Wall clock time and date at job start Mon Mar 30 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00270 * 2 1 4 4 H 1.48501 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46901 * 299.99669 * 3 2 1 6 6 H 1.48495 * 109.47430 * 60.00105 * 3 2 1 7 7 C 1.37880 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.81100 * 61.88206 * 9 7 2 11 11 C 1.54893 * 110.75465 * 298.55182 * 9 7 2 12 12 C 1.54271 * 104.19087 * 203.73955 * 11 9 7 13 13 C 1.53868 * 106.60076 * 23.60980 * 12 11 9 14 14 H 1.09001 * 110.03064 * 240.66977 * 13 12 11 15 15 N 1.46901 * 110.03681 * 119.28400 * 13 12 11 16 16 C 1.46901 * 111.00166 * 86.44999 * 15 13 12 17 17 H 1.09001 * 109.46874 * 325.00436 * 16 15 13 18 18 C 1.53000 * 109.46769 * 85.00156 * 16 15 13 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 16 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 22 22 H 1.09002 * 109.47045 * 180.02562 * 21 20 19 23 23 N 1.46896 * 109.47234 * 59.99900 * 21 20 19 24 24 C 1.52996 * 109.47195 * 205.00237 * 16 15 13 25 25 C 1.54268 * 106.60043 * 359.97438 * 13 12 11 26 26 H 0.96999 * 120.00242 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.48648 * 85.06218 * 11 9 7 28 28 H 1.09000 * 110.59888 * 322.46715 * 11 9 7 29 29 H 1.08998 * 110.03110 * 264.32142 * 12 11 9 30 30 H 1.09005 * 110.07162 * 142.91666 * 12 11 9 31 31 H 1.00903 * 111.00092 * 210.40715 * 15 13 12 32 32 H 1.09002 * 109.47398 * 300.00295 * 18 16 15 33 33 H 1.09001 * 109.47194 * 60.00475 * 18 16 15 34 34 H 1.08998 * 109.47533 * 59.99948 * 19 18 16 35 35 H 1.08996 * 109.47853 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.47002 * 299.99574 * 20 19 18 37 37 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 38 38 H 1.00911 * 110.99768 * 60.00310 * 23 21 20 39 39 H 1.00900 * 111.00125 * 183.94765 * 23 21 20 40 40 H 1.08992 * 109.47554 * 299.99900 * 24 16 15 41 41 H 1.09004 * 109.47108 * 60.00150 * 24 16 15 42 42 H 1.08992 * 110.48975 * 95.07074 * 25 13 12 43 43 H 1.09006 * 110.48619 * 217.71246 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6411 -2.5951 -0.8966 11 6 0.3775 -2.6276 1.2744 12 6 0.1829 -4.1481 1.4478 13 6 1.3579 -4.8272 0.7227 14 1 0.9839 -5.4665 -0.0770 15 7 2.1454 -5.6217 1.6748 16 6 1.5871 -6.9725 1.8217 17 1 0.5007 -6.9267 1.7469 18 6 2.1371 -7.8746 0.7151 19 6 1.5552 -9.2814 0.8676 20 6 1.9483 -9.8507 2.2324 21 6 1.3983 -8.9485 3.3389 22 1 1.6788 -9.3539 4.3111 23 7 -0.0658 -8.8863 3.2376 24 6 1.9808 -7.5414 3.1863 25 6 2.2253 -3.6957 0.1334 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5834 -2.1342 1.1289 28 1 0.8939 -2.2082 2.1379 29 1 -0.7614 -4.4572 0.9995 30 1 0.1964 -4.4088 2.5061 31 1 3.1153 -5.6592 1.3992 32 1 1.8566 -7.4693 -0.2571 33 1 3.2235 -7.9204 0.7900 34 1 0.4688 -9.2354 0.7926 35 1 1.9472 -9.9243 0.0796 36 1 3.0347 -9.8968 2.3075 37 1 1.5333 -10.8527 2.3412 38 1 -0.4743 -9.8039 3.3353 39 1 -0.4484 -8.2461 3.9171 40 1 3.0672 -7.5872 3.2612 41 1 1.5891 -6.8987 3.9747 42 1 3.0423 -3.4488 0.8112 43 1 2.6129 -3.9820 -0.8444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578643291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:50 Heat of formation + Delta-G solvation = -49.849811 kcal Electronic energy + Delta-G solvation = -19346.930716 eV Core-core repulsion = 16617.154762 eV Total energy + Delta-G solvation = -2729.775954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33210 -38.78413 -35.69502 -34.15412 -33.02615 -30.44177 -29.85739 -29.06752 -27.38805 -25.47135 -23.15039 -22.59974 -21.17571 -20.47316 -19.92297 -18.36754 -16.96452 -16.82246 -16.58583 -16.44993 -15.68730 -15.46012 -15.20014 -14.66596 -14.32261 -13.99792 -13.79160 -13.61345 -13.19263 -13.11785 -12.94110 -12.74552 -12.70606 -12.31936 -12.06843 -11.92362 -11.77437 -11.60383 -11.52624 -11.30911 -11.22308 -11.10022 -10.87485 -10.76319 -10.43849 -9.42691 -9.12301 -8.08954 -6.19098 1.40924 1.42305 1.54103 2.45184 3.21253 3.28931 3.67987 3.89869 3.99873 4.03170 4.11762 4.20291 4.36186 4.37562 4.48200 4.57117 4.70374 4.75981 4.77448 4.80980 4.85889 5.02016 5.04741 5.14383 5.17635 5.20914 5.24235 5.28512 5.32930 5.35245 5.44228 5.50134 5.53269 5.62618 5.69292 5.94564 6.03610 6.36354 6.39396 6.42220 6.65567 6.72314 6.91391 7.48118 8.99780 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048201 B = 0.004178 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.761919 B = 6699.907702 C = 6857.846483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.040 3.960 10 H -0.003 1.003 11 C -0.087 4.087 12 C -0.104 4.104 13 C 0.101 3.899 14 H 0.037 0.963 15 N -0.683 5.683 16 C 0.099 3.901 17 H 0.071 0.929 18 C -0.142 4.142 19 C -0.102 4.102 20 C -0.108 4.108 21 C 0.095 3.905 22 H 0.043 0.957 23 N -0.850 5.850 24 C -0.095 4.095 25 C -0.108 4.108 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.339 0.661 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.346 0.654 39 H 0.343 0.657 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -20.313 6.055 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.015 0.985 11 C -0.125 4.125 12 C -0.142 4.142 13 C -0.009 4.009 14 H 0.055 0.945 15 N -0.314 5.314 16 C -0.011 4.011 17 H 0.090 0.910 18 C -0.181 4.181 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.017 4.017 22 H 0.061 0.939 23 N -0.382 5.382 24 C -0.134 4.134 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.731 -19.670 5.876 20.709 hybrid contribution 0.360 0.583 -0.046 0.687 sum 3.091 -19.087 5.829 20.195 Atomic orbital electron populations 1.70107 1.07272 1.27006 1.51583 1.25776 0.95670 1.02450 0.94874 0.85566 0.79143 0.79763 0.77550 1.19053 1.20614 1.20684 1.21544 0.92931 0.92084 1.50335 0.92936 1.19513 0.92915 0.92389 0.93056 0.98519 1.22005 0.99007 0.93491 0.98022 1.22149 0.96595 0.95378 1.00083 1.21932 0.93886 0.93228 0.91824 0.94526 1.60742 1.05948 1.13958 1.50712 1.21454 0.99212 0.85909 0.94480 0.91036 1.22185 1.00423 0.97032 0.98469 1.21290 1.01145 0.94653 0.96977 1.21554 1.00609 0.98302 0.94135 1.21295 0.88399 0.94948 0.97028 0.93935 1.58682 1.04839 1.15232 1.59435 1.21493 1.00398 0.95085 0.96423 1.22471 0.98207 0.95131 0.98750 0.93188 0.94642 0.95444 0.93363 0.91735 0.84233 0.93811 0.91864 0.91810 0.92175 0.91256 0.91155 0.84015 0.84362 0.91512 0.92701 0.92148 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 12.02 21.45 0.26 -54.97 16 2 C 0.01 0.62 5.33 84.66 0.45 1.07 16 3 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.53 -30.38 8.54 25.60 0.22 -30.16 16 8 H 0.05 2.95 7.78 -2.91 -0.02 2.92 16 9 C 0.04 2.10 2.82 -10.26 -0.03 2.07 16 10 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 11 C -0.09 -4.35 5.57 31.67 0.18 -4.18 16 12 C -0.10 -4.18 6.39 31.32 0.20 -3.98 16 13 C 0.10 3.68 3.03 45.64 0.14 3.82 16 14 H 0.04 1.32 7.16 -2.39 -0.02 1.30 16 15 N -0.68 -20.74 5.90 -465.77 -2.75 -23.49 16 16 C 0.10 2.50 2.15 44.91 0.10 2.60 16 17 H 0.07 2.09 7.18 -2.39 -0.02 2.07 16 18 C -0.14 -3.18 5.16 30.59 0.16 -3.02 16 19 C -0.10 -1.91 5.77 30.60 0.18 -1.74 16 20 C -0.11 -1.66 5.61 30.60 0.17 -1.48 16 21 C 0.10 1.57 3.57 44.93 0.16 1.73 16 22 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 23 N -0.85 -13.72 7.72 -168.62 -1.30 -15.02 16 24 C -0.10 -2.02 5.18 30.61 0.16 -1.86 16 25 C -0.11 -4.55 5.67 31.66 0.18 -4.37 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.03 1.93 7.37 -2.39 -0.02 1.92 16 28 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.48 7.92 -2.38 -0.02 2.46 16 31 H 0.34 9.66 8.10 -89.69 -0.73 8.94 16 32 H 0.04 1.10 7.45 -2.39 -0.02 1.09 16 33 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.06 1.34 7.60 -2.39 -0.02 1.33 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.35 4.30 9.04 -89.69 -0.81 3.49 16 39 H 0.34 5.44 8.99 -89.69 -0.81 4.63 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.06 2.58 7.88 -2.39 -0.02 2.56 16 43 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -61.96 325.52 -0.86 -62.82 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -1.35 Total: 23.26 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 2.26 Total: -39.50 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.79 Total: -93.48 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.96 -0.86 -62.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578643291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.972 kcal (2) G-P(sol) polarization free energy of solvation -61.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds