Wall clock time and date at job start Mon Mar 30 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46852 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.50037 * 110.99717 * 289.78246 * 13 12 11 15 15 C 1.51538 * 102.45737 * 212.65547 * 14 13 12 16 16 H 1.08997 * 111.53736 * 287.99730 * 15 14 13 17 17 C 1.51571 * 123.29335 * 151.72732 * 15 14 13 18 18 C 1.56330 * 101.81829 * 207.91614 * 17 15 14 19 19 C 1.55994 * 105.77746 * 25.42955 * 18 17 15 20 20 H 1.08998 * 110.64307 * 248.25555 * 19 18 17 21 21 N 1.46894 * 110.52519 * 125.56788 * 19 18 17 22 22 C 1.49725 * 103.99028 * 6.93588 * 19 18 17 23 23 H 1.09004 * 108.54516 * 76.85933 * 22 19 18 24 24 C 1.49690 * 110.99992 * 170.00127 * 13 12 11 25 25 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 27 27 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 28 28 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 29 29 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 30 30 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 31 31 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 32 32 H 1.08998 * 109.47443 * 300.00617 * 12 11 10 33 33 H 1.09003 * 109.47343 * 59.99920 * 12 11 10 34 34 H 1.08999 * 110.80914 * 330.89712 * 14 13 12 35 35 H 1.08999 * 110.81107 * 94.41407 * 14 13 12 36 36 H 1.08998 * 110.96046 * 89.78227 * 17 15 14 37 37 H 1.09006 * 110.95959 * 326.05127 * 17 15 14 38 38 H 1.08998 * 110.18454 * 266.34704 * 18 17 15 39 39 H 1.09009 * 110.18568 * 144.50897 * 18 17 15 40 40 H 1.00893 * 111.00412 * 65.42579 * 21 19 18 41 41 H 1.00902 * 110.99849 * 189.38340 * 21 19 18 42 42 H 1.08998 * 110.39825 * 234.10266 * 24 13 12 43 43 H 1.08996 * 110.40330 * 356.40906 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0005 14 6 1.0614 -7.6511 1.3178 15 6 1.1135 -9.1593 1.4547 16 1 0.4248 -9.6478 0.7654 17 6 1.1455 -9.8727 2.7917 18 6 1.9051 -11.1912 2.4329 19 6 2.7807 -10.8508 1.1876 20 1 2.4151 -11.3765 0.3055 21 7 4.1880 -11.1878 1.4398 22 6 2.6164 -9.3718 1.0229 23 1 3.2290 -8.8694 1.7715 24 6 2.6639 -8.5748 -0.2438 25 1 -0.4850 -0.8401 0.0004 26 1 0.6247 -2.5570 0.8897 27 1 0.6242 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8904 29 1 2.8720 -3.6042 0.8895 30 1 0.8540 -5.0445 0.8903 31 1 0.8535 -5.0451 -0.8896 32 1 3.1007 -6.0923 -0.8909 33 1 3.1020 -6.0922 0.8890 34 1 1.6122 -7.1696 2.1257 35 1 0.0298 -7.3003 1.2882 36 1 0.1365 -10.0874 3.1434 37 1 1.6990 -9.2925 3.5301 38 1 1.1940 -11.9803 2.1886 39 1 2.5382 -11.4990 3.2652 40 1 4.3070 -12.1834 1.5520 41 1 4.7820 -10.8332 0.7053 42 1 2.3108 -9.1739 -1.0831 43 1 3.6762 -8.2173 -0.4321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395402460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:19 Heat of formation + Delta-G solvation = -33.502663 kcal Electronic energy + Delta-G solvation = -18620.554877 eV Core-core repulsion = 15891.487788 eV Total energy + Delta-G solvation = -2729.067089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53764 -37.89916 -36.42319 -34.58220 -33.56815 -31.25545 -29.84111 -28.54776 -26.06295 -25.89833 -23.83229 -22.16981 -21.65856 -21.34224 -20.40136 -18.88528 -17.44570 -16.77489 -16.40149 -16.13010 -15.78984 -15.68311 -15.58588 -15.13193 -14.82318 -14.34585 -14.16671 -13.75434 -13.58042 -13.35796 -12.73401 -12.62486 -12.54819 -12.42662 -12.26620 -12.13993 -11.93522 -11.89348 -11.69191 -11.67172 -11.51426 -11.39805 -11.05228 -10.63131 -10.56396 -9.64179 -9.39800 -8.71407 -6.41646 1.50792 1.61201 1.77802 2.55261 2.80061 2.98372 3.13916 3.44096 3.66493 3.93028 3.99549 4.03462 4.15173 4.21354 4.27561 4.33708 4.41764 4.45139 4.47664 4.60680 4.63372 4.67816 4.76889 4.78019 4.90029 4.93425 5.00825 5.05424 5.09291 5.13148 5.17070 5.19083 5.27776 5.41235 5.44999 5.53571 5.80827 5.99100 5.99561 6.17391 6.26264 6.56076 6.58635 7.41259 8.69457 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049537 B = 0.003173 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.096798 B = 8823.132969 C = 9037.200655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.125 2.875 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.621 4.621 8 H 0.050 0.950 9 C 0.008 3.992 10 C -0.091 4.091 11 C -0.100 4.100 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.050 3.950 15 C -0.109 4.109 16 H 0.089 0.911 17 C -0.103 4.103 18 C -0.111 4.111 19 C 0.112 3.888 20 H 0.048 0.952 21 N -0.852 5.852 22 C -0.123 4.123 23 H 0.056 0.944 24 C 0.058 3.942 25 H 0.255 0.745 26 H -0.015 1.015 27 H -0.013 1.013 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.350 0.650 41 H 0.346 0.654 42 H 0.083 0.917 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -25.800 2.943 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.946 3.054 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.659 4.659 8 H 0.069 0.931 9 C -0.029 4.029 10 C -0.129 4.129 11 C -0.138 4.138 12 C -0.067 4.067 13 N -0.260 5.260 14 C -0.077 4.077 15 C -0.129 4.129 16 H 0.108 0.892 17 C -0.142 4.142 18 C -0.149 4.149 19 C 0.000 4.000 20 H 0.066 0.934 21 N -0.383 5.383 22 C -0.143 4.143 23 H 0.075 0.925 24 C -0.069 4.069 25 H 0.064 0.936 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.101 0.899 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.573 -23.699 3.182 24.553 hybrid contribution 0.413 -1.876 -0.277 1.941 sum 5.985 -25.576 2.905 26.427 Atomic orbital electron populations 1.70858 1.07970 1.29858 1.48965 1.27551 0.96662 1.07095 0.92650 0.82851 0.74214 0.70715 0.77669 1.19368 1.20246 1.20223 1.22591 0.94723 0.93584 1.54979 0.93138 1.19187 0.95161 0.94711 0.93869 1.21299 0.97761 0.93397 1.00431 1.21432 0.97989 0.93065 1.01306 1.22200 0.94947 0.88860 1.00679 1.65127 1.28250 1.01730 1.30914 1.22519 0.99496 0.95891 0.89767 1.22478 0.96967 0.94307 0.99110 0.89227 1.21880 1.00995 0.96094 0.95200 1.22980 0.97653 0.97119 0.97126 1.21055 0.89141 0.92768 0.96993 0.93391 1.58826 1.06148 1.20569 1.52798 1.22019 0.97685 0.96745 0.97873 0.92517 1.21992 0.95637 0.91800 0.97455 0.93571 0.99621 0.99491 0.92961 0.93374 0.93215 0.92590 0.90429 0.94998 0.93924 0.90643 0.90234 0.92117 0.90204 0.90705 0.83608 0.84098 0.89869 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.65 21.45 0.29 -60.10 16 2 C -0.04 -2.58 5.46 84.65 0.46 -2.11 16 3 Si 1.12 51.86 29.90 68.60 2.05 53.91 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.62 -37.20 9.11 25.60 0.23 -36.97 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.01 0.43 4.28 29.85 0.13 0.56 16 10 C -0.09 -3.94 5.15 30.60 0.16 -3.78 16 11 C -0.10 -3.61 5.28 30.60 0.16 -3.45 16 12 C 0.06 1.81 4.67 86.30 0.40 2.21 16 13 N -0.54 -14.06 5.28 -888.87 -4.69 -18.75 16 14 C 0.05 1.23 5.56 85.21 0.47 1.71 16 15 C -0.11 -2.07 3.13 -10.04 -0.03 -2.10 16 16 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 17 C -0.10 -1.64 6.59 31.28 0.21 -1.44 16 18 C -0.11 -1.47 6.74 32.79 0.22 -1.25 16 19 C 0.11 1.61 3.93 44.90 0.18 1.78 16 20 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 21 N -0.85 -11.00 9.21 -168.75 -1.55 -12.55 16 22 C -0.12 -2.28 2.21 -11.19 -0.02 -2.30 16 23 H 0.06 1.29 7.91 -2.38 -0.02 1.27 16 24 C 0.06 1.20 6.74 84.71 0.57 1.77 16 25 H 0.25 16.65 7.22 -92.71 -0.67 15.98 16 26 H -0.01 -0.85 8.01 -2.38 -0.02 -0.87 16 27 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 1.82 7.53 -2.39 -0.02 1.81 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.18 7.99 -2.39 -0.02 2.16 16 33 H 0.03 0.94 7.86 -2.39 -0.02 0.92 16 34 H 0.04 1.11 7.70 -2.39 -0.02 1.09 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 1.03 7.98 -2.38 -0.02 1.01 16 40 H 0.35 3.22 9.08 -89.70 -0.81 2.40 16 41 H 0.35 4.04 9.00 -89.69 -0.81 3.23 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 Total: -1.00 -67.88 333.27 -1.32 -69.20 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.56 Total: 13.66 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 3.14 Total: -45.37 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -5.95 Total: -91.40 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Total: -67.88 -1.32 -69.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395402460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds