Wall clock time and date at job start Mon Mar 30 2020 03:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99730 * 2 1 4 4 C 1.52997 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46969 * 65.00165 * 4 3 2 6 6 C 1.36929 * 119.99978 * 90.00289 * 5 4 3 7 7 H 1.08000 * 120.00340 * 37.22306 * 6 5 4 8 8 C 1.38813 * 119.99900 * 216.94515 * 6 5 4 9 9 N 1.31616 * 120.00490 * 213.43213 * 8 6 5 10 10 Si 1.86800 * 119.99795 * 33.43432 * 8 6 5 11 11 H 1.48497 * 109.47453 * 95.66193 * 10 8 6 12 12 H 1.48499 * 109.47315 * 215.66439 * 10 8 6 13 13 H 1.48507 * 109.47166 * 335.66237 * 10 8 6 14 14 C 1.46500 * 119.99692 * 269.99946 * 5 4 3 15 15 C 1.52997 * 109.47485 * 274.44338 * 14 5 4 16 16 C 1.47200 * 110.01680 * 65.22661 * 15 14 5 17 17 N 4.66631 * 156.25458 * 114.42161 * 2 1 3 18 18 C 1.54265 * 110.03192 * 303.84005 * 15 14 5 19 19 C 1.54970 * 104.15875 * 217.13549 * 18 15 14 20 20 C 1.54891 * 102.77661 * 37.88565 * 19 18 15 21 21 C 1.53865 * 110.03441 * 186.61902 * 15 14 5 22 22 H 1.08994 * 109.47648 * 59.99895 * 1 2 3 23 23 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47119 * 299.99561 * 1 2 3 25 25 H 1.09001 * 109.47459 * 60.00428 * 3 2 1 26 26 H 1.09007 * 109.47496 * 300.00293 * 3 2 1 27 27 H 1.08995 * 109.47278 * 305.00332 * 4 3 2 28 28 H 1.09000 * 109.47708 * 184.99928 * 4 3 2 29 29 H 0.97005 * 119.99692 * 0.02562 * 9 8 6 30 30 H 1.09002 * 109.47035 * 34.44809 * 14 5 4 31 31 H 1.09002 * 109.46858 * 154.44068 * 14 5 4 32 32 H 1.09005 * 110.48595 * 335.78095 * 18 15 14 33 33 H 1.08999 * 110.48910 * 98.42643 * 18 15 14 34 34 H 1.09004 * 110.71522 * 279.57024 * 19 18 15 35 35 H 1.08998 * 110.76284 * 156.22415 * 19 18 15 36 36 H 1.08998 * 110.48460 * 203.40913 * 20 19 18 37 37 H 1.08991 * 110.48489 * 80.76341 * 20 19 18 38 38 H 1.08999 * 110.03723 * 238.57022 * 21 15 14 39 39 H 1.09001 * 110.03584 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2660 1.3462 -2.3389 7 1 4.7514 2.3013 -2.2027 8 6 3.9416 0.9085 -3.6157 9 7 4.7112 1.2253 -4.6354 10 14 2.4129 -0.1303 -3.8867 11 1 1.2866 0.7448 -4.2997 12 1 2.6773 -1.1321 -4.9504 13 1 2.0595 -0.8295 -2.6250 14 6 4.1052 -0.8919 -1.3428 15 6 5.4851 -1.3137 -0.8340 16 6 5.6070 -1.0109 0.6014 17 7 5.7003 -0.7769 1.7109 18 6 6.5872 -0.5786 -1.6244 19 6 7.7125 -1.6331 -1.7759 20 6 6.9232 -2.9460 -2.0049 21 6 5.6987 -2.8182 -1.0753 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8514 0.5683 0.8408 28 1 3.9785 2.1766 0.0889 29 1 5.5052 1.7644 -4.4946 30 1 3.3337 -1.3636 -0.7342 31 1 3.9900 -1.2035 -2.3810 32 1 6.2160 -0.2738 -2.6030 33 1 6.9458 0.2856 -1.0653 34 1 8.3085 -1.6945 -0.8653 35 1 8.3420 -1.4057 -2.6362 36 1 7.5274 -3.8084 -1.7235 37 1 6.6062 -3.0240 -3.0447 38 1 5.8934 -3.3241 -0.1297 39 1 4.8192 -3.2481 -1.5545 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405177140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:54 Heat of formation + Delta-G solvation = -24.455623 kcal Electronic energy + Delta-G solvation = -20032.853651 eV Core-core repulsion = 17168.345777 eV Total energy + Delta-G solvation = -2864.507874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44948 -38.77030 -36.81466 -36.68250 -33.80849 -31.85086 -29.95533 -29.41982 -27.15136 -26.24239 -24.72715 -22.55477 -21.86233 -21.40411 -19.61211 -17.81764 -17.33280 -16.97692 -16.61747 -16.10917 -15.75264 -15.49069 -15.44687 -15.03947 -14.65063 -14.45506 -14.05940 -13.94867 -13.55104 -13.17972 -12.99604 -12.82085 -12.45908 -12.28436 -12.15476 -11.93645 -11.92203 -11.84606 -11.76993 -11.55283 -11.34529 -11.32250 -11.20403 -10.49499 -10.32411 -8.95095 -8.32174 -5.41086 1.59112 1.62394 1.83596 1.85049 1.90254 2.63854 3.00075 3.02696 3.13673 3.42773 3.82841 3.86134 4.10782 4.33605 4.39384 4.45290 4.50745 4.56552 4.59957 4.63906 4.66020 4.78042 4.80594 4.86953 4.89507 4.93550 5.05278 5.11463 5.13980 5.16685 5.29419 5.40885 5.51176 5.65609 6.03878 6.36727 6.45892 6.66227 7.03506 7.68245 8.27999 8.91954 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.011388 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.278821 B = 2458.204715 C = 3306.726898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.049 3.951 4 C 0.141 3.859 5 N -0.596 5.596 6 C -0.338 4.338 7 H 0.022 0.978 8 C -0.025 4.025 9 N -0.926 5.926 10 Si 1.057 2.943 11 H -0.307 1.307 12 H -0.293 1.293 13 H -0.239 1.239 14 C 0.170 3.830 15 C 0.004 3.996 16 C 0.257 3.743 17 N -0.496 5.496 18 C -0.085 4.085 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.108 4.108 22 H 0.034 0.966 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.255 0.745 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -8.379 5.764 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.030 4.030 4 C 0.015 3.985 5 N -0.318 5.318 6 C -0.468 4.468 7 H 0.039 0.961 8 C -0.225 4.225 9 N -0.565 5.565 10 Si 0.883 3.117 11 H -0.236 1.236 12 H -0.220 1.220 13 H -0.162 1.162 14 C 0.043 3.957 15 C -0.002 4.002 16 C -0.059 4.059 17 N -0.173 5.173 18 C -0.124 4.124 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.147 4.147 22 H 0.053 0.947 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.796 -8.942 6.325 11.304 hybrid contribution 0.648 1.928 0.547 2.107 sum -2.148 -7.013 6.873 10.052 Atomic orbital electron populations 1.22875 0.80657 1.03469 1.00093 1.87862 1.20550 1.28389 1.95361 1.23186 0.96310 0.84452 0.99047 1.21098 0.90980 0.97268 0.89183 1.44023 1.76822 1.01710 1.09220 1.19540 1.36735 1.04134 0.86374 0.96054 1.26903 1.02551 1.01751 0.91338 1.71030 1.14205 1.36384 1.34844 0.83922 0.74923 0.75887 0.76924 1.23585 1.21955 1.16203 1.21345 0.91282 0.83870 0.99185 1.19972 1.00912 0.98245 0.81117 1.29468 0.90786 0.90849 0.94752 1.81145 1.11268 1.11083 1.13779 1.22160 0.93658 0.96536 1.00035 1.22600 0.97009 0.95112 1.01599 1.22337 0.95491 0.97548 0.99806 1.22264 1.00637 0.90724 1.01099 0.94716 0.88448 0.93062 0.92768 0.94597 0.93528 0.92905 0.93544 0.92082 0.91875 0.90698 0.94459 0.91592 0.90894 0.89016 0.90938 0.90442 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -14.43 9.46 -148.98 -1.41 -15.84 16 3 C 0.05 1.78 6.28 71.98 0.45 2.23 16 4 C 0.14 5.74 5.73 86.38 0.50 6.24 16 5 N -0.60 -26.40 1.71 -702.00 -1.20 -27.60 16 6 C -0.34 -17.46 7.99 84.04 0.67 -16.79 16 7 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 8 C -0.02 -1.32 4.67 84.86 0.40 -0.93 16 9 N -0.93 -53.24 13.71 21.65 0.30 -52.94 16 10 Si 1.06 48.37 26.63 68.60 1.83 50.20 16 11 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.24 -9.94 5.92 99.48 0.59 -9.35 16 14 C 0.17 6.71 2.54 86.38 0.22 6.93 16 15 C 0.00 0.13 0.67 -53.27 -0.04 0.09 16 16 C 0.26 9.51 11.38 89.42 1.02 10.53 16 17 N -0.50 -19.61 18.04 20.03 0.36 -19.25 16 18 C -0.08 -3.12 4.99 31.70 0.16 -2.96 16 19 C -0.13 -3.52 6.91 31.91 0.22 -3.30 16 20 C -0.11 -2.72 6.83 31.67 0.22 -2.50 16 21 C -0.11 -2.83 6.09 31.32 0.19 -2.64 16 22 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.05 1.89 5.77 -2.39 -0.01 1.88 16 28 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 29 H 0.26 14.85 8.73 -92.70 -0.81 14.04 16 30 H 0.06 2.34 7.05 -2.39 -0.02 2.32 16 31 H 0.06 2.60 4.54 -2.39 -0.01 2.58 16 32 H 0.07 3.29 6.45 -2.38 -0.02 3.28 16 33 H 0.04 1.49 7.82 -2.39 -0.02 1.47 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 39 H 0.09 2.19 7.67 -2.39 -0.02 2.17 16 Total: -1.00 -60.90 309.84 5.99 -54.91 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.86 Total: 11.70 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.25 Total: -1.18 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -0.55 Total: -99.79 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.41 Total: -15.84 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.83 Total: 50.20 kcal Total: -60.90 5.99 -54.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405177140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.456 kcal (2) G-P(sol) polarization free energy of solvation -60.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds