Wall clock time and date at job start Mon Mar 30 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00288 * 2 1 4 4 C 1.52999 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.53000 * 115.55118 * 325.58094 * 4 3 2 6 6 N 1.46893 * 109.46939 * 34.41598 * 5 4 3 7 7 C 1.46910 * 110.99761 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46906 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47407 * 304.99784 * 8 7 6 10 10 C 1.47206 * 109.47021 * 65.00197 * 8 7 6 11 11 N 4.57291 * 105.37045 * 196.32730 * 2 1 3 12 12 C 1.52997 * 109.46817 * 185.00004 * 8 7 6 13 13 C 1.50698 * 109.46933 * 175.00167 * 12 8 7 14 14 H 1.08003 * 120.00121 * 0.02562 * 13 12 8 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 8 16 16 N 1.31510 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47095 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47107 * 120.00101 * 17 15 13 20 20 H 1.48503 * 109.47150 * 240.00344 * 17 15 13 21 21 C 1.53003 * 117.49669 * 111.25131 * 4 3 2 22 22 C 1.53004 * 117.49492 * 179.91025 * 4 3 2 23 23 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47143 * 300.00214 * 1 2 3 25 25 H 1.09001 * 109.47126 * 60.00355 * 1 2 3 26 26 H 1.09004 * 109.47129 * 59.99711 * 3 2 1 27 27 H 1.09001 * 109.46712 * 299.99983 * 3 2 1 28 28 H 1.09003 * 109.46988 * 274.41982 * 5 4 3 29 29 H 1.08993 * 109.46782 * 154.41917 * 5 4 3 30 30 H 1.00899 * 110.99952 * 56.05048 * 6 5 4 31 31 H 1.08997 * 109.46998 * 60.00442 * 7 6 5 32 32 H 1.08997 * 109.46873 * 300.00074 * 7 6 5 33 33 H 1.08998 * 109.47192 * 294.99969 * 12 8 7 34 34 H 1.09000 * 109.47325 * 55.00085 * 12 8 7 35 35 H 0.97004 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08997 * 117.49655 * 215.00173 * 21 4 3 37 37 H 1.08998 * 117.49697 * 0.02562 * 21 4 3 38 38 H 1.09000 * 117.50079 * 359.97438 * 22 4 3 39 39 H 1.08996 * 117.49560 * 145.00069 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1031 -0.0026 0.7813 6 7 3.1902 -1.1474 0.6637 7 6 3.7043 -2.3087 1.4021 8 6 2.7291 -3.4785 1.2558 9 1 1.7353 -3.1653 1.5757 10 6 2.6801 -3.9033 -0.1528 11 7 2.6411 -4.2315 -1.2396 12 6 3.1999 -4.6466 2.1246 13 6 2.1771 -5.7522 2.0770 14 1 1.2810 -5.6339 1.4858 15 6 2.3857 -6.9154 2.7874 16 7 3.4771 -7.0598 3.5068 17 14 1.1175 -8.2857 2.7289 18 1 -0.0117 -7.8782 1.8547 19 1 1.7442 -9.5174 2.1852 20 1 0.6120 -8.5512 4.0998 21 6 4.2791 1.6189 -1.2640 22 6 4.3469 2.4817 -0.0014 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 4.2098 0.2706 1.8312 29 1 5.0779 -0.2718 0.3750 30 1 3.0240 -1.3794 -0.3041 31 1 3.8086 -2.0518 2.4562 32 1 4.6763 -2.5939 0.9997 33 1 4.1536 -5.0174 1.7491 34 1 3.3215 -4.3081 3.1536 35 1 3.6236 -7.8780 4.0069 36 1 5.1726 1.0589 -1.5398 37 1 3.6817 1.9912 -2.0963 38 1 3.7941 3.4212 -0.0036 39 1 5.2851 2.4893 0.5534 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594552182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:32 Heat of formation + Delta-G solvation = -7.888249 kcal Electronic energy + Delta-G solvation = -18576.039263 eV Core-core repulsion = 15712.249804 eV Total energy + Delta-G solvation = -2863.789459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92919 -38.54479 -37.42962 -36.09711 -35.20291 -33.07345 -29.27297 -28.47463 -26.46818 -25.91635 -23.76538 -23.52219 -23.18647 -20.22101 -18.50220 -18.18766 -17.31477 -16.71766 -16.63043 -16.45861 -16.11492 -15.29372 -15.05013 -14.84462 -14.59470 -14.29296 -13.95197 -13.87954 -13.55580 -13.44798 -13.13763 -13.03770 -12.68563 -12.46742 -12.39446 -12.28377 -12.21219 -11.93246 -11.54177 -11.45073 -11.25349 -10.98763 -10.79098 -10.54406 -10.15341 -8.98566 -8.18248 -6.26353 1.39804 1.42411 1.53358 1.99147 2.02307 2.42539 2.65404 3.14406 3.17017 3.31448 3.35629 3.96070 4.02010 4.11255 4.29874 4.31830 4.46743 4.53585 4.63816 4.69210 4.72304 4.77280 4.80146 4.85276 5.00260 5.03241 5.05480 5.06084 5.07535 5.23917 5.27783 5.49223 5.65470 5.81315 6.17264 6.31125 6.58701 6.61070 6.80265 6.89782 7.42087 8.93041 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.004564 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.368382 B = 6132.902579 C = 6443.171363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.104 3.896 4 C -0.140 4.140 5 C 0.101 3.899 6 N -0.655 5.655 7 C 0.076 3.924 8 C 0.024 3.976 9 H 0.119 0.881 10 C 0.255 3.745 11 N -0.508 5.508 12 C 0.038 3.962 13 C -0.537 4.537 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.181 4.181 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.336 0.664 31 H 0.100 0.900 32 H 0.023 0.977 33 H -0.002 1.002 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 20.800 -3.995 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.279 6.279 3 C 0.027 3.973 4 C -0.140 4.140 5 C -0.028 4.028 6 N -0.287 5.287 7 C -0.055 4.055 8 C 0.002 3.998 9 H 0.137 0.863 10 C -0.061 4.061 11 N -0.186 5.186 12 C -0.001 4.001 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.218 4.218 22 C -0.183 4.183 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.155 0.845 31 H 0.118 0.882 32 H 0.041 0.959 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.095 20.233 -5.013 20.874 hybrid contribution 0.055 -1.158 -0.179 1.174 sum -1.041 19.075 -5.192 19.796 Atomic orbital electron populations 1.22743 0.82388 1.02305 0.99713 1.88340 1.18321 1.26139 1.95111 1.21856 0.90260 0.85602 0.99612 1.21541 0.93284 0.97182 1.01995 1.21413 0.92351 0.89092 0.99968 1.60513 1.45790 1.04631 1.17730 1.21947 0.93952 0.88697 1.00862 1.19165 1.03180 0.95942 0.81532 0.86293 1.29653 0.90876 0.90699 0.94893 1.81001 1.11260 1.11465 1.14849 1.18992 0.95263 0.90967 0.94835 1.21587 1.06012 1.01503 1.28429 0.92846 1.25722 0.97242 1.00746 0.95078 1.70044 1.27290 1.27803 1.31314 0.85627 0.79475 0.79156 0.78212 1.19370 1.21106 1.19731 1.23267 1.02454 1.04017 0.92034 1.23087 1.01534 0.93613 1.00049 0.90757 0.93707 0.94267 0.92893 0.93500 0.90196 0.95710 0.84459 0.88219 0.95891 0.98318 0.94664 0.92731 0.89151 0.88328 0.87133 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.36 -9.11 6.76 -148.98 -1.01 -10.11 16 3 C 0.10 2.06 6.07 71.98 0.44 2.50 16 4 C -0.14 -2.66 2.46 -52.18 -0.13 -2.79 16 5 C 0.10 2.27 5.82 86.30 0.50 2.78 16 6 N -0.65 -18.10 3.85 -513.89 -1.98 -20.08 16 7 C 0.08 2.32 5.12 86.30 0.44 2.76 16 8 C 0.02 0.90 2.42 -12.60 -0.03 0.87 16 9 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 10 C 0.25 10.70 12.98 89.44 1.16 11.86 16 11 N -0.51 -22.93 18.54 20.01 0.37 -22.56 16 12 C 0.04 1.83 4.42 29.85 0.13 1.96 16 13 C -0.54 -29.14 8.60 25.60 0.22 -28.92 16 14 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 15 C 0.01 0.60 5.46 84.66 0.46 1.07 16 16 N -0.92 -53.88 13.29 21.45 0.28 -53.59 16 17 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 C -0.18 -3.03 9.83 30.62 0.30 -2.73 16 22 C -0.15 -2.01 9.98 30.62 0.31 -1.70 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.05 0.83 7.90 -2.39 -0.02 0.81 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.02 0.56 7.90 -2.39 -0.02 0.54 16 30 H 0.34 10.35 6.81 -89.69 -0.61 9.74 16 31 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 37 H 0.10 1.54 8.05 -2.39 -0.02 1.52 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.87 329.76 5.16 -57.71 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.41 Total: 13.11 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.05 Total: -10.57 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -1.32 Total: -96.23 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.01 Total: -10.11 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.87 5.16 -57.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594552182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.826 kcal (2) G-P(sol) polarization free energy of solvation -62.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds