Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46929 * 2 1 4 4 C 1.46899 * 111.00248 * 292.27677 * 3 2 1 5 5 C 1.50705 * 109.46925 * 298.28136 * 4 3 2 6 6 C 1.35344 * 126.75150 * 95.79777 * 5 4 3 7 7 N 1.35315 * 106.17168 * 179.85483 * 6 5 4 8 8 C 1.46507 * 125.86306 * 180.11907 * 7 6 5 9 9 N 1.28713 * 108.26573 * 0.41306 * 7 6 5 10 10 N 1.28634 * 110.17486 * 359.73904 * 9 7 6 11 11 C 1.46909 * 110.99960 * 56.22921 * 3 2 1 12 12 H 1.08998 * 109.46982 * 299.37174 * 11 3 2 13 13 C 1.53001 * 109.46968 * 179.36881 * 11 3 2 14 14 C 1.52999 * 109.46842 * 59.36854 * 11 3 2 15 15 C 1.50697 * 109.46870 * 183.57565 * 14 11 3 16 16 H 1.07997 * 120.00429 * 355.16862 * 15 14 11 17 17 C 1.37881 * 120.00207 * 175.17161 * 15 14 11 18 18 N 1.31514 * 119.99988 * 359.72376 * 17 15 14 19 19 Si 1.86802 * 120.00282 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47231 * 179.72417 * 19 17 15 21 21 H 1.48501 * 109.46834 * 299.72542 * 19 17 15 22 22 H 1.48498 * 109.47115 * 59.72165 * 19 17 15 23 23 H 1.08994 * 109.47735 * 303.88100 * 1 2 3 24 24 H 1.09001 * 109.47111 * 63.88473 * 1 2 3 25 25 H 1.09001 * 109.47146 * 183.87749 * 1 2 3 26 26 H 1.08995 * 109.47015 * 240.00074 * 2 1 3 27 27 H 1.08998 * 109.47068 * 119.99567 * 2 1 3 28 28 H 1.08999 * 109.47028 * 58.27627 * 4 3 2 29 29 H 1.08998 * 109.47085 * 178.27743 * 4 3 2 30 30 H 1.08003 * 126.91331 * 359.97438 * 6 5 4 31 31 H 1.09004 * 109.46776 * 270.31755 * 8 7 6 32 32 H 1.08992 * 109.47546 * 30.31774 * 8 7 6 33 33 H 1.09003 * 109.46537 * 150.32495 * 8 7 6 34 34 H 1.08998 * 109.46917 * 299.99496 * 13 11 3 35 35 H 1.08995 * 109.47178 * 60.00172 * 13 11 3 36 36 H 1.08994 * 109.46797 * 180.02562 * 13 11 3 37 37 H 1.08999 * 109.47109 * 63.57588 * 14 11 3 38 38 H 1.08998 * 109.47568 * 303.57054 * 14 11 3 39 39 H 0.97006 * 119.99406 * 0.27483 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7050 2.0547 -1.2690 5 6 2.3933 1.3357 -2.4006 6 6 1.8573 0.3852 -3.2013 7 7 2.8323 0.0306 -4.0700 8 6 2.7123 -0.9706 -5.1329 9 7 3.8850 0.7194 -3.7981 10 7 3.6560 1.5073 -2.8074 11 6 1.4763 2.1355 1.1401 12 1 0.3886 2.1590 1.0744 13 6 2.0199 3.5654 1.1150 14 6 1.8938 1.4539 2.4447 15 6 1.2644 2.1723 3.6104 16 1 0.6943 3.0744 3.4448 17 6 1.4164 1.6778 4.8885 18 7 2.1061 0.5763 5.0897 19 14 0.6368 2.5686 6.3336 20 1 0.9402 1.8357 7.5890 21 1 1.1847 3.9462 6.4198 22 1 -0.8343 2.6322 6.1406 23 1 -0.3634 0.5728 0.8531 24 1 -0.3633 0.4524 -0.9228 25 1 -0.3633 -1.0253 0.0695 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.6272 2.0388 -1.4308 29 1 2.0514 3.0874 -1.2305 30 1 0.8529 -0.0093 -3.1570 31 1 2.9924 -1.9493 -4.7434 32 1 1.6823 -1.0020 -5.4879 33 1 3.3732 -0.7052 -5.9581 34 1 3.1076 3.5418 1.1808 35 1 1.7225 4.0509 0.1856 36 1 1.6171 4.1221 1.9611 37 1 2.9790 1.4868 2.5407 38 1 1.5611 0.4160 2.4352 39 1 2.5112 0.1139 4.3393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570847535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 74.564600 kcal Electronic energy + Delta-G solvation = -19047.219793 eV Core-core repulsion = 16219.298510 eV Total energy + Delta-G solvation = -2827.921284 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.21685 -39.85764 -35.94720 -35.37325 -33.40256 -32.59220 -30.52687 -28.74661 -28.24612 -27.03849 -25.04568 -23.89826 -22.96828 -22.05183 -20.16746 -18.85612 -18.06694 -17.62992 -16.97190 -16.46506 -15.90615 -15.66154 -15.49248 -15.24340 -14.57595 -14.07630 -13.90616 -13.81908 -13.57440 -13.46099 -13.23518 -13.13524 -12.63454 -12.58598 -12.55129 -12.38685 -12.02989 -11.93282 -11.75330 -11.44301 -11.23269 -10.94611 -10.64817 -10.47153 -10.17305 -9.07511 -8.61990 -6.30808 0.64000 1.46201 1.54659 1.60508 1.63535 1.81887 2.60343 3.14665 3.23047 3.37957 3.78390 4.00181 4.08400 4.12746 4.25068 4.27701 4.34327 4.40094 4.47512 4.55423 4.60616 4.63341 4.70026 4.87148 4.98877 4.99003 5.09030 5.15492 5.20714 5.23015 5.36463 5.40510 5.58936 5.70605 5.98218 6.25302 6.29177 6.32511 6.65478 7.50923 7.53991 8.78301 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.004560 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.629029 B = 6138.312571 C = 6323.640558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 N -0.545 5.545 4 C 0.136 3.864 5 C -0.024 4.024 6 C -0.031 4.031 7 N -0.287 5.287 8 C 0.069 3.931 9 N -0.124 5.124 10 N -0.300 5.300 11 C 0.104 3.896 12 H 0.042 0.958 13 C -0.128 4.128 14 C 0.028 3.972 15 C -0.604 4.604 16 H 0.057 0.943 17 C -0.041 4.041 18 N -0.942 5.942 19 Si 1.116 2.884 20 H -0.288 1.288 21 H -0.270 1.270 22 H -0.266 1.266 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.055 0.945 37 H -0.026 1.026 38 H -0.006 1.006 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 -2.765 -21.317 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.073 4.073 3 N -0.270 5.270 4 C 0.007 3.993 5 C -0.163 4.163 6 C -0.183 4.183 7 N -0.081 5.081 8 C -0.069 4.069 9 N -0.103 5.103 10 N -0.166 5.166 11 C -0.003 4.003 12 H 0.059 0.941 13 C -0.186 4.186 14 C -0.009 4.009 15 C -0.642 4.642 16 H 0.075 0.925 17 C -0.238 4.238 18 N -0.580 5.580 19 Si 0.938 3.062 20 H -0.213 1.213 21 H -0.195 1.195 22 H -0.191 1.191 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.245 0.755 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.074 0.926 37 H -0.008 1.008 38 H 0.012 0.988 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.675 -2.565 -20.092 20.787 hybrid contribution -1.126 -0.548 -1.213 1.743 sum -5.801 -3.113 -21.304 22.298 Atomic orbital electron populations 1.22310 0.96580 1.02859 1.02211 1.22033 0.94247 0.89946 1.01101 1.62145 1.60370 1.02594 1.01898 1.20328 0.97303 0.97245 0.84421 1.22000 0.91932 1.01423 1.00981 1.23901 0.98883 1.01200 0.94345 1.47670 1.07847 1.28077 1.24498 1.22750 1.07658 0.89051 0.87485 1.78216 1.11801 1.06363 1.13957 1.75018 1.16492 1.18203 1.06894 1.21411 0.96041 0.93653 0.89241 0.94052 1.21750 1.00328 0.95206 1.01296 1.19115 0.93881 0.94884 0.93023 1.22423 1.35495 1.12345 0.93969 0.92523 1.27380 0.96015 0.96491 1.03906 1.70912 1.34111 1.18346 1.34605 0.82954 0.76209 0.74833 0.72254 1.21320 1.19538 1.19132 0.94049 0.90224 0.91130 0.90374 0.93915 0.90783 0.89600 0.75498 0.87777 0.84872 0.87383 0.94348 0.91184 0.92603 1.00753 0.98774 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.02 9.23 71.98 0.66 -4.35 16 2 C 0.05 1.83 5.40 86.30 0.47 2.30 16 3 N -0.55 -20.07 4.61 -875.50 -4.03 -24.10 16 4 C 0.14 3.99 5.03 85.56 0.43 4.42 16 5 C -0.02 -0.67 5.81 41.60 0.24 -0.43 16 6 C -0.03 -0.60 10.34 83.49 0.86 0.26 16 7 N -0.29 -5.67 3.74 -369.22 -1.38 -7.05 16 8 C 0.07 0.48 11.39 127.77 1.46 1.93 16 9 N -0.12 -3.70 13.17 37.02 0.49 -3.21 16 10 N -0.30 -10.44 12.41 -48.60 -0.60 -11.05 16 11 C 0.10 4.36 1.61 44.91 0.07 4.43 16 12 H 0.04 1.70 6.19 -2.39 -0.01 1.69 16 13 C -0.13 -5.04 8.66 71.98 0.62 -4.42 16 14 C 0.03 1.52 3.67 29.85 0.11 1.63 16 15 C -0.60 -34.50 8.48 25.60 0.22 -34.29 16 16 H 0.06 3.10 6.79 -2.91 -0.02 3.08 16 17 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16 18 N -0.94 -60.05 13.65 21.45 0.29 -59.75 16 19 Si 1.12 50.88 29.90 68.60 2.05 52.93 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H 0.04 1.41 6.14 -2.39 -0.01 1.39 16 24 H 0.08 1.66 6.75 -2.39 -0.02 1.65 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.29 6.02 -2.39 -0.01 2.28 16 27 H 0.04 1.74 6.42 -2.39 -0.02 1.72 16 28 H 0.07 1.76 6.54 -2.39 -0.02 1.74 16 29 H 0.09 2.64 5.93 -2.39 -0.01 2.62 16 30 H 0.23 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.24 6.23 -2.39 -0.01 2.22 16 36 H 0.05 2.29 6.76 -2.39 -0.02 2.27 16 37 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 38 H -0.01 -0.34 5.96 -2.39 -0.01 -0.35 16 39 H 0.25 16.48 7.19 -92.70 -0.67 15.82 16 Total: -1.00 -78.78 307.69 3.57 -75.22 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.14 Total: 7.50 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 5.61 Total: -30.48 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -5.24 Total: -105.16 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -78.78 3.57 -75.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570847535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.780 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds