Wall clock time and date at job start Mon Mar 30 2020 04:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 H 1.09005 * 109.46706 * 304.33774 * 3 2 1 5 5 C 1.50699 * 109.47102 * 184.33998 * 3 2 1 6 6 H 1.08000 * 119.99800 * 239.99861 * 5 3 2 7 7 C 1.37881 * 119.99823 * 59.99745 * 5 3 2 8 8 N 1.31511 * 120.00159 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99731 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47134 * 119.99953 * 9 7 5 12 12 H 1.48498 * 109.47177 * 240.00524 * 9 7 5 13 13 N 1.46897 * 109.46992 * 64.33565 * 3 2 1 14 14 C 1.46896 * 111.00220 * 205.76610 * 13 3 2 15 15 C 1.50696 * 109.47272 * 174.95317 * 14 13 3 16 16 N 1.30833 * 125.96093 * 90.02872 * 15 14 13 17 17 C 1.33239 * 109.83153 * 180.02562 * 16 15 14 18 18 N 1.30714 * 108.94430 * 359.97438 * 17 16 15 19 19 N 1.34424 * 125.96250 * 269.71573 * 15 14 13 20 20 C 1.46502 * 126.82580 * 0.02562 * 19 15 14 21 21 C 1.52996 * 109.47420 * 119.99446 * 20 19 15 22 22 C 1.52998 * 109.46911 * 239.99933 * 20 19 15 23 23 H 1.08998 * 109.47050 * 54.03631 * 1 2 3 24 24 H 1.08996 * 109.46803 * 174.03998 * 1 2 3 25 25 H 1.09003 * 109.46567 * 294.03727 * 1 2 3 26 26 H 1.09002 * 109.46754 * 240.00331 * 2 1 3 27 27 H 1.08998 * 109.47458 * 120.00016 * 2 1 3 28 28 H 0.97006 * 119.99914 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99373 * 81.81669 * 13 3 2 30 30 H 1.09000 * 109.47065 * 294.95834 * 14 13 3 31 31 H 1.09002 * 109.46996 * 54.95359 * 14 13 3 32 32 H 1.07999 * 125.52401 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.46846 * 359.97438 * 20 19 15 34 34 H 1.08996 * 109.47197 * 60.00078 * 21 20 19 35 35 H 1.08996 * 109.47387 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47144 * 300.00301 * 21 20 19 37 37 H 1.09004 * 109.47114 * 179.97438 * 22 20 19 38 38 H 1.09006 * 109.46853 * 299.99368 * 22 20 19 39 39 H 1.08991 * 109.47589 * 59.99254 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6146 1.9783 -0.8486 5 6 3.5432 1.4439 -0.1075 6 1 4.1400 1.8915 0.6734 7 6 4.1565 0.8737 -1.2029 8 7 3.4297 0.3291 -2.1541 9 14 6.0197 0.8760 -1.3365 10 1 6.6005 1.5456 -0.1451 11 1 6.5127 -0.5230 -1.4069 12 1 6.4271 1.6068 -2.5633 13 7 1.6378 2.1041 1.2483 14 6 1.5432 3.5587 1.0665 15 6 1.0105 4.1890 2.3274 16 7 1.7278 4.6205 3.3330 17 6 0.9297 5.1168 4.2774 18 7 -0.3120 5.0081 3.8839 19 7 -0.2841 4.4114 2.6128 20 6 -1.4372 4.0910 1.7678 21 6 -2.3577 3.1189 2.5082 22 6 -2.2048 5.3744 1.4445 23 1 -0.3633 0.6035 -0.8318 24 1 -0.3633 -1.0221 -0.1067 25 1 -0.3632 0.4186 0.9386 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8612 -0.0717 -2.9249 29 1 2.2707 1.8740 1.9997 30 1 2.5318 3.9626 0.8479 31 1 0.8697 3.7783 0.2380 32 1 1.2560 5.5410 5.2155 33 1 -1.0922 3.6312 0.8416 34 1 -2.7026 3.5789 3.4342 35 1 -3.2154 2.8801 1.8793 36 1 -1.8108 2.2046 2.7385 37 1 -3.0624 5.1361 0.8154 38 1 -2.5497 5.8345 2.3705 39 1 -1.5490 6.0670 0.9171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:32 Heat of formation + Delta-G solvation = 57.166492 kcal Electronic energy + Delta-G solvation = -19143.774584 eV Core-core repulsion = 16315.098862 eV Total energy + Delta-G solvation = -2828.675722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.04636 -38.11758 -36.97309 -34.78169 -33.32158 -31.94466 -31.52696 -28.69422 -28.19877 -26.41486 -24.44042 -24.22782 -21.95135 -21.46037 -20.83541 -18.81783 -17.98960 -16.99847 -16.59522 -15.94294 -15.65084 -15.45920 -15.32425 -15.09341 -14.51817 -14.13027 -13.88716 -13.60076 -13.48930 -13.14134 -13.09307 -13.02695 -12.83817 -12.71592 -12.47949 -12.41621 -12.08878 -11.92042 -11.50825 -11.46458 -11.03096 -10.92520 -10.66770 -10.47278 -10.44915 -9.20183 -8.06359 -6.25898 0.64731 1.38533 1.39846 1.43131 1.52446 1.99704 2.42295 3.13030 3.18414 3.48921 3.81669 3.86420 3.97019 4.05167 4.13998 4.52914 4.62022 4.66415 4.68518 4.76812 4.79917 4.81877 4.90724 4.95474 5.15843 5.18903 5.23273 5.41714 5.45397 5.52217 5.58286 5.63516 5.76627 5.90310 6.09334 6.14993 6.31707 6.65834 6.95373 7.19867 7.45262 8.91401 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.006009 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.569191 B = 4658.434398 C = 5351.596928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.226 3.774 4 H 0.016 0.984 5 C -0.561 4.561 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.669 5.669 14 C 0.146 3.854 15 C 0.286 3.714 16 N -0.575 5.575 17 C 0.187 3.813 18 N -0.337 5.337 19 N -0.357 5.357 20 C 0.141 3.859 21 C -0.148 4.148 22 C -0.151 4.151 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 6.821 6.128 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.034 0.966 5 C -0.600 4.600 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.299 5.299 14 C 0.014 3.986 15 C 0.009 3.991 16 N -0.304 5.304 17 C -0.115 4.115 18 N -0.166 5.166 19 N -0.148 5.148 20 C 0.039 3.961 21 C -0.206 4.206 22 C -0.209 4.209 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.261 0.739 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.901 6.839 6.225 15.072 hybrid contribution 2.314 0.029 -0.371 2.344 sum -9.587 6.869 5.853 13.166 Atomic orbital electron populations 1.21542 0.96048 0.99665 1.00756 1.21362 0.94664 0.98032 1.00050 1.18976 0.91587 0.91624 0.86019 0.96639 1.22180 0.94111 1.37976 1.05743 0.93424 1.25542 1.01661 0.94735 0.95490 1.69977 1.36188 1.38549 1.09856 0.85714 0.81657 0.77675 0.77808 1.19918 1.20676 1.20649 1.60884 1.55265 1.04638 1.09084 1.20177 0.99827 0.89667 0.88909 1.24361 0.82139 0.95558 0.97004 1.70479 1.35632 1.21325 1.02972 1.26530 0.86180 0.98376 1.00460 1.77828 1.22571 1.20942 0.95212 1.50692 1.06890 1.43874 1.13328 1.21767 0.83875 0.98019 0.92395 1.22017 0.99471 0.97824 1.01256 1.22089 1.00839 0.95179 1.02765 0.94179 0.93982 0.92655 0.91785 0.95767 0.92808 0.85197 0.93119 0.88715 0.73933 0.87147 0.92085 0.87965 0.93332 0.87758 0.91949 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 9.72 71.98 0.70 -3.79 16 2 C -0.10 -4.63 5.45 30.60 0.17 -4.46 16 3 C 0.23 10.50 1.98 44.17 0.09 10.59 16 4 H 0.02 0.79 7.71 -2.38 -0.02 0.77 16 5 C -0.56 -29.33 8.46 25.60 0.22 -29.11 16 6 H 0.05 2.53 7.73 -2.91 -0.02 2.51 16 7 C 0.03 1.39 5.29 84.66 0.45 1.84 16 8 N -0.91 -49.63 11.30 21.45 0.24 -49.39 16 9 Si 0.94 42.69 29.54 68.60 2.03 44.71 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.67 -26.47 5.74 -499.47 -2.87 -29.34 16 14 C 0.15 5.26 5.67 85.56 0.49 5.74 16 15 C 0.29 9.77 7.54 138.23 1.04 10.82 16 16 N -0.57 -20.24 11.19 -191.79 -2.15 -22.39 16 17 C 0.19 5.48 13.03 180.77 2.36 7.84 16 18 N -0.34 -10.21 12.60 -61.25 -0.77 -10.98 16 19 N -0.36 -10.66 3.28 -318.05 -1.04 -11.71 16 20 C 0.14 3.28 3.68 44.99 0.17 3.44 16 21 C -0.15 -3.08 9.47 71.98 0.68 -2.40 16 22 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 26 H 0.06 3.29 5.97 -2.39 -0.01 3.28 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 29 H 0.33 13.99 8.45 -89.69 -0.76 13.23 16 30 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 31 H 0.09 3.11 6.91 -2.39 -0.02 3.09 16 32 H 0.24 4.93 8.06 -2.91 -0.02 4.90 16 33 H 0.11 2.59 6.73 -2.38 -0.02 2.58 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -60.03 323.89 2.74 -57.29 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.27 Total: 23.40 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 7.03 Total: -1.60 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -6.59 Total: -123.80 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.03 2.74 -57.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.457 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds