Wall clock time and date at job start Mon Mar 30 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00288 * 2 1 4 4 C 1.52999 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.53000 * 115.55118 * 325.58094 * 4 3 2 6 6 N 1.46893 * 109.46939 * 34.41598 * 5 4 3 7 7 C 1.46910 * 110.99761 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46906 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47407 * 304.99784 * 8 7 6 10 10 C 1.47206 * 109.47021 * 65.00197 * 8 7 6 11 11 N 4.57291 * 105.37045 * 196.32730 * 2 1 3 12 12 C 1.52997 * 109.46817 * 185.00004 * 8 7 6 13 13 C 1.50698 * 109.46933 * 175.00167 * 12 8 7 14 14 H 1.08003 * 120.00121 * 0.02562 * 13 12 8 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 8 16 16 N 1.31510 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47095 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47107 * 120.00101 * 17 15 13 20 20 H 1.48503 * 109.47150 * 240.00344 * 17 15 13 21 21 C 1.53003 * 117.49669 * 111.25131 * 4 3 2 22 22 C 1.53004 * 117.49492 * 179.91025 * 4 3 2 23 23 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47143 * 300.00214 * 1 2 3 25 25 H 1.09001 * 109.47126 * 60.00355 * 1 2 3 26 26 H 1.09004 * 109.47129 * 59.99711 * 3 2 1 27 27 H 1.09001 * 109.46712 * 299.99983 * 3 2 1 28 28 H 1.09003 * 109.46988 * 274.41982 * 5 4 3 29 29 H 1.08993 * 109.46782 * 154.41917 * 5 4 3 30 30 H 1.00899 * 110.99952 * 56.05048 * 6 5 4 31 31 H 1.08997 * 109.46998 * 60.00442 * 7 6 5 32 32 H 1.08997 * 109.46873 * 300.00074 * 7 6 5 33 33 H 1.08998 * 109.47192 * 294.99969 * 12 8 7 34 34 H 1.09000 * 109.47325 * 55.00085 * 12 8 7 35 35 H 0.97004 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08997 * 117.49655 * 215.00173 * 21 4 3 37 37 H 1.08998 * 117.49697 * 0.02562 * 21 4 3 38 38 H 1.09000 * 117.50079 * 359.97438 * 22 4 3 39 39 H 1.08996 * 117.49560 * 145.00069 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1031 -0.0026 0.7813 6 7 3.1902 -1.1474 0.6637 7 6 3.7043 -2.3087 1.4021 8 6 2.7291 -3.4785 1.2558 9 1 1.7353 -3.1653 1.5757 10 6 2.6801 -3.9033 -0.1528 11 7 2.6411 -4.2315 -1.2396 12 6 3.1999 -4.6466 2.1246 13 6 2.1771 -5.7522 2.0770 14 1 1.2810 -5.6339 1.4858 15 6 2.3857 -6.9154 2.7874 16 7 3.4771 -7.0598 3.5068 17 14 1.1175 -8.2857 2.7289 18 1 -0.0117 -7.8782 1.8547 19 1 1.7442 -9.5174 2.1852 20 1 0.6120 -8.5512 4.0998 21 6 4.2791 1.6189 -1.2640 22 6 4.3469 2.4817 -0.0014 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 4.2098 0.2706 1.8312 29 1 5.0779 -0.2718 0.3750 30 1 3.0240 -1.3794 -0.3041 31 1 3.8086 -2.0518 2.4562 32 1 4.6763 -2.5939 0.9997 33 1 4.1536 -5.0174 1.7491 34 1 3.3215 -4.3081 3.1536 35 1 3.6236 -7.8780 4.0069 36 1 5.1726 1.0589 -1.5398 37 1 3.6817 1.9912 -2.0963 38 1 3.7941 3.4212 -0.0036 39 1 5.2851 2.4893 0.5534 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594552182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:32 Heat of formation + Delta-G solvation = 9.313634 kcal Electronic energy + Delta-G solvation = -18575.293333 eV Core-core repulsion = 15712.249804 eV Total energy + Delta-G solvation = -2863.043529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06499 -37.02823 -36.53434 -34.62211 -33.34307 -31.35786 -28.21330 -27.07692 -25.40351 -24.67272 -22.69802 -22.20358 -21.70866 -19.36961 -16.68420 -16.53427 -16.22785 -15.76791 -15.63462 -15.06396 -14.63127 -14.25395 -13.89021 -13.57421 -13.17858 -12.86222 -12.62548 -12.43322 -12.20176 -12.04125 -11.72700 -11.61043 -11.39734 -11.15414 -10.99336 -10.68836 -10.59870 -10.59256 -10.36062 -10.18993 -9.99928 -9.44699 -9.31409 -9.14116 -8.41273 -7.85898 -6.05086 -4.07549 3.31309 3.39292 3.41758 3.44460 3.69581 3.75802 3.94871 4.29961 4.45595 4.68526 4.88828 4.93705 4.98679 5.11465 5.30634 5.33033 5.43182 5.44215 5.52212 5.60144 5.64272 5.69362 5.73077 5.86006 5.91903 5.93232 5.93961 6.08266 6.30911 6.51540 6.66552 7.38934 7.44813 7.51178 7.61071 7.81261 7.90866 8.29500 8.52969 8.97541 9.57535 11.05959 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.004564 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.368382 B = 6132.902579 C = 6443.171363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.336 6.336 3 C 0.105 3.895 4 C -0.122 4.122 5 C 0.102 3.898 6 N -0.657 5.657 7 C 0.065 3.935 8 C 0.010 3.990 9 H 0.110 0.890 10 C 0.245 3.755 11 N -0.482 5.482 12 C 0.031 3.969 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.177 4.177 22 C -0.166 4.166 23 H 0.085 0.915 24 H 0.035 0.965 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.345 0.655 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.023 0.977 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 19.420 -4.049 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.253 6.253 3 C 0.028 3.972 4 C -0.122 4.122 5 C -0.028 4.028 6 N -0.290 5.290 7 C -0.065 4.065 8 C -0.012 4.012 9 H 0.128 0.872 10 C -0.071 4.071 11 N -0.159 5.159 12 C -0.007 4.007 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.214 4.214 22 C -0.204 4.204 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.165 0.835 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.612 18.833 -5.067 19.512 hybrid contribution -0.112 -0.767 -0.150 0.789 sum -0.724 18.066 -5.217 18.818 Atomic orbital electron populations 1.22718 0.83032 1.02655 0.98650 1.88402 1.17422 1.24552 1.94908 1.21758 0.90179 0.86392 0.98906 1.21558 0.93223 0.96470 1.00995 1.21356 0.92785 0.89436 0.99224 1.60485 1.45180 1.04830 1.18524 1.22092 0.95341 0.89252 0.99800 1.19278 1.01948 0.96408 0.83543 0.87222 1.29317 0.91738 0.91425 0.94635 1.81007 1.10233 1.10714 1.13918 1.19169 0.97110 0.90133 0.94319 1.21207 1.05571 1.00416 1.28937 0.92471 1.24955 0.95471 0.98397 0.95202 1.69952 1.25738 1.27019 1.30440 0.86551 0.81720 0.82096 0.77801 1.19683 1.21054 1.20864 1.23224 1.02743 1.03677 0.91751 1.22995 1.01750 0.94130 1.01486 0.89660 0.94662 0.95465 0.93464 0.94462 0.90764 0.95673 0.83542 0.89526 0.95475 0.95878 0.94291 0.92927 0.88744 0.88852 0.88708 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.34 -4.43 6.76 -35.23 -0.24 -4.67 16 3 C 0.11 1.14 6.07 37.16 0.23 1.37 16 4 C -0.12 -1.28 2.46 -154.51 -0.38 -1.66 16 5 C 0.10 1.22 5.82 -3.83 -0.02 1.20 16 6 N -0.66 -9.44 3.85 -113.78 -0.44 -9.88 16 7 C 0.07 1.03 5.12 -3.82 -0.02 1.01 16 8 C 0.01 0.20 2.42 -93.40 -0.23 -0.03 16 9 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 10 C 0.25 5.17 12.98 -20.76 -0.27 4.90 16 11 N -0.48 -10.88 18.54 42.15 0.78 -10.10 16 12 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 13 C -0.52 -14.18 8.60 -34.44 -0.30 -14.48 16 14 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.18 -1.65 9.83 -26.69 -0.26 -1.92 16 22 C -0.17 -1.37 9.98 -26.69 -0.27 -1.64 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.37 7.90 -51.93 -0.41 -0.04 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.30 7.90 -51.93 -0.41 -0.11 16 30 H 0.34 5.42 6.81 -39.29 -0.27 5.15 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -30.00 329.76 -6.36 -36.37 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.53 Total: -0.47 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.62 Total: -7.60 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.08 Total: -45.16 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.24 Total: -4.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.00 -6.36 -36.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594552182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.683 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds