Wall clock time and date at job start Mon Mar 30 2020 03:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99730 * 2 1 4 4 C 1.52997 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46969 * 65.00165 * 4 3 2 6 6 C 1.36929 * 119.99978 * 90.00289 * 5 4 3 7 7 H 1.08000 * 120.00340 * 37.22306 * 6 5 4 8 8 C 1.38813 * 119.99900 * 216.94515 * 6 5 4 9 9 N 1.31616 * 120.00490 * 213.43213 * 8 6 5 10 10 Si 1.86800 * 119.99795 * 33.43432 * 8 6 5 11 11 H 1.48497 * 109.47453 * 95.66193 * 10 8 6 12 12 H 1.48499 * 109.47315 * 215.66439 * 10 8 6 13 13 H 1.48507 * 109.47166 * 335.66237 * 10 8 6 14 14 C 1.46500 * 119.99692 * 269.99946 * 5 4 3 15 15 C 1.52997 * 109.47485 * 274.44338 * 14 5 4 16 16 C 1.47200 * 110.01680 * 65.22661 * 15 14 5 17 17 N 4.66631 * 156.25458 * 114.42161 * 2 1 3 18 18 C 1.54265 * 110.03192 * 303.84005 * 15 14 5 19 19 C 1.54970 * 104.15875 * 217.13549 * 18 15 14 20 20 C 1.54891 * 102.77661 * 37.88565 * 19 18 15 21 21 C 1.53865 * 110.03441 * 186.61902 * 15 14 5 22 22 H 1.08994 * 109.47648 * 59.99895 * 1 2 3 23 23 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47119 * 299.99561 * 1 2 3 25 25 H 1.09001 * 109.47459 * 60.00428 * 3 2 1 26 26 H 1.09007 * 109.47496 * 300.00293 * 3 2 1 27 27 H 1.08995 * 109.47278 * 305.00332 * 4 3 2 28 28 H 1.09000 * 109.47708 * 184.99928 * 4 3 2 29 29 H 0.97005 * 119.99692 * 0.02562 * 9 8 6 30 30 H 1.09002 * 109.47035 * 34.44809 * 14 5 4 31 31 H 1.09002 * 109.46858 * 154.44068 * 14 5 4 32 32 H 1.09005 * 110.48595 * 335.78095 * 18 15 14 33 33 H 1.08999 * 110.48910 * 98.42643 * 18 15 14 34 34 H 1.09004 * 110.71522 * 279.57024 * 19 18 15 35 35 H 1.08998 * 110.76284 * 156.22415 * 19 18 15 36 36 H 1.08998 * 110.48460 * 203.40913 * 20 19 18 37 37 H 1.08991 * 110.48489 * 80.76341 * 20 19 18 38 38 H 1.08999 * 110.03723 * 238.57022 * 21 15 14 39 39 H 1.09001 * 110.03584 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2660 1.3462 -2.3389 7 1 4.7514 2.3013 -2.2027 8 6 3.9416 0.9085 -3.6157 9 7 4.7112 1.2253 -4.6354 10 14 2.4129 -0.1303 -3.8867 11 1 1.2866 0.7448 -4.2997 12 1 2.6773 -1.1321 -4.9504 13 1 2.0595 -0.8295 -2.6250 14 6 4.1052 -0.8919 -1.3428 15 6 5.4851 -1.3137 -0.8340 16 6 5.6070 -1.0109 0.6014 17 7 5.7003 -0.7769 1.7109 18 6 6.5872 -0.5786 -1.6244 19 6 7.7125 -1.6331 -1.7759 20 6 6.9232 -2.9460 -2.0049 21 6 5.6987 -2.8182 -1.0753 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8514 0.5683 0.8408 28 1 3.9785 2.1766 0.0889 29 1 5.5052 1.7644 -4.4946 30 1 3.3337 -1.3636 -0.7342 31 1 3.9900 -1.2035 -2.3810 32 1 6.2160 -0.2738 -2.6030 33 1 6.9458 0.2856 -1.0653 34 1 8.3085 -1.6945 -0.8653 35 1 8.3420 -1.4057 -2.6362 36 1 7.5274 -3.8084 -1.7235 37 1 6.6062 -3.0240 -3.0447 38 1 5.8934 -3.3241 -0.1297 39 1 4.8192 -3.2481 -1.5545 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405177140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:54 Heat of formation + Delta-G solvation = -8.338196 kcal Electronic energy + Delta-G solvation = -20032.154747 eV Core-core repulsion = 17168.345777 eV Total energy + Delta-G solvation = -2863.808970 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.97708 -37.34514 -35.19782 -35.10506 -31.85052 -30.39962 -28.48510 -28.01228 -25.86241 -24.52232 -23.06530 -21.08358 -20.27289 -20.06954 -17.70920 -16.29248 -15.89248 -15.50288 -15.12851 -14.65672 -14.13379 -14.07801 -13.86436 -13.27645 -13.22018 -12.89937 -12.48111 -12.39749 -12.08740 -11.71338 -11.39894 -11.26459 -10.83576 -10.80744 -10.71439 -10.67180 -10.50126 -10.36345 -10.21130 -10.09242 -9.99144 -9.59840 -9.30799 -9.08035 -8.31752 -7.01259 -6.29224 -3.38382 3.37484 3.39983 3.48616 3.55863 3.76418 4.37824 4.52859 4.59399 4.85982 5.09167 5.19023 5.33393 5.36990 5.56762 5.66660 5.80058 5.86791 5.90916 5.93167 5.99499 6.03683 6.07180 6.10806 6.17995 6.24648 6.29594 6.43640 6.49546 6.55428 6.67659 6.72133 6.79610 6.84929 7.19558 7.73584 8.14856 8.20491 8.47865 9.01537 9.60493 10.24989 11.00110 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.011388 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.278821 B = 2458.204715 C = 3306.726898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.041 3.959 4 C 0.142 3.858 5 N -0.588 5.588 6 C -0.363 4.363 7 H 0.059 0.941 8 C 0.012 3.988 9 N -0.895 5.895 10 Si 1.018 2.982 11 H -0.300 1.300 12 H -0.293 1.293 13 H -0.261 1.261 14 C 0.171 3.829 15 C 0.001 3.999 16 C 0.248 3.752 17 N -0.476 5.476 18 C -0.087 4.087 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.111 4.111 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.268 0.732 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -6.202 4.764 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.038 4.038 4 C 0.015 3.985 5 N -0.308 5.308 6 C -0.491 4.491 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.531 5.531 10 Si 0.847 3.153 11 H -0.228 1.228 12 H -0.220 1.220 13 H -0.186 1.186 14 C 0.043 3.957 15 C -0.005 4.005 16 C -0.069 4.069 17 N -0.152 5.152 18 C -0.126 4.126 19 C -0.169 4.169 20 C -0.158 4.158 21 C -0.150 4.150 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.980 -6.751 5.290 8.802 hybrid contribution 0.385 1.167 0.774 1.452 sum -1.595 -5.585 6.064 8.397 Atomic orbital electron populations 1.22633 0.82961 1.01731 0.99139 1.87921 1.18047 1.28713 1.95170 1.23423 0.97869 0.83998 0.98549 1.21122 0.89376 0.97861 0.90151 1.44007 1.76212 1.01000 1.09631 1.19867 1.38659 1.05286 0.85300 0.92332 1.26153 1.01236 1.00496 0.91449 1.70941 1.13640 1.34447 1.34040 0.84436 0.77843 0.76876 0.76132 1.22849 1.22022 1.18567 1.21341 0.89733 0.85273 0.99396 1.19987 1.02720 0.95697 0.82105 1.29298 0.91356 0.91539 0.94672 1.81139 1.10716 1.10304 1.13048 1.22319 0.91978 0.96004 1.02298 1.22631 0.97956 0.95562 1.00785 1.22331 0.95993 0.97514 0.99982 1.22205 0.99325 0.93666 0.99804 0.94602 0.90495 0.95101 0.95386 0.93044 0.93566 0.92048 0.92208 0.92697 0.91113 0.87352 0.92138 0.92615 0.91476 0.92075 0.90934 0.91995 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.28 9.46 -35.23 -0.33 -7.62 16 3 C 0.04 0.77 6.28 37.16 0.23 1.00 16 4 C 0.14 2.91 5.73 -4.04 -0.02 2.89 16 5 N -0.59 -13.01 1.71 -173.24 -0.30 -13.31 16 6 C -0.36 -9.11 7.99 -15.06 -0.12 -9.23 16 7 H 0.06 1.62 8.06 -52.49 -0.42 1.20 16 8 C 0.01 0.32 4.67 -17.43 -0.08 0.24 16 9 N -0.89 -24.98 13.71 55.49 0.76 -24.22 16 10 Si 1.02 23.96 26.63 -169.99 -4.53 19.43 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.26 -5.78 5.92 56.52 0.33 -5.45 16 14 C 0.17 3.46 2.54 -4.04 -0.01 3.45 16 15 C 0.00 0.02 0.67 -156.18 -0.10 -0.08 16 16 C 0.25 4.74 11.38 -20.70 -0.24 4.51 16 17 N -0.48 -9.70 18.04 42.22 0.76 -8.94 16 18 C -0.09 -1.60 4.99 -25.03 -0.12 -1.73 16 19 C -0.13 -1.96 6.91 -24.69 -0.17 -2.13 16 20 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 21 C -0.11 -1.62 6.09 -25.62 -0.16 -1.78 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.96 5.77 -51.93 -0.30 0.66 16 28 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 29 H 0.27 7.43 8.73 -40.82 -0.36 7.08 16 30 H 0.05 1.11 7.05 -51.93 -0.37 0.75 16 31 H 0.07 1.50 4.54 -51.93 -0.24 1.27 16 32 H 0.11 2.32 6.45 -51.93 -0.34 1.98 16 33 H 0.06 1.18 7.82 -51.93 -0.41 0.78 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 39 H 0.08 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -28.03 309.84 -5.12 -33.15 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.30 Total: -0.10 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 0.15 Total: -3.06 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 1.23 Total: -46.48 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.33 Total: -7.62 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.53 Total: 19.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.03 -5.12 -33.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405177140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.813 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds