Wall clock time and date at job start Mon Mar 30 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99637 * 2 1 4 4 H 1.48500 * 109.47490 * 240.00449 * 3 2 1 5 5 H 1.48501 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46917 * 120.00444 * 3 2 1 7 7 C 1.37874 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.43737 * 57.46629 * 9 7 2 11 11 C 1.54260 * 110.48815 * 294.77251 * 9 7 2 12 12 C 1.53868 * 106.60238 * 217.71168 * 11 9 7 13 13 C 1.54267 * 106.59860 * 0.02562 * 12 11 9 14 14 H 1.09000 * 110.59594 * 264.87155 * 13 12 11 15 15 N 1.46906 * 110.48657 * 142.28595 * 13 12 11 16 16 C 1.46901 * 110.99932 * 90.22350 * 15 13 12 17 17 H 1.09001 * 109.46874 * 35.00030 * 16 15 13 18 18 C 1.52996 * 109.47195 * 274.99831 * 16 15 13 19 19 C 1.53002 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 18 16 21 21 C 1.53006 * 109.47164 * 299.99874 * 20 19 18 22 22 H 1.08996 * 109.46884 * 180.02562 * 21 20 19 23 23 N 1.46902 * 109.46626 * 300.00172 * 21 20 19 24 24 C 1.52997 * 109.47127 * 59.99836 * 21 20 19 25 25 C 1.54892 * 110.48228 * 180.02562 * 9 7 2 26 26 H 0.96995 * 120.00290 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.03660 * 337.00442 * 11 9 7 28 28 H 1.09010 * 110.03240 * 98.38270 * 11 9 7 29 29 H 1.09003 * 110.03608 * 240.71691 * 12 11 9 30 30 H 1.09005 * 110.03328 * 119.28394 * 12 11 9 31 31 H 1.00895 * 110.99813 * 214.17758 * 15 13 12 32 32 H 1.08992 * 109.47554 * 299.99900 * 18 16 15 33 33 H 1.09004 * 109.47108 * 60.00150 * 18 16 15 34 34 H 1.09002 * 109.47097 * 180.02562 * 19 18 16 35 35 H 1.09001 * 109.47142 * 300.00176 * 19 18 16 36 36 H 1.09001 * 109.47375 * 59.99908 * 20 19 18 37 37 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 38 38 H 1.00903 * 110.99827 * 299.99336 * 23 21 20 39 39 H 1.00897 * 111.00619 * 63.95323 * 23 21 20 40 40 H 1.09002 * 109.47153 * 180.02562 * 24 21 20 41 41 H 1.09001 * 109.46832 * 60.00321 * 24 21 20 42 42 H 1.08995 * 110.75817 * 38.31111 * 25 9 7 43 43 H 1.08995 * 110.75713 * 274.93265 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5848 -2.5539 -0.8614 11 6 0.4573 -2.6643 1.3118 12 6 0.5421 -4.1526 1.6926 13 6 1.3851 -4.8400 0.5987 14 1 0.7407 -5.2757 -0.1649 15 7 2.2507 -5.8703 1.1881 16 6 1.5731 -7.1733 1.2178 17 1 0.9409 -7.2742 0.3356 18 6 0.7103 -7.2709 2.4775 19 6 0.0041 -8.6278 2.5081 20 6 1.0483 -9.7461 2.5172 21 6 1.9112 -9.6485 1.2575 22 1 2.6547 -10.4454 1.2639 23 7 1.0590 -9.7839 0.0686 24 6 2.6173 -8.2916 1.2269 25 6 2.2367 -3.6940 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 0.9016 -2.0521 2.0966 28 1 -0.5828 -2.3762 1.1579 29 1 -0.4569 -4.5878 1.7232 30 1 1.0278 -4.2629 2.6622 31 1 3.1287 -5.9304 0.6946 32 1 1.3425 -7.1700 3.3596 33 1 -0.0339 -6.4744 2.4708 34 1 -0.6109 -8.6972 3.4053 35 1 -0.6282 -8.7283 1.6259 36 1 1.6806 -9.6456 3.3994 37 1 0.5452 -10.7128 2.5395 38 1 0.5813 -10.6727 0.0655 39 1 0.4025 -9.0203 0.0053 40 1 3.2317 -8.2218 0.3292 41 1 3.2496 -8.1911 2.1091 42 1 3.0994 -3.4831 0.6313 43 1 2.5501 -3.9362 -1.0160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578643292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:54 Heat of formation + Delta-G solvation = -31.493270 kcal Electronic energy + Delta-G solvation = -19376.520057 eV Core-core repulsion = 16647.540102 eV Total energy + Delta-G solvation = -2728.979955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55752 -37.36298 -34.29209 -32.43098 -31.93080 -29.34783 -28.41683 -27.94501 -25.80761 -23.64425 -22.49312 -21.52603 -19.67226 -18.94049 -18.74841 -16.60470 -16.12136 -15.33485 -15.03114 -14.89872 -14.56840 -14.46315 -14.34997 -13.83222 -12.87181 -12.67589 -12.31579 -12.29273 -12.03668 -11.90672 -11.62691 -11.36724 -11.08416 -10.89654 -10.75291 -10.62022 -10.42477 -10.24520 -10.20039 -9.95068 -9.69830 -9.45804 -9.03380 -8.84611 -8.65970 -8.31208 -8.02418 -5.94713 -3.96904 3.35993 3.40388 3.43169 4.32114 4.39537 4.49741 4.61418 4.73466 4.93654 5.11991 5.18237 5.35205 5.37217 5.38739 5.49091 5.60134 5.63869 5.74504 5.77788 5.88715 5.94391 6.05207 6.05723 6.16908 6.27547 6.33020 6.50089 6.61400 6.71579 6.86155 6.93005 6.98940 7.06367 7.26016 7.26647 7.42576 7.63680 7.75595 7.82648 7.98352 8.09424 8.53698 9.05883 9.66596 11.15229 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050887 B = 0.004151 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.102950 B = 6744.100944 C = 6946.474880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.097 4.097 12 C -0.111 4.111 13 C 0.081 3.919 14 H 0.038 0.962 15 N -0.679 5.679 16 C 0.089 3.911 17 H 0.042 0.958 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.154 4.154 21 C 0.094 3.906 22 H 0.078 0.922 23 N -0.846 5.846 24 C -0.114 4.114 25 C -0.118 4.118 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.337 0.663 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.336 0.664 39 H 0.342 0.658 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -18.592 4.022 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.028 4.028 14 H 0.056 0.944 15 N -0.310 5.310 16 C -0.021 4.021 17 H 0.060 0.940 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.194 4.194 21 C -0.018 4.018 22 H 0.096 0.904 23 N -0.377 5.377 24 C -0.153 4.153 25 C -0.156 4.156 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.328 -18.231 4.241 18.765 hybrid contribution -0.424 0.636 -0.169 0.783 sum 0.903 -17.596 4.072 18.083 Atomic orbital electron populations 1.69962 1.05874 1.26434 1.50689 1.24976 0.94813 0.98946 0.95232 0.86724 0.79637 0.83432 0.78567 1.20362 1.21408 1.20310 1.21133 0.92736 0.90586 1.50587 0.92777 1.19368 0.92354 0.91370 0.93663 0.95400 1.22080 1.00540 0.91282 0.99702 1.22300 0.96873 0.97622 0.98169 1.22550 0.94202 0.91380 0.94670 0.94362 1.60621 1.06680 1.04703 1.59011 1.21523 0.94862 0.88852 0.96891 0.94038 1.21630 0.98971 0.95951 0.98408 1.21556 0.97651 0.95237 1.01537 1.22354 0.98689 0.98338 0.99970 1.21386 0.94922 0.97815 0.87696 0.90377 1.59013 1.29509 1.07614 1.41532 1.21753 0.97888 0.93111 1.02516 1.22759 0.99178 0.95647 0.97975 0.93125 0.93121 0.93102 0.94368 0.92215 0.84432 0.91439 0.91296 0.91902 0.92629 0.91373 0.92445 0.85137 0.84264 0.91458 0.90857 0.91729 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 12.63 55.43 0.70 -25.34 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.27 8.36 -34.44 -0.29 -14.56 16 8 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.30 2.73 -90.11 -0.25 1.05 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.10 -2.32 5.60 -25.62 -0.14 -2.46 16 12 C -0.11 -2.16 5.16 -25.62 -0.13 -2.29 16 13 C 0.08 1.46 3.18 -66.07 -0.21 1.25 16 14 H 0.04 0.70 7.44 -51.93 -0.39 0.32 16 15 N -0.68 -10.28 6.14 -98.03 -0.60 -10.88 16 16 C 0.09 1.12 2.23 -67.71 -0.15 0.97 16 17 H 0.04 0.57 5.86 -51.93 -0.30 0.26 16 18 C -0.11 -1.36 5.25 -26.73 -0.14 -1.50 16 19 C -0.12 -1.18 5.66 -26.73 -0.15 -1.33 16 20 C -0.15 -1.33 5.61 -26.73 -0.15 -1.48 16 21 C 0.09 0.87 3.69 -67.71 -0.25 0.62 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 N -0.85 -7.92 9.12 -4.67 -0.04 -7.96 16 24 C -0.11 -1.24 4.91 -26.73 -0.13 -1.37 16 25 C -0.12 -2.45 5.65 -24.76 -0.14 -2.59 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 28 H 0.05 1.28 8.06 -51.92 -0.42 0.87 16 29 H 0.04 0.69 7.41 -51.93 -0.38 0.31 16 30 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 31 H 0.34 4.87 8.03 -39.29 -0.32 4.56 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 6.76 -51.93 -0.35 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.34 2.57 9.04 -39.29 -0.36 2.21 16 39 H 0.34 3.39 5.44 -39.29 -0.21 3.17 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -28.34 319.53 -10.01 -38.35 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.64 Total: 6.48 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.23 Total: -22.04 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.06 Total: -44.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.34 -10.01 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578643292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.860 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds