Wall clock time and date at job start Mon Mar 30 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99485 * 2 1 4 4 C 1.53006 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.52997 * 115.55096 * 294.90074 * 4 3 2 6 6 N 1.46904 * 109.47104 * 294.93384 * 5 4 3 7 7 C 1.46906 * 110.99811 * 174.69995 * 6 5 4 8 8 C 1.53001 * 109.46757 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47546 * 54.99902 * 8 7 6 10 10 C 1.47205 * 109.47008 * 295.00156 * 8 7 6 11 11 N 7.27201 * 124.27460 * 49.70944 * 2 1 3 12 12 C 1.52999 * 109.46890 * 175.00235 * 8 7 6 13 13 C 1.50704 * 109.47106 * 184.99590 * 12 8 7 14 14 H 1.07997 * 120.00208 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99995 * 179.97438 * 13 12 8 16 16 N 1.31512 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47133 * 90.00271 * 17 15 13 19 19 H 1.48498 * 109.47468 * 210.00268 * 17 15 13 20 20 H 1.48505 * 109.47401 * 330.00094 * 17 15 13 21 21 C 1.52992 * 117.49878 * 80.57240 * 4 3 2 22 22 C 1.53002 * 117.49571 * 149.23076 * 4 3 2 23 23 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47103 * 299.99305 * 1 2 3 25 25 H 1.08992 * 109.47560 * 59.99418 * 1 2 3 26 26 H 1.09002 * 109.47280 * 60.00476 * 3 2 1 27 27 H 1.08998 * 109.47481 * 300.00293 * 3 2 1 28 28 H 1.09004 * 109.47239 * 174.93421 * 5 4 3 29 29 H 1.08997 * 109.47293 * 54.93693 * 5 4 3 30 30 H 1.00896 * 111.00328 * 298.65532 * 6 5 4 31 31 H 1.08998 * 109.47241 * 299.99884 * 7 6 5 32 32 H 1.08996 * 109.46943 * 60.00223 * 7 6 5 33 33 H 1.08997 * 109.47253 * 304.99860 * 12 8 7 34 34 H 1.09000 * 109.47194 * 65.00140 * 12 8 7 35 35 H 0.97001 * 120.00468 * 179.97438 * 16 15 13 36 36 H 1.08997 * 117.50124 * 215.00276 * 21 4 3 37 37 H 1.09004 * 117.50031 * 0.02562 * 21 4 3 38 38 H 1.08995 * 117.50188 * 359.97438 * 22 4 3 39 39 H 1.09006 * 117.49344 * 144.99685 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1479 0.5531 1.2510 6 7 3.9007 1.4223 2.4092 7 6 4.3644 0.7891 3.6511 8 6 4.0899 1.7219 4.8324 9 1 3.0328 1.9870 4.8481 10 6 4.8998 2.9431 4.6918 11 7 5.5243 3.8859 4.5837 12 6 4.4577 1.0135 6.1377 13 6 4.0736 1.8835 7.3068 14 1 3.6130 2.8452 7.1360 15 6 4.3095 1.4511 8.5946 16 7 4.8700 0.2798 8.8027 17 14 3.8328 2.5291 10.0437 18 1 2.4417 2.2149 10.4580 19 1 4.7569 2.2717 11.1773 20 1 3.9207 3.9577 9.6480 21 6 4.2216 0.9077 -1.3397 22 6 4.3314 2.2917 -0.6951 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 5.2221 0.4335 1.1092 29 1 3.6937 -0.4223 1.4252 30 1 4.3309 2.3260 2.2816 31 1 3.8333 -0.1510 3.7999 32 1 5.4347 0.5948 3.5821 33 1 3.9236 0.0654 6.1994 34 1 5.5315 0.8279 6.1603 35 1 5.0363 -0.0243 9.7087 36 1 5.1093 0.2753 -1.3291 37 1 3.5864 0.8118 -2.2204 38 1 3.7685 3.1056 -1.1518 39 1 5.2914 2.5698 -0.2601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594552183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:35 Heat of formation + Delta-G solvation = -9.915332 kcal Electronic energy + Delta-G solvation = -18118.652990 eV Core-core repulsion = 15254.775630 eV Total energy + Delta-G solvation = -2863.877360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.12015 -37.33550 -36.66217 -34.72117 -33.40397 -31.42285 -28.38082 -27.23229 -25.61264 -24.81597 -22.81270 -22.18010 -21.78235 -19.29471 -16.75578 -16.66543 -16.37787 -16.11892 -15.84852 -15.04242 -14.74034 -14.44493 -14.18265 -13.87577 -13.21424 -12.92028 -12.62377 -12.40355 -12.14247 -12.09654 -11.80026 -11.72589 -11.59258 -11.24129 -11.07805 -11.00485 -10.70454 -10.56471 -10.36158 -10.24833 -10.07003 -9.64834 -9.49859 -9.21074 -8.44607 -8.27008 -6.08561 -4.11655 3.29924 3.32372 3.36689 3.41286 3.57950 3.63541 3.95651 4.26705 4.42833 4.62254 4.72454 4.81914 4.91083 4.98627 5.17014 5.29435 5.30103 5.37912 5.48225 5.53290 5.57463 5.58586 5.72357 5.77271 5.79418 5.90735 5.96310 6.04685 6.19980 6.38773 6.56447 7.12373 7.14440 7.44967 7.49638 7.54964 7.86514 8.24324 8.41151 8.92932 9.53716 11.02379 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.004136 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.452325 B = 6768.574444 C = 7232.744655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.116 4.116 5 C 0.099 3.901 6 N -0.689 5.689 7 C 0.068 3.932 8 C 0.007 3.993 9 H 0.110 0.890 10 C 0.242 3.758 11 N -0.478 5.478 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.166 4.166 22 C -0.170 4.170 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.085 0.915 30 H 0.336 0.664 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 -1.600 -19.086 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.116 4.116 5 C -0.030 4.030 6 N -0.319 5.319 7 C -0.061 4.061 8 C -0.015 4.015 9 H 0.128 0.872 10 C -0.075 4.075 11 N -0.155 5.155 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.203 4.203 22 C -0.207 4.207 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.378 -0.676 -19.020 19.777 hybrid contribution 0.304 0.553 0.903 1.101 sum -5.074 -0.123 -18.118 18.815 Atomic orbital electron populations 1.22701 0.81307 1.02540 0.99812 1.87866 1.19255 1.27935 1.95374 1.21869 0.90376 0.84594 1.00228 1.21337 0.93015 1.03552 0.93718 1.21369 0.96877 0.96919 0.87869 1.60455 1.63655 1.05996 1.01836 1.22068 0.98429 0.98021 0.87624 1.19333 0.98020 0.86345 0.97789 0.87185 1.29344 0.92965 0.94181 0.90961 1.81031 1.11200 1.12202 1.11084 1.19166 0.97900 0.95934 0.87657 1.21150 1.40802 1.03650 0.90830 0.92521 1.24950 0.94922 0.95065 0.99024 1.69937 1.42731 1.19008 1.21369 0.86593 0.78409 0.80958 0.82130 1.20432 1.21174 1.19891 1.22990 1.02684 0.98814 0.95849 1.23026 1.01677 0.92296 1.03698 0.89828 0.93809 0.94646 0.91398 0.94162 0.95306 0.89623 0.84601 0.88990 0.94821 0.94176 0.95764 0.92803 0.88697 0.88674 0.88691 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.60 10.61 -35.23 -0.37 -4.97 16 3 C 0.11 1.16 5.70 37.16 0.21 1.37 16 4 C -0.12 -1.25 1.98 -154.51 -0.31 -1.55 16 5 C 0.10 1.19 5.46 -3.82 -0.02 1.17 16 6 N -0.69 -9.35 6.31 -113.77 -0.72 -10.07 16 7 C 0.07 1.04 5.11 -3.82 -0.02 1.02 16 8 C 0.01 0.13 2.42 -93.40 -0.23 -0.09 16 9 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 10 C 0.24 4.93 12.98 -20.76 -0.27 4.66 16 11 N -0.48 -10.46 18.54 42.16 0.78 -9.68 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 13 C -0.53 -14.10 8.60 -34.44 -0.30 -14.39 16 14 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 C -0.17 -1.54 9.94 -26.70 -0.27 -1.80 16 22 C -0.17 -1.61 9.94 -26.69 -0.27 -1.87 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 27 H 0.04 0.39 8.09 -51.93 -0.42 -0.04 16 28 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.34 4.71 7.86 -39.29 -0.31 4.40 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -29.83 336.43 -6.68 -36.52 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.59 Total: -0.48 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.57 Total: -7.84 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.80 Total: -44.68 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.37 Total: -4.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.83 -6.68 -36.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594552183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.600 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds