11 16 7 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 11 C 0.07 2.29 5.42 86.30 0.47 2.75 16 12 N -0.69 -18.45 6.03 -491.80 -2.97 -21.41 16 13 C 0.10 2.24 2.11 44.37 0.09 2.34 16 14 H 0.06 1.44 7.73 -1.84 -0.01 1.42 16 15 C -0.18 -3.46 4.62 30.09 0.14 -3.32 16 16 C 0.07 1.31 5.53 86.25 0.48 1.78 16 17 N -0.55 -9.83 4.79 -902.42 -4.33 -14.16 16 18 C 0.07 0.94 5.76 86.25 0.50 1.44 16 19 C -0.15 -2.05 5.12 30.07 0.15 -1.89 16 20 C -0.10 -1.63 5.37 30.16 0.16 -1.47 16 21 C -0.11 -2.02 2.57 -11.17 -0.03 -2.05 16 22 H 0.07 1.53 8.23 -1.85 -0.02 1.51 16 23 C 0.07 1.33 5.60 86.38 0.48 1.81 16 24 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.02 0.83 7.58 -2.39 -0.02 0.81 16 26 H 0.02 0.88 7.18 -2.39 -0.02 0.87 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 30 H 0.03 0.88 7.10 -2.39 -0.02 0.86 16 31 H 0.34 8.95 7.45 -89.70 -0.67 8.28 16 32 H 0.08 1.39 5.70 -2.51 -0.01 1.37 16 33 H 0.05 1.12 7.06 -1.58 -0.01 1.11 16 34 H 0.08 1.30 8.10 -2.03 -0.02 1.28 16 35 H 0.06 1.28 7.72 -2.06 -0.02 1.26 16 36 H 0.08 0.97 8.10 -2.03 -0.02 0.95 16 37 H 0.08 1.00 8.20 -2.03 -0.02 0.98 16 38 H 0.06 0.88 5.73 -2.51 -0.01 0.87 16 39 H 0.07 0.79 8.27 -1.55 -0.01 0.78 16 40 H 0.06 0.91 8.16 -2.03 -0.02 0.90 16 41 H 0.07 0.98 8.20 -2.04 -0.02 0.97 16 42 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.07 1.47 7.62 -2.52 -0.02 1.45 16 Total: -1.00 -65.19 316.56 -1.40 -66.59 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.27 Total: 16.24 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.44 Total: -33.38 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -6.99 Total: -96.32 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -65.19 -1.40 -66.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394948736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.802 kcal (2) G-P(sol) polarization free energy of solvation -65.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds