Wall clock time and date at job start Mon Mar 30 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99661 * 2 1 4 4 C 1.53006 * 109.46883 * 269.99401 * 3 2 1 5 5 H 1.09003 * 109.64071 * 304.58555 * 4 3 2 6 6 C 1.53030 * 109.63956 * 65.00156 * 4 3 2 7 7 C 1.50062 * 110.14621 * 169.12029 * 6 4 3 8 8 C 1.29447 * 124.07710 * 342.86933 * 7 6 4 9 9 C 1.50073 * 124.07164 * 0.49233 * 8 7 6 10 10 C 1.53034 * 110.14276 * 342.82857 * 9 8 7 11 11 C 1.34774 * 120.00002 * 179.97438 * 2 1 3 12 12 O 1.21592 * 119.99643 * 180.02562 * 11 2 1 13 13 N 1.34767 * 120.00147 * 0.02562 * 11 2 1 14 14 C 1.46502 * 120.00062 * 179.97438 * 13 11 2 15 15 C 1.50703 * 109.47093 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99841 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00129 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00066 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46944 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47138 * 119.99801 * 19 17 15 22 22 H 1.48499 * 109.47351 * 240.00049 * 19 17 15 23 23 H 1.09003 * 109.47033 * 90.00622 * 1 2 3 24 24 H 1.09000 * 109.47241 * 210.00440 * 1 2 3 25 25 H 1.09000 * 109.47127 * 330.00198 * 1 2 3 26 26 H 1.09001 * 109.46891 * 149.99835 * 3 2 1 27 27 H 1.08993 * 109.47378 * 29.99208 * 3 2 1 28 28 H 1.08997 * 109.35928 * 289.32853 * 6 4 3 29 29 H 1.09001 * 109.35602 * 48.91159 * 6 4 3 30 30 H 1.08001 * 117.96521 * 162.84631 * 7 6 4 31 31 H 1.08000 * 117.96727 * 180.46901 * 8 7 6 32 32 H 1.09000 * 109.35968 * 103.05538 * 9 8 7 33 33 H 1.09005 * 109.35719 * 222.77511 * 9 8 7 34 34 H 1.08997 * 109.66070 * 289.77952 * 10 9 8 35 35 H 1.09001 * 109.63860 * 169.13687 * 10 9 8 36 36 H 0.96998 * 120.00474 * 359.97438 * 13 11 2 37 37 H 1.08997 * 109.46917 * 299.99816 * 14 13 11 38 38 H 1.09002 * 109.47457 * 59.99984 * 14 13 11 39 39 H 0.97003 * 120.00024 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.9709 0.9177 -1.9821 6 6 1.1199 2.0145 -2.1306 7 6 1.3609 2.6960 -3.4457 8 6 2.4781 3.2602 -3.7762 9 6 3.6918 3.3024 -2.8945 10 6 3.3039 2.9863 -1.4483 11 6 2.1389 -1.1672 0.0005 12 8 3.3548 -1.1671 0.0010 13 7 1.4651 -2.3343 0.0005 14 6 2.1976 -3.6030 0.0005 15 6 1.2183 -4.7485 0.0012 16 1 0.1565 -4.5512 0.0011 17 6 1.6779 -6.0484 0.0018 18 7 2.9710 -6.2887 0.0014 19 14 0.4641 -7.4683 0.0033 20 1 -0.9218 -6.9348 0.0042 21 1 0.6739 -8.3002 -1.2087 22 1 0.6751 -8.2987 1.2162 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.1498 1.1385 0.5139 27 1 1.6083 2.0284 0.5137 28 1 0.5799 1.0830 -2.3001 29 1 0.5231 2.6646 -1.4908 30 1 0.5521 2.7168 -4.1611 31 1 2.5408 3.7295 -4.7469 32 1 4.4174 2.5674 -3.2432 33 1 4.1357 4.2970 -2.9381 34 1 2.7273 3.8134 -1.0342 35 1 4.2037 2.8290 -0.8537 36 1 0.4951 -2.3344 0.0005 37 1 2.8242 -3.6608 -0.8895 38 1 2.8243 -3.6608 0.8905 39 1 3.2943 -7.2033 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426426963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:35 Heat of formation + Delta-G solvation = -27.530575 kcal Electronic energy + Delta-G solvation = -18707.486458 eV Core-core repulsion = 15842.845244 eV Total energy + Delta-G solvation = -2864.641214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75764 -38.33640 -35.14901 -34.16052 -32.46184 -31.46678 -30.68644 -27.43432 -27.09753 -24.91704 -23.19867 -22.33020 -21.07095 -19.20171 -18.02692 -17.65271 -16.27304 -15.96247 -15.83106 -14.94125 -14.64111 -14.37316 -13.88487 -13.50219 -13.23958 -13.15884 -12.88984 -12.71600 -12.38846 -12.30689 -11.95040 -11.86542 -11.71956 -11.33946 -10.90157 -10.89454 -10.63815 -10.56563 -10.27105 -10.15921 -9.32780 -9.28631 -9.03354 -8.70113 -8.31728 -7.67876 -6.12862 -4.19204 2.24289 3.25542 3.26808 3.33324 3.36910 3.96903 4.33875 4.65310 4.70594 4.77602 4.96248 5.17856 5.23262 5.24871 5.27191 5.31070 5.45900 5.53974 5.57548 5.61295 5.77085 5.80814 5.89212 5.92514 5.99632 6.08443 6.22797 6.44092 6.62109 6.87526 6.90580 7.19482 7.55989 7.58827 7.61311 7.89980 8.05581 8.79768 8.95680 9.37271 9.52049 10.97485 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.004176 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.726050 B = 6703.771202 C = 6773.353173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.641 5.641 3 C 0.143 3.857 4 C -0.105 4.105 5 H 0.079 0.921 6 C -0.085 4.085 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.090 4.090 10 C -0.112 4.112 11 C 0.694 3.306 12 O -0.598 6.598 13 N -0.729 5.729 14 C 0.266 3.734 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.386 0.614 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 18.969 -3.327 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.380 5.380 3 C 0.019 3.981 4 C -0.125 4.125 5 H 0.098 0.902 6 C -0.121 4.121 7 C -0.171 4.171 8 C -0.178 4.178 9 C -0.127 4.127 10 C -0.150 4.150 11 C 0.395 3.605 12 O -0.477 6.477 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.363 18.749 -3.315 19.534 hybrid contribution -1.193 -0.841 -0.209 1.475 sum -5.556 17.908 -3.524 19.078 Atomic orbital electron populations 1.21714 0.80721 1.02512 1.01246 1.47032 1.05772 1.05149 1.80035 1.21265 0.97615 0.83737 0.95522 1.21674 0.96028 0.97701 0.97110 0.90227 1.20565 0.97631 0.99900 0.94052 1.22095 0.97808 0.99044 0.98142 1.22034 0.95321 1.00819 0.99635 1.20439 0.96276 1.01554 0.94468 1.21576 0.99886 0.97173 0.96339 1.16099 0.85520 0.80505 0.78357 1.90859 1.11770 1.86273 1.58826 1.45851 1.09630 1.05707 1.77096 1.18973 0.92015 0.77005 0.97554 1.21262 0.92985 0.90742 1.52899 0.91986 1.24943 0.95382 0.98889 0.94801 1.69994 1.12544 1.20641 1.49114 0.86370 0.80935 0.81915 0.77724 1.19672 1.20821 1.20818 0.93099 0.91445 0.91550 0.89920 0.91335 0.90827 0.91223 0.88339 0.88398 0.90822 0.91350 0.91901 0.91340 0.78010 0.95794 0.95804 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.31 59.85 0.56 1.51 16 2 N -0.64 -10.06 2.74 -187.35 -0.51 -10.57 16 3 C 0.14 1.91 4.93 -4.04 -0.02 1.89 16 4 C -0.11 -1.33 2.45 -90.40 -0.22 -1.55 16 5 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 6 C -0.08 -0.93 4.65 -28.18 -0.13 -1.06 16 7 C -0.15 -1.64 9.80 -35.90 -0.35 -1.99 16 8 C -0.16 -1.66 9.80 -35.90 -0.35 -2.01 16 9 C -0.09 -0.91 6.12 -28.17 -0.17 -1.08 16 10 C -0.11 -1.17 5.31 -26.51 -0.14 -1.31 16 11 C 0.69 14.86 8.28 -86.93 -0.72 14.14 16 12 O -0.60 -15.27 15.92 5.28 0.08 -15.18 16 13 N -0.73 -16.19 5.41 -66.41 -0.36 -16.55 16 14 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 15 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.05 0.55 6.62 -51.93 -0.34 0.20 16 24 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 25 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 26 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 27 H 0.07 0.71 7.86 -51.93 -0.41 0.31 16 28 H 0.07 0.87 6.24 -51.93 -0.32 0.55 16 29 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.39 7.41 6.05 -40.82 -0.25 7.16 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -32.78 314.54 -8.53 -41.31 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.20 Total: 3.72 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.00 Total: 2.21 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.14 Total: -52.82 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.78 -8.53 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426426963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.783 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds