Wall clock time and date at job start Mon Mar 30 2020 04:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46566 * 2 1 4 4 N 1.30832 * 125.96304 * 264.99684 * 3 2 1 5 5 C 1.33239 * 109.82960 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.52527 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47039 * 350.96885 * 6 5 4 8 8 C 1.53005 * 109.46691 * 110.96884 * 6 5 4 9 9 N 1.46899 * 109.47019 * 230.96776 * 6 5 4 10 10 C 1.46900 * 111.00277 * 287.31328 * 9 6 5 11 11 C 1.52993 * 109.47356 * 163.82814 * 10 9 6 12 12 C 1.46904 * 110.99403 * 163.36503 * 9 6 5 13 13 C 1.50709 * 109.46462 * 202.51322 * 12 9 6 14 14 H 1.07994 * 120.00203 * 357.84427 * 13 12 9 15 15 C 1.37878 * 119.99555 * 177.84125 * 13 12 9 16 16 N 1.31513 * 120.00003 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46941 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46984 * 120.00333 * 17 15 13 20 20 H 1.48504 * 109.46712 * 240.00063 * 17 15 13 21 21 N 1.30710 * 108.95099 * 0.26703 * 5 4 3 22 22 N 1.34429 * 125.96000 * 84.98460 * 3 2 1 23 23 H 0.96992 * 126.82187 * 0.02562 * 22 3 2 24 24 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46937 * 300.00033 * 1 2 3 26 26 H 1.08996 * 109.47403 * 60.00031 * 1 2 3 27 27 H 1.08999 * 109.46601 * 240.00623 * 2 1 3 28 28 H 1.08996 * 109.47403 * 119.99969 * 2 1 3 29 29 H 1.09003 * 109.47015 * 59.99956 * 8 6 5 30 30 H 1.08999 * 109.46929 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47007 * 299.99783 * 8 6 5 32 32 H 1.09008 * 109.46822 * 43.82913 * 10 9 6 33 33 H 1.08999 * 109.47551 * 283.83317 * 10 9 6 34 34 H 1.09000 * 109.47017 * 70.76521 * 11 10 9 35 35 H 1.08997 * 109.47453 * 190.76941 * 11 10 9 36 36 H 1.09004 * 109.47401 * 310.76770 * 11 10 9 37 37 H 1.08993 * 109.47236 * 322.50711 * 12 9 6 38 38 H 1.08997 * 109.47281 * 82.51776 * 12 9 6 39 39 H 0.97008 * 119.99934 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7709 3.3322 -0.6861 6 6 3.2421 4.4194 -1.6174 7 1 3.3634 4.0110 -2.6207 8 6 2.2093 5.5479 -1.6476 9 7 4.5291 4.9459 -1.1440 10 6 4.3511 5.7659 0.0618 11 6 5.7031 5.9593 0.7513 12 6 5.2080 5.7061 -2.2020 13 6 6.6868 5.7548 -1.9155 14 1 7.0782 5.2996 -1.0177 15 6 7.5400 6.3804 -2.7996 16 7 7.0633 6.9351 -3.8926 17 14 9.3731 6.4402 -2.4448 18 1 9.6516 5.7478 -1.1610 19 1 10.1117 5.7645 -3.5416 20 1 9.8130 7.8554 -2.3502 21 7 2.6901 3.4289 0.6149 22 7 2.2056 2.1968 1.0839 23 1 2.0339 1.9530 2.0069 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0879 5.9562 -0.6443 30 1 2.5502 6.3344 -2.3208 31 1 1.2543 5.1571 -1.9989 32 1 3.6639 5.2648 0.7437 33 1 3.9428 6.7375 -0.2165 34 1 6.3255 6.6227 0.1508 35 1 5.5489 6.3989 1.7366 36 1 6.1982 4.9940 0.8576 37 1 5.0400 5.2205 -3.1632 38 1 4.8103 6.7205 -2.2328 39 1 7.6636 7.3756 -4.5144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:41 Heat of formation + Delta-G solvation = 83.976930 kcal Electronic energy + Delta-G solvation = -19022.026464 eV Core-core repulsion = 16194.513329 eV Total energy + Delta-G solvation = -2827.513135 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.93931 -37.62693 -34.34368 -32.91960 -32.24528 -31.02603 -29.71109 -28.47778 -26.29345 -24.51351 -23.96909 -22.32607 -20.91446 -20.40245 -18.74095 -17.66928 -16.37842 -15.60282 -14.90432 -14.63719 -14.60956 -14.25852 -13.95232 -13.89116 -13.10484 -12.74136 -12.33963 -12.20676 -12.04628 -11.73747 -11.70950 -11.37587 -11.24800 -11.03707 -10.83465 -10.75101 -10.51704 -10.31268 -10.14857 -9.85571 -9.72402 -9.33431 -9.19169 -9.03231 -8.31295 -7.19996 -5.93966 -3.92152 1.81056 2.79815 3.14907 3.36172 3.43687 3.48993 4.01860 4.49724 4.64815 4.79185 4.93037 5.03334 5.18681 5.32575 5.41109 5.49299 5.61937 5.71782 5.78684 5.86776 6.05337 6.11891 6.31960 6.36395 6.41169 6.53330 6.55031 6.71428 6.84768 7.01066 7.22615 7.24104 7.41121 7.46781 7.93076 8.18859 8.31045 8.38873 8.62949 9.14462 9.69508 11.16761 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.004953 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.588347 B = 5651.576478 C = 5667.314105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.275 3.725 4 N -0.534 5.534 5 C 0.261 3.739 6 C 0.168 3.832 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.526 5.526 10 C 0.057 3.943 11 C -0.141 4.141 12 C 0.194 3.806 13 C -0.498 4.498 14 H 0.072 0.928 15 C 0.052 3.948 16 N -0.901 5.901 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.286 1.286 21 N -0.303 5.303 22 N -0.492 5.492 23 H 0.434 0.566 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.051 0.949 37 H 0.029 0.971 38 H -0.004 1.004 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 -10.843 9.159 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.004 4.004 4 N -0.263 5.263 5 C -0.022 4.022 6 C 0.056 3.944 7 H 0.121 0.879 8 C -0.234 4.234 9 N -0.251 5.251 10 C -0.071 4.071 11 C -0.199 4.199 12 C 0.069 3.931 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.148 4.148 16 N -0.541 5.541 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 N -0.131 5.131 22 N -0.209 5.209 23 H 0.278 0.722 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.014 0.986 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.357 -10.581 9.133 18.656 hybrid contribution 0.399 0.419 0.517 0.776 sum -11.958 -10.162 9.650 18.422 Atomic orbital electron populations 1.21747 0.93495 1.02605 1.02730 1.20129 0.96598 0.86807 1.04923 1.24270 0.96689 0.96091 0.83350 1.70331 1.21735 1.04774 1.29444 1.24332 0.95040 0.92903 0.89926 1.20010 0.90017 0.89390 0.95020 0.87939 1.22431 0.98992 0.99348 1.02658 1.62216 1.15963 1.39567 1.07348 1.22099 0.97815 0.94664 0.92550 1.21924 0.97972 1.02192 0.97771 1.19815 0.93855 0.90836 0.88552 1.21394 0.91262 1.34036 1.06935 0.91016 1.24985 0.98740 0.95964 0.95133 1.69972 1.34893 1.37803 1.11441 0.86506 0.85558 0.77480 0.78295 1.19686 1.21150 1.21237 1.78018 1.22008 1.00285 1.12801 1.48080 1.51886 1.10985 1.09954 0.72220 0.91235 0.92726 0.91642 0.87964 0.89665 0.92095 0.91067 0.92894 0.90885 0.96000 0.90152 0.95141 0.92941 0.95286 0.98573 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.04 -0.36 6.56 -27.88 -0.18 -0.55 16 3 C 0.27 3.65 7.49 -155.69 -1.17 2.48 16 4 N -0.53 -9.32 11.19 -8.16 -0.09 -9.41 16 5 C 0.26 4.92 6.89 -156.85 -1.08 3.84 16 6 C 0.17 3.34 2.83 -68.86 -0.19 3.15 16 7 H 0.10 2.11 7.64 -51.93 -0.40 1.72 16 8 C -0.17 -3.05 8.38 37.16 0.31 -2.73 16 9 N -0.53 -11.92 4.34 -229.47 -1.00 -12.92 16 10 C 0.06 1.19 4.19 -3.83 -0.02 1.17 16 11 C -0.14 -2.94 8.53 37.15 0.32 -2.62 16 12 C 0.19 5.08 4.28 -4.97 -0.02 5.06 16 13 C -0.50 -13.99 7.21 -34.44 -0.25 -14.24 16 14 H 0.07 2.01 5.79 -52.49 -0.30 1.71 16 15 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 N -0.30 -5.32 10.35 32.42 0.34 -4.98 16 22 N -0.49 -6.45 7.45 32.62 0.24 -6.21 16 23 H 0.43 3.89 8.96 -182.33 -1.63 2.26 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.05 6.56 -51.93 -0.34 0.71 16 30 H 0.07 1.29 7.54 -51.93 -0.39 0.89 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.45 5.28 -51.92 -0.27 1.17 16 33 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 34 H 0.08 1.86 6.02 -51.93 -0.31 1.54 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 1.14 7.75 -51.93 -0.40 0.73 16 37 H 0.03 0.81 7.58 -51.93 -0.39 0.42 16 38 H 0.00 -0.10 7.44 -51.93 -0.39 -0.48 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -32.94 311.98 -9.39 -42.33 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.29 Total: -0.65 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.01 Total: -3.67 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.23 Total: -59.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.94 -9.39 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.309 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds