Wall clock time and date at job start Mon Mar 30 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 90.00043 * 9 7 5 11 11 H 1.48495 * 109.47415 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47390 * 330.00270 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.46835 * 325.00273 * 15 14 13 17 17 C 1.52997 * 109.46874 * 85.00270 * 15 14 13 18 18 C 1.53002 * 109.46992 * 205.00108 * 15 14 13 19 19 N 1.46498 * 109.46994 * 65.00442 * 18 15 14 20 20 C 1.34426 * 126.82465 * 124.71143 * 19 18 15 21 21 N 1.30831 * 108.08133 * 179.89136 * 20 19 18 22 22 C 1.33241 * 109.82651 * 0.37663 * 21 20 19 23 23 N 1.30719 * 108.94538 * 359.76478 * 22 21 20 24 24 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 25 25 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 28 28 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 29 29 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 32 32 H 1.00908 * 110.99847 * 56.04959 * 14 13 2 33 33 H 1.08997 * 109.47489 * 179.97438 * 17 15 14 34 34 H 1.09007 * 109.47004 * 300.00081 * 17 15 14 35 35 H 1.09007 * 109.47280 * 59.99720 * 17 15 14 36 36 H 1.08995 * 109.46658 * 185.00246 * 18 15 14 37 37 H 1.09003 * 109.46922 * 304.99986 * 18 15 14 38 38 H 1.08008 * 125.95665 * 0.03177 * 20 19 18 39 39 H 1.07998 * 125.52758 * 179.73156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.5650 1.5431 -5.5817 11 1 1.3130 -0.3703 -6.3891 12 1 0.2283 1.2846 -4.9874 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.0808 -1.7078 3.5332 17 6 3.5684 -0.2064 3.9498 18 6 1.2359 -0.2225 4.8450 19 7 -0.1214 -0.7297 4.6291 20 6 -0.8313 -1.5113 5.4611 21 7 -1.9944 -1.7420 4.9081 22 6 -2.0605 -1.1339 3.7244 23 7 -0.9373 -0.5009 3.5091 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1264 -0.7993 -1.2056 28 1 1.6055 -1.7198 -1.2951 29 1 2.9239 -1.8416 -4.7317 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 0.6528 0.1793 2.4753 33 1 3.9196 -0.6991 4.8565 34 1 4.2017 -0.4946 3.1107 35 1 3.6124 0.8745 4.0838 36 1 1.6390 -0.6439 5.7659 37 1 1.2095 0.8643 4.9238 38 1 -0.5002 -1.8821 6.4200 39 1 -2.9050 -1.1602 3.0517 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590593430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:17 Heat of formation + Delta-G solvation = 76.400660 kcal Electronic energy + Delta-G solvation = -18714.835490 eV Core-core repulsion = 15886.993824 eV Total energy + Delta-G solvation = -2827.841666 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20983 -37.78668 -35.35991 -33.17863 -32.07351 -31.37717 -29.79572 -26.98702 -26.70607 -25.16348 -22.73537 -22.16324 -21.82977 -20.62624 -18.88540 -17.47590 -16.46065 -16.29907 -15.43395 -15.25412 -14.76928 -14.46623 -14.17449 -13.66381 -13.17312 -12.99103 -12.91755 -12.48638 -12.30998 -11.98713 -11.67983 -11.51011 -11.41157 -11.08962 -10.83447 -10.65850 -10.28363 -10.18154 -10.05530 -9.94567 -9.79031 -9.64519 -9.07706 -8.90624 -8.28747 -8.08628 -5.93511 -3.94285 1.48586 2.13092 2.84296 3.35999 3.41990 3.45747 4.08250 4.15212 4.33996 4.52149 4.73401 4.80445 4.89771 5.13094 5.29319 5.39156 5.42302 5.64602 5.83055 5.86485 5.92201 6.06507 6.16060 6.22294 6.29366 6.37132 6.59282 6.61946 6.70225 7.03328 7.20518 7.25682 7.43326 7.74589 7.86113 7.91676 7.99109 8.07165 8.51691 9.12074 9.68810 11.18144 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028953 B = 0.004557 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.836735 B = 6143.026871 C = 6785.956554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 H 0.063 0.937 4 C 0.029 3.971 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.069 3.931 14 N -0.691 5.691 15 C 0.071 3.929 16 H 0.044 0.956 17 C -0.138 4.138 18 C 0.122 3.878 19 N -0.380 5.380 20 C 0.250 3.750 21 N -0.548 5.548 22 C 0.202 3.798 23 N -0.312 5.312 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.361 0.639 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.217 0.783 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 0.848 20.827 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.009 4.009 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.060 4.060 14 N -0.331 5.331 15 C -0.041 4.041 16 H 0.062 0.938 17 C -0.197 4.197 18 C 0.000 4.000 19 N -0.171 5.171 20 C -0.047 4.047 21 N -0.276 5.276 22 C -0.101 4.101 23 N -0.140 5.140 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.188 0.812 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.233 0.767 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.509 1.423 20.179 20.384 hybrid contribution -0.597 -0.437 -0.714 1.028 sum -3.106 0.986 19.465 19.736 Atomic orbital electron populations 1.21702 0.96450 1.00334 1.00339 1.21192 0.95106 0.99862 0.93975 0.91825 1.19106 0.95985 0.95348 0.90458 1.21248 1.34460 1.08210 0.90979 0.92555 1.25018 0.95383 0.95087 0.99070 1.69967 1.39251 1.21272 1.23308 0.86630 0.78936 0.79807 0.82852 1.20743 1.21348 1.19895 1.22101 0.99811 0.94243 0.89813 1.60875 1.22641 1.49202 1.00356 1.21772 0.94906 0.97101 0.90309 0.93779 1.21756 0.94374 1.02206 1.01344 1.22266 0.76284 1.01467 0.99953 1.50700 1.14387 1.37907 1.14094 1.26052 0.88237 0.92487 0.97933 1.70541 1.20009 1.27237 1.09792 1.26053 0.96521 0.93657 0.93862 1.77754 1.04288 1.25439 1.06502 0.94381 0.92170 0.94360 0.96800 0.96877 0.93155 0.91875 0.96394 0.81221 0.92753 0.91537 0.91602 0.87554 0.88302 0.76678 0.76632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.77 37.16 0.33 -2.34 16 2 C -0.08 -1.79 2.54 -90.62 -0.23 -2.02 16 3 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 4 C 0.03 0.76 4.45 -27.89 -0.12 0.63 16 5 C -0.51 -14.68 8.41 -34.44 -0.29 -14.97 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.29 4.94 -3.83 -0.02 1.27 16 14 N -0.69 -10.83 6.31 -106.72 -0.67 -11.50 16 15 C 0.07 0.83 2.87 -67.71 -0.19 0.63 16 16 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 17 C -0.14 -1.38 9.41 37.16 0.35 -1.03 16 18 C 0.12 1.06 6.11 -4.04 -0.02 1.03 16 19 N -0.38 -4.13 3.69 -62.63 -0.23 -4.36 16 20 C 0.25 2.35 12.63 -90.66 -1.14 1.20 16 21 N -0.55 -6.62 11.19 -15.83 -0.18 -6.80 16 22 C 0.20 2.50 13.03 -91.81 -1.20 1.30 16 23 N -0.31 -4.26 10.01 29.29 0.29 -3.97 16 24 H 0.04 0.69 6.68 -51.93 -0.35 0.35 16 25 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 26 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 1.18 7.44 -51.93 -0.39 0.80 16 31 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.36 5.82 3.72 -39.29 -0.15 5.67 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.78 7.45 -51.92 -0.39 0.39 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.22 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -33.89 318.62 -9.10 -42.99 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.18 Total: 1.30 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.64 Total: -12.77 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.05 Total: -53.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.89 -9.10 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.390 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds