Wall clock time and date at job start Mon Mar 30 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99485 * 2 1 4 4 C 1.53006 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.52997 * 115.55096 * 294.90074 * 4 3 2 6 6 N 1.46904 * 109.47104 * 294.93384 * 5 4 3 7 7 C 1.46906 * 110.99811 * 174.69995 * 6 5 4 8 8 C 1.53001 * 109.46757 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47546 * 54.99902 * 8 7 6 10 10 C 1.47205 * 109.47008 * 295.00156 * 8 7 6 11 11 N 7.27201 * 124.27460 * 49.70944 * 2 1 3 12 12 C 1.52999 * 109.46890 * 175.00235 * 8 7 6 13 13 C 1.50704 * 109.47106 * 184.99590 * 12 8 7 14 14 H 1.07997 * 120.00208 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99995 * 179.97438 * 13 12 8 16 16 N 1.31512 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47133 * 90.00271 * 17 15 13 19 19 H 1.48498 * 109.47468 * 210.00268 * 17 15 13 20 20 H 1.48505 * 109.47401 * 330.00094 * 17 15 13 21 21 C 1.52992 * 117.49878 * 80.57240 * 4 3 2 22 22 C 1.53002 * 117.49571 * 149.23076 * 4 3 2 23 23 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47103 * 299.99305 * 1 2 3 25 25 H 1.08992 * 109.47560 * 59.99418 * 1 2 3 26 26 H 1.09002 * 109.47280 * 60.00476 * 3 2 1 27 27 H 1.08998 * 109.47481 * 300.00293 * 3 2 1 28 28 H 1.09004 * 109.47239 * 174.93421 * 5 4 3 29 29 H 1.08997 * 109.47293 * 54.93693 * 5 4 3 30 30 H 1.00896 * 111.00328 * 298.65532 * 6 5 4 31 31 H 1.08998 * 109.47241 * 299.99884 * 7 6 5 32 32 H 1.08996 * 109.46943 * 60.00223 * 7 6 5 33 33 H 1.08997 * 109.47253 * 304.99860 * 12 8 7 34 34 H 1.09000 * 109.47194 * 65.00140 * 12 8 7 35 35 H 0.97001 * 120.00468 * 179.97438 * 16 15 13 36 36 H 1.08997 * 117.50124 * 215.00276 * 21 4 3 37 37 H 1.09004 * 117.50031 * 0.02562 * 21 4 3 38 38 H 1.08995 * 117.50188 * 359.97438 * 22 4 3 39 39 H 1.09006 * 117.49344 * 144.99685 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1479 0.5531 1.2510 6 7 3.9007 1.4223 2.4092 7 6 4.3644 0.7891 3.6511 8 6 4.0899 1.7219 4.8324 9 1 3.0328 1.9870 4.8481 10 6 4.8998 2.9431 4.6918 11 7 5.5243 3.8859 4.5837 12 6 4.4577 1.0135 6.1377 13 6 4.0736 1.8835 7.3068 14 1 3.6130 2.8452 7.1360 15 6 4.3095 1.4511 8.5946 16 7 4.8700 0.2798 8.8027 17 14 3.8328 2.5291 10.0437 18 1 2.4417 2.2149 10.4580 19 1 4.7569 2.2717 11.1773 20 1 3.9207 3.9577 9.6480 21 6 4.2216 0.9077 -1.3397 22 6 4.3314 2.2917 -0.6951 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 5.2221 0.4335 1.1092 29 1 3.6937 -0.4223 1.4252 30 1 4.3309 2.3260 2.2816 31 1 3.8333 -0.1510 3.7999 32 1 5.4347 0.5948 3.5821 33 1 3.9236 0.0654 6.1994 34 1 5.5315 0.8279 6.1603 35 1 5.0363 -0.0243 9.7087 36 1 5.1093 0.2753 -1.3291 37 1 3.5864 0.8118 -2.2204 38 1 3.7685 3.1056 -1.1518 39 1 5.2914 2.5698 -0.2601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594552183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:35 Heat of formation + Delta-G solvation = -28.528249 kcal Electronic energy + Delta-G solvation = -18119.460106 eV Core-core repulsion = 15254.775630 eV Total energy + Delta-G solvation = -2864.684476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98104 -38.69867 -37.62893 -36.14015 -35.23108 -33.11746 -29.33235 -28.63171 -26.59643 -26.02300 -23.99381 -23.58243 -23.08024 -20.15046 -18.54200 -18.24304 -17.43003 -17.04407 -16.67497 -16.63422 -16.03683 -15.50119 -15.28873 -14.91469 -14.75053 -14.36850 -14.17196 -13.90729 -13.47275 -13.19699 -13.16677 -13.04932 -12.70185 -12.49567 -12.43533 -12.35702 -12.33232 -12.07551 -11.84891 -11.43860 -11.23294 -11.05596 -10.82562 -10.54839 -10.41885 -9.37461 -8.19395 -6.27853 1.40665 1.42159 1.51511 1.93486 1.95790 2.41508 2.55504 3.13243 3.15627 3.24803 3.31757 3.83914 3.88104 4.04587 4.19226 4.19957 4.39871 4.48097 4.61264 4.62395 4.66218 4.75850 4.78312 4.90844 4.93917 4.95903 4.98019 5.01276 5.07917 5.18457 5.25678 5.47124 5.62135 5.79207 6.01030 6.21110 6.35554 6.37668 6.74733 6.87113 7.40811 8.91651 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.004136 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.452325 B = 6768.574444 C = 7232.744655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.107 3.893 4 C -0.132 4.132 5 C 0.102 3.898 6 N -0.686 5.686 7 C 0.080 3.920 8 C 0.020 3.980 9 H 0.122 0.878 10 C 0.252 3.748 11 N -0.503 5.503 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.275 1.275 21 C -0.156 4.156 22 C -0.165 4.165 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.335 0.665 31 H 0.101 0.899 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.000 1.000 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -1.255 -20.099 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.031 3.969 4 C -0.132 4.132 5 C -0.027 4.027 6 N -0.317 5.317 7 C -0.051 4.051 8 C -0.001 4.001 9 H 0.140 0.860 10 C -0.064 4.064 11 N -0.181 5.181 12 C -0.001 4.001 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.194 4.194 22 C -0.202 4.202 23 H 0.112 0.888 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.160 -0.329 -20.047 20.975 hybrid contribution 0.534 0.429 1.185 1.368 sum -5.627 0.100 -18.862 19.684 Atomic orbital electron populations 1.22851 0.80043 1.03485 1.00445 1.87833 1.20772 1.28553 1.95497 1.21861 0.90415 0.84335 1.00286 1.21321 0.93134 1.04964 0.93793 1.21346 0.97154 0.96371 0.87836 1.60428 1.63432 1.06065 1.01733 1.21898 0.98576 0.97410 0.87171 1.19206 0.98173 0.85781 0.96981 0.86026 1.29634 0.92477 0.94102 0.90203 1.81031 1.12017 1.13105 1.11937 1.18989 0.96174 0.95749 0.89180 1.21555 1.40232 1.03873 0.92118 0.92768 1.25718 0.95102 0.96236 1.01690 1.70034 1.43937 1.20449 1.21968 0.85674 0.78614 0.79051 0.79113 1.19154 1.20985 1.20044 1.23051 1.02571 0.98600 0.95161 1.23070 1.01332 0.92607 1.03165 0.88820 0.93976 0.93183 0.92661 0.92732 0.94939 0.90358 0.84765 0.88046 0.94963 0.94636 0.98125 0.92698 0.88282 0.87754 0.87605 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.16 10.61 -148.98 -1.58 -10.74 16 3 C 0.11 2.18 5.70 71.98 0.41 2.60 16 4 C -0.13 -2.62 1.98 -52.18 -0.10 -2.73 16 5 C 0.10 2.33 5.46 86.30 0.47 2.80 16 6 N -0.69 -17.80 6.31 -513.87 -3.24 -21.04 16 7 C 0.08 2.33 5.11 86.30 0.44 2.77 16 8 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 9 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 10 C 0.25 10.09 12.98 89.44 1.16 11.25 16 11 N -0.50 -21.74 18.54 20.01 0.37 -21.37 16 12 C 0.04 1.77 4.42 29.85 0.13 1.90 16 13 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 14 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 15 C 0.01 0.63 5.46 84.66 0.46 1.09 16 16 N -0.92 -53.41 13.29 21.45 0.28 -53.12 16 17 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.16 -2.57 9.94 30.62 0.30 -2.27 16 22 C -0.16 -2.79 9.94 30.62 0.30 -2.49 16 23 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 27 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.03 0.72 8.09 -2.39 -0.02 0.70 16 29 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 30 H 0.34 8.97 7.86 -89.70 -0.71 8.26 16 31 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -62.17 336.43 3.19 -58.98 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.31 Total: 12.90 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.02 Total: -11.25 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -2.58 Total: -95.53 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.58 Total: -10.74 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.17 3.19 -58.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594552183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.447 kcal (2) G-P(sol) polarization free energy of solvation -62.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds