Wall clock time and date at job start Mon Mar 30 2020 04:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46496 * 109.47484 * 175.00385 * 4 2 1 6 6 C 1.34425 * 126.82837 * 124.99728 * 5 4 2 7 7 N 1.30833 * 108.08066 * 179.97438 * 6 5 4 8 8 C 1.33239 * 109.82584 * 0.02562 * 7 6 5 9 9 N 1.30713 * 108.94917 * 359.75004 * 8 7 6 10 10 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 11 11 C 1.46903 * 110.99908 * 274.99684 * 10 2 1 12 12 C 1.52996 * 109.47400 * 179.97438 * 11 10 2 13 13 H 1.08998 * 109.47117 * 305.00378 * 12 11 10 14 14 C 1.53004 * 109.47186 * 64.99811 * 12 11 10 15 15 C 1.52997 * 109.47296 * 184.99658 * 12 11 10 16 16 C 1.50705 * 109.47105 * 174.99846 * 15 12 11 17 17 H 1.07994 * 119.99908 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99717 * 180.02562 * 16 15 12 19 19 N 1.31505 * 120.00603 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99717 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47164 * 60.00133 * 20 18 16 22 22 H 1.48500 * 109.47158 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47220 * 300.00225 * 20 18 16 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 28 28 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 29 29 H 1.08006 * 125.95744 * 0.02562 * 6 5 4 30 30 H 1.08003 * 125.52606 * 180.02562 * 8 7 6 31 31 H 1.00894 * 111.00396 * 38.94794 * 10 2 1 32 32 H 1.09003 * 109.46856 * 300.00136 * 11 10 2 33 33 H 1.09001 * 109.47072 * 60.00127 * 11 10 2 34 34 H 1.08996 * 109.47580 * 180.02562 * 14 12 11 35 35 H 1.08995 * 109.47081 * 300.00389 * 14 12 11 36 36 H 1.09001 * 109.47090 * 60.00064 * 14 12 11 37 37 H 1.08996 * 109.47913 * 295.00131 * 15 12 11 38 38 H 1.09002 * 109.46899 * 55.00689 * 15 12 11 39 39 H 0.97002 * 120.00733 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.6180 -1.3110 6 6 4.3761 -1.6328 -1.4089 7 7 5.5823 -1.1267 -1.4367 8 6 5.5168 0.2017 -1.3583 9 7 4.2622 0.5613 -1.2846 10 7 2.0196 -0.6925 1.1994 11 6 2.0825 0.2226 2.3469 12 6 2.5950 -0.5332 3.5744 13 1 1.9691 -1.4081 3.7500 14 6 4.0385 -0.9792 3.3329 15 6 2.5428 0.3850 4.7971 16 6 2.9306 -0.3942 6.0274 17 1 3.1888 -1.4396 5.9454 18 6 2.9556 0.2276 7.2578 19 7 2.6407 1.5005 7.3579 20 14 3.4369 -0.7381 8.7827 21 1 4.8152 -1.2663 8.6196 22 1 3.3850 0.1527 9.9697 23 1 2.4927 -1.8686 8.9712 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 4.1276 -2.6828 -1.4573 30 1 6.3629 0.8730 -1.3602 31 1 1.4495 -1.4979 1.4100 32 1 2.7589 1.0461 2.1181 33 1 1.0871 0.6163 2.5525 34 1 4.4036 -1.5180 4.2072 35 1 4.0757 -1.6332 2.4618 36 1 4.6646 -0.1043 3.1573 37 1 3.2365 1.2143 4.6588 38 1 1.5314 0.7734 4.9169 39 1 2.6579 1.9379 8.2235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590593432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:22 Heat of formation + Delta-G solvation = 71.085548 kcal Electronic energy + Delta-G solvation = -18625.517558 eV Core-core repulsion = 15797.445411 eV Total energy + Delta-G solvation = -2828.072147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88588 -37.86996 -35.34186 -33.21838 -32.08118 -31.05824 -29.78934 -26.83962 -26.74452 -25.06105 -22.67862 -22.12698 -21.85362 -20.67904 -19.04189 -17.35625 -16.38816 -15.83012 -15.28884 -15.09656 -14.63259 -14.43078 -14.24236 -13.85511 -13.38826 -13.01899 -12.76699 -12.62637 -12.24657 -11.97906 -11.75742 -11.51836 -11.33855 -11.08563 -10.84478 -10.77477 -10.30589 -10.28288 -9.90166 -9.71918 -9.65286 -9.56321 -9.14759 -8.95920 -8.32410 -8.20718 -5.97064 -3.98456 1.77935 2.41493 3.11232 3.34741 3.39092 3.41645 4.09347 4.40703 4.43852 4.49948 4.75075 4.92711 4.99457 5.12829 5.19408 5.36670 5.38579 5.53380 5.65732 5.77538 5.87515 5.96528 6.14644 6.33299 6.41919 6.53390 6.55664 6.66709 6.89828 6.98986 7.15943 7.18254 7.29052 7.56969 7.68815 7.84946 8.02643 8.20518 8.46490 9.07531 9.64916 11.14443 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.004546 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.433739 B = 6158.334098 C = 6732.310971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.091 0.909 4 C 0.142 3.858 5 N -0.357 5.357 6 C 0.258 3.742 7 N -0.553 5.553 8 C 0.193 3.807 9 N -0.315 5.315 10 N -0.680 5.680 11 C 0.069 3.931 12 C -0.081 4.081 13 H 0.052 0.948 14 C -0.118 4.118 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.212 0.788 30 H 0.211 0.789 31 H 0.337 0.663 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -5.200 -19.002 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.109 0.891 4 C 0.019 3.981 5 N -0.147 5.147 6 C -0.039 4.039 7 N -0.280 5.280 8 C -0.110 4.110 9 N -0.144 5.144 10 N -0.310 5.310 11 C -0.060 4.060 12 C -0.100 4.100 13 H 0.071 0.929 14 C -0.175 4.175 15 C -0.009 4.009 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.228 0.772 30 H 0.227 0.773 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.248 -4.416 -19.007 19.643 hybrid contribution -0.906 -0.512 1.267 1.639 sum -3.153 -4.927 -17.741 18.680 Atomic orbital electron populations 1.22447 0.96135 1.02432 1.02993 1.21843 0.92817 0.99281 0.90363 0.89073 1.21885 0.74485 1.02714 0.99030 1.50226 1.07712 1.04222 1.52545 1.25852 0.84894 0.96472 0.96689 1.70490 1.22945 1.09178 1.25418 1.25858 0.94674 0.91620 0.98830 1.77960 1.04561 1.06361 1.25474 1.60590 1.56287 1.10027 1.04127 1.22137 0.98876 0.95105 0.89838 1.21187 0.96193 0.98566 0.94009 0.92947 1.21535 0.96281 0.99989 0.99732 1.19105 0.96846 0.94329 0.90651 1.21185 1.45453 0.96481 0.92047 0.92667 1.25013 0.95559 0.94873 0.99034 1.69951 1.49103 1.10048 1.24574 0.86691 0.79131 0.79820 0.82555 1.20237 1.21345 1.20329 0.91985 0.92148 0.91556 0.88353 0.89517 0.77193 0.77256 0.84556 0.91666 0.95664 0.92839 0.94304 0.94366 0.96631 0.96999 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.16 37.16 0.34 -1.21 16 2 C 0.07 0.73 2.72 -67.72 -0.18 0.55 16 3 H 0.09 1.21 7.76 -51.93 -0.40 0.80 16 4 C 0.14 1.21 6.18 -4.05 -0.02 1.19 16 5 N -0.36 -4.16 3.62 -62.63 -0.23 -4.39 16 6 C 0.26 2.90 12.63 -90.66 -1.14 1.75 16 7 N -0.55 -7.59 11.19 -15.83 -0.18 -7.77 16 8 C 0.19 2.58 13.03 -91.82 -1.20 1.38 16 9 N -0.32 -4.46 12.54 29.29 0.37 -4.09 16 10 N -0.68 -8.99 5.63 -106.73 -0.60 -9.59 16 11 C 0.07 1.18 4.87 -3.82 -0.02 1.16 16 12 C -0.08 -1.65 2.48 -90.62 -0.22 -1.88 16 13 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 15 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 16 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 27 H 0.10 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.21 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.34 4.05 8.47 -39.29 -0.33 3.72 16 32 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 33 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 34 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 35 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -33.35 325.81 -9.07 -42.42 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.42 Total: -0.04 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.63 Total: -11.81 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.10 Total: -52.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.35 -9.07 -42.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.506 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds