Wall clock time and date at job start Mon Mar 30 2020 04:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47132 * 2 1 4 4 C 1.35317 * 125.86750 * 125.31974 * 3 2 1 5 5 C 1.35349 * 106.17528 * 180.12151 * 4 3 2 6 6 C 1.50697 * 126.75011 * 179.85597 * 5 4 3 7 7 N 1.46905 * 109.47066 * 94.71461 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46897 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47515 * 180.02562 * 11 10 9 13 13 H 1.08011 * 119.99895 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00400 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00233 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99860 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47154 * 90.00205 * 16 14 12 18 18 H 1.48501 * 109.47128 * 210.00005 * 16 14 12 19 19 H 1.48494 * 109.47287 * 329.99529 * 16 14 12 20 20 N 1.33772 * 106.49378 * 359.59830 * 5 4 3 21 21 N 1.28632 * 108.88726 * 0.25906 * 20 5 4 22 22 H 1.08994 * 109.47237 * 299.99837 * 1 2 3 23 23 H 1.09007 * 109.46875 * 59.99554 * 1 2 3 24 24 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47055 * 240.00517 * 2 1 3 26 26 H 1.08997 * 109.47352 * 120.00236 * 2 1 3 27 27 H 1.08004 * 126.91223 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47558 * 334.71624 * 6 5 4 29 29 H 1.08998 * 109.47216 * 214.71286 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 34 34 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 35 35 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 36 36 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 37 37 H 1.08997 * 109.47664 * 300.00230 * 11 10 9 38 38 H 1.09005 * 109.47058 * 60.00267 * 11 10 9 39 39 H 0.96993 * 119.99802 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8804 1.9174 0.8947 5 6 3.0544 3.2075 0.5242 6 6 3.9239 4.2321 1.2063 7 7 5.2395 4.2702 0.5538 8 6 6.1162 5.2599 1.1941 9 6 7.4737 5.2710 0.4883 10 6 8.3865 6.3022 1.1549 11 6 9.7442 6.3129 0.4496 12 6 10.6436 7.3281 1.1064 13 1 10.2830 7.9075 1.9436 14 6 11.9267 7.5173 0.6387 15 7 12.7118 8.4030 1.2123 16 14 12.5500 6.5158 -0.8097 17 1 12.2492 7.2340 -2.0742 18 1 14.0176 6.3261 -0.6853 19 1 11.8790 5.1912 -0.8209 20 7 2.3073 3.3925 -0.5699 21 7 1.7060 2.2916 -0.8545 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3358 1.4173 1.7367 28 1 4.0465 3.9640 2.2557 29 1 3.4541 5.2130 1.1344 30 1 5.1479 4.4534 -0.4342 31 1 5.6618 6.2481 1.1225 32 1 6.2539 4.9984 2.2433 33 1 7.9282 4.2829 0.5596 34 1 7.3356 5.5328 -0.5607 35 1 7.9318 7.2901 1.0834 36 1 8.5246 6.0409 2.2041 37 1 10.1988 5.3249 0.5214 38 1 9.6064 6.5740 -0.5998 39 1 13.6143 8.5364 0.8830 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404510904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:35 Heat of formation + Delta-G solvation = 76.619856 kcal Electronic energy + Delta-G solvation = -17329.216134 eV Core-core repulsion = 14501.383973 eV Total energy + Delta-G solvation = -2827.832161 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.47283 -37.02567 -35.77044 -34.31285 -32.43169 -31.33381 -31.09885 -28.77342 -25.93892 -25.05818 -23.65883 -22.12267 -21.26944 -20.87863 -19.94089 -17.66069 -16.74426 -16.61398 -16.03502 -15.29647 -14.99263 -14.68309 -14.46311 -14.13070 -13.80784 -13.28143 -12.93037 -12.84371 -12.57403 -12.37996 -12.08016 -11.83031 -11.69173 -11.56052 -11.14134 -10.97233 -10.72245 -10.52466 -10.33561 -9.83570 -9.62958 -9.56830 -9.34638 -9.09799 -8.48349 -8.42165 -5.99073 -3.96416 1.36247 2.02935 2.29675 3.35393 3.42295 3.47369 3.90091 4.13603 4.25791 4.38947 4.50639 4.52030 4.65780 4.80848 4.97177 5.03425 5.23560 5.33316 5.35646 5.42716 5.45989 5.52837 5.73909 5.86853 5.92645 6.08886 6.15396 6.31179 6.42694 6.71647 6.81870 6.92472 7.10031 7.35815 7.40094 7.52884 7.86458 8.30063 8.60385 9.06334 9.64101 11.14516 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.051767 B = 0.002668 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.760339 B =10493.944255 C =10753.347554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.032 4.032 5 C -0.016 4.016 6 C 0.144 3.856 7 N -0.688 5.688 8 C 0.059 3.941 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.063 3.937 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 N -0.265 5.265 21 N -0.087 5.087 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.191 0.809 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.344 0.656 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.478 -18.691 0.151 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.184 4.184 5 C -0.154 4.154 6 C 0.013 3.987 7 N -0.320 5.320 8 C -0.069 4.069 9 C -0.156 4.156 10 C -0.139 4.139 11 C -0.052 4.052 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 N -0.133 5.133 21 N -0.066 5.066 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.208 0.792 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.894 -18.845 -0.751 31.232 hybrid contribution 0.702 -0.086 -0.097 0.713 sum -24.193 -18.931 -0.847 30.731 Atomic orbital electron populations 1.22083 0.92674 1.03727 1.04061 1.22099 0.96919 0.76539 1.05349 1.47459 1.30489 1.11992 1.18946 1.23416 0.99488 0.95494 0.99962 1.21913 1.01966 0.94827 0.96714 1.20082 0.87117 0.94330 0.97139 1.60560 1.10803 1.52773 1.07872 1.22075 0.93365 0.92355 0.99121 1.21667 0.93866 1.00789 0.99307 1.21413 0.96147 0.96962 0.99388 1.19576 0.92860 0.97106 0.95663 1.21196 0.97063 1.20501 1.16912 0.91117 1.25058 0.96827 0.95042 0.96799 1.69925 1.08138 1.34697 1.41776 0.86754 0.77731 0.81488 0.83178 1.20364 1.21482 1.18964 1.75067 1.08723 1.16086 1.13392 1.78242 1.20978 0.92856 1.14557 0.91733 0.90641 0.89850 0.88257 0.87596 0.79235 0.89311 0.93346 0.83769 0.95095 0.90928 0.91685 0.92703 0.92998 0.92787 0.96665 0.97193 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.04 37.16 0.37 -0.25 16 2 C 0.11 0.47 7.18 -4.04 -0.03 0.44 16 3 N -0.29 -2.61 3.44 -61.26 -0.21 -2.82 16 4 C -0.03 -0.29 11.50 -17.04 -0.20 -0.48 16 5 C -0.02 -0.18 6.76 -82.78 -0.56 -0.74 16 6 C 0.14 1.55 6.25 -4.97 -0.03 1.52 16 7 N -0.69 -8.63 6.49 -115.05 -0.75 -9.38 16 8 C 0.06 0.80 5.69 -3.82 -0.02 0.78 16 9 C -0.12 -1.93 5.47 -26.73 -0.15 -2.07 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.15 16 11 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 12 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 13 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 16 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 20 N -0.27 -3.67 12.41 33.29 0.41 -3.26 16 21 N -0.09 -1.08 12.91 60.35 0.78 -0.30 16 22 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.07 0.41 8.12 -51.92 -0.42 -0.01 16 24 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.11 0.16 8.07 -51.93 -0.42 -0.26 16 27 H 0.19 1.01 8.06 -52.48 -0.42 0.58 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.34 4.51 8.72 -39.29 -0.34 4.17 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -34.57 328.24 -6.61 -41.19 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.61 Total: -3.09 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.29 Total: -17.16 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 1.01 Total: -43.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.57 -6.61 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404510904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.807 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds