Wall clock time and date at job start Mon Mar 30 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47575 * 2 1 4 4 N 1.30836 * 125.96064 * 265.30899 * 3 2 1 5 5 C 1.33234 * 109.82564 * 180.11964 * 4 3 2 6 6 C 1.50700 * 125.52706 * 179.85274 * 5 4 3 7 7 H 1.09008 * 109.46871 * 18.16814 * 6 5 4 8 8 C 1.52995 * 109.47317 * 258.16890 * 6 5 4 9 9 N 1.46903 * 109.47596 * 138.16375 * 6 5 4 10 10 C 1.46907 * 110.99466 * 71.83354 * 9 6 5 11 11 C 1.53004 * 109.46736 * 198.43170 * 10 9 6 12 12 C 1.46896 * 111.00259 * 195.79050 * 9 6 5 13 13 C 1.50697 * 109.47124 * 156.96552 * 12 9 6 14 14 H 1.08003 * 120.00083 * 354.52365 * 13 12 9 15 15 C 1.37875 * 120.00274 * 174.52089 * 13 12 9 16 16 N 1.31516 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00378 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47147 * 59.99906 * 17 15 13 19 19 H 1.48489 * 109.47264 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47115 * 300.00208 * 17 15 13 21 21 N 1.30714 * 108.94995 * 359.58960 * 5 4 3 22 22 N 1.34431 * 125.95903 * 84.97447 * 3 2 1 23 23 H 0.96995 * 126.82356 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.46785 * 300.00214 * 1 2 3 25 25 H 1.09004 * 109.46895 * 59.99510 * 1 2 3 26 26 H 1.08995 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46971 * 240.00281 * 2 1 3 28 28 H 1.09000 * 109.47114 * 120.00054 * 2 1 3 29 29 H 1.09003 * 109.47254 * 179.97438 * 8 6 5 30 30 H 1.08998 * 109.47264 * 299.99745 * 8 6 5 31 31 H 1.09001 * 109.47227 * 59.99866 * 8 6 5 32 32 H 1.08995 * 109.47155 * 318.43534 * 10 9 6 33 33 H 1.08998 * 109.46934 * 78.43816 * 10 9 6 34 34 H 1.08994 * 109.47139 * 48.70143 * 11 10 9 35 35 H 1.09001 * 109.46528 * 168.69687 * 11 10 9 36 36 H 1.08999 * 109.46941 * 288.69801 * 11 10 9 37 37 H 1.09001 * 109.46849 * 276.96072 * 12 9 6 38 38 H 1.08997 * 109.47195 * 36.96517 * 12 9 6 39 39 H 0.97005 * 119.99766 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3702 2.1163 -1.0555 5 6 2.7709 3.3321 -0.6862 6 6 3.2408 4.4197 -1.6176 7 1 2.9099 4.1973 -2.6321 8 6 4.7685 4.4947 -1.5844 9 7 2.6779 5.7076 -1.1902 10 6 3.3158 6.1762 0.0473 11 6 2.4320 7.2370 0.7065 12 6 2.7939 6.7123 -2.2555 13 6 1.7601 7.7885 -2.0457 14 1 1.0278 7.6878 -1.2583 15 6 1.7491 8.9019 -2.8589 16 7 2.6412 9.0249 -3.8174 17 14 0.4673 10.2357 -2.5993 18 1 0.6034 10.7932 -1.2296 19 1 0.6699 11.3176 -3.5959 20 1 -0.8900 9.6567 -2.7654 21 7 2.6849 3.4306 0.6143 22 7 2.2057 2.1968 1.0839 23 1 2.0338 1.9531 2.0069 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.1085 5.2811 -2.2583 30 1 5.0995 4.7171 -0.5699 31 1 5.1862 3.5392 -1.9015 32 1 3.4458 5.3363 0.7297 33 1 4.2888 6.6082 -0.1866 34 1 1.4056 6.8739 0.7578 35 1 2.7967 7.4389 1.7137 36 1 2.4642 8.1537 0.1178 37 1 3.7896 7.1551 -2.2304 38 1 2.6320 6.2366 -3.2228 39 1 2.6333 9.8080 -4.3898 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:44 Heat of formation + Delta-G solvation = 83.256873 kcal Electronic energy + Delta-G solvation = -19050.739368 eV Core-core repulsion = 16223.195009 eV Total energy + Delta-G solvation = -2827.544359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94046 -37.60810 -34.32191 -32.91280 -32.24852 -30.96933 -29.72074 -28.50314 -26.25276 -24.48725 -23.94624 -22.32622 -20.94497 -20.38074 -18.73711 -17.64872 -16.35250 -15.50545 -15.07584 -14.69414 -14.58172 -14.00643 -13.96883 -13.90832 -13.08873 -12.83800 -12.32955 -12.14350 -12.01063 -11.72056 -11.69308 -11.37564 -11.22453 -11.03410 -10.81813 -10.78488 -10.52631 -10.28192 -10.09772 -9.85674 -9.71467 -9.36971 -9.14574 -9.11812 -8.30828 -7.19311 -5.93514 -3.91915 1.81559 2.80434 3.14683 3.39026 3.42742 3.46254 4.01587 4.49309 4.64933 4.79690 4.94585 5.02022 5.23765 5.34073 5.40820 5.51762 5.63720 5.71638 5.78659 5.93146 6.06077 6.13916 6.33650 6.37861 6.41670 6.54792 6.56248 6.71979 6.86207 7.03572 7.22721 7.24419 7.43936 7.48189 7.93264 8.19558 8.30302 8.38880 8.63849 9.14558 9.69510 11.16877 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.005189 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.589032 B = 5394.472009 C = 5568.600224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C 0.274 3.726 4 N -0.536 5.536 5 C 0.259 3.741 6 C 0.168 3.832 7 H 0.102 0.898 8 C -0.174 4.174 9 N -0.527 5.527 10 C 0.059 3.941 11 C -0.138 4.138 12 C 0.194 3.806 13 C -0.496 4.496 14 H 0.068 0.932 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 N -0.298 5.298 22 N -0.492 5.492 23 H 0.434 0.566 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.002 0.998 38 H 0.024 0.976 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -16.621 9.183 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.005 4.005 4 N -0.265 5.265 5 C -0.024 4.024 6 C 0.056 3.944 7 H 0.120 0.880 8 C -0.234 4.234 9 N -0.251 5.251 10 C -0.069 4.069 11 C -0.196 4.196 12 C 0.069 3.931 13 C -0.535 4.535 14 H 0.086 0.914 15 C -0.148 4.148 16 N -0.541 5.541 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.203 1.203 21 N -0.126 5.126 22 N -0.209 5.209 23 H 0.278 0.722 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.042 0.958 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.233 -15.982 9.138 18.411 hybrid contribution -0.031 0.599 0.542 0.809 sum -0.264 -15.382 9.680 18.177 Atomic orbital electron populations 1.21755 0.93369 1.02574 1.03040 1.20120 0.96789 0.86738 1.04676 1.24278 0.96818 0.96016 0.83382 1.70315 1.21765 1.05107 1.29290 1.24342 0.95571 0.92529 0.90000 1.20004 0.92125 0.87051 0.95237 0.87981 1.22422 0.96245 1.02136 1.02602 1.62207 1.54882 1.01952 1.06105 1.22087 0.95040 0.97719 0.92049 1.21851 0.99546 1.00578 0.97611 1.19810 0.96441 0.88679 0.88147 1.21227 1.13995 1.02586 1.15667 0.91414 1.24973 0.96067 0.98324 0.95404 1.69951 1.35318 1.29362 1.19518 0.86618 0.82079 0.81316 0.77740 1.20315 1.21494 1.20307 1.78081 1.22447 0.99109 1.12955 1.48122 1.52243 1.10628 1.09955 0.72217 0.92623 0.91457 0.91261 0.88085 0.89773 0.91002 0.92271 0.92783 0.90924 0.96031 0.93002 0.95179 0.90359 0.97988 0.95814 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.75 16 2 C -0.04 -0.35 6.56 -27.88 -0.18 -0.53 16 3 C 0.27 3.60 7.49 -155.69 -1.17 2.43 16 4 N -0.54 -9.22 11.19 -8.16 -0.09 -9.32 16 5 C 0.26 4.86 6.93 -156.86 -1.09 3.77 16 6 C 0.17 3.34 2.82 -68.87 -0.19 3.15 16 7 H 0.10 2.09 7.66 -51.92 -0.40 1.69 16 8 C -0.17 -3.05 8.42 37.16 0.31 -2.74 16 9 N -0.53 -11.92 4.33 -229.47 -0.99 -12.91 16 10 C 0.06 1.24 4.10 -3.82 -0.02 1.23 16 11 C -0.14 -2.90 8.65 37.16 0.32 -2.58 16 12 C 0.19 5.08 4.25 -4.98 -0.02 5.05 16 13 C -0.50 -13.94 7.04 -34.44 -0.24 -14.19 16 14 H 0.07 1.91 6.40 -52.48 -0.34 1.57 16 15 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 16 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 N -0.30 -5.27 10.20 32.42 0.33 -4.94 16 22 N -0.49 -6.47 7.45 32.62 0.24 -6.22 16 23 H 0.43 3.92 8.96 -182.34 -1.63 2.29 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.30 7.51 -51.93 -0.39 0.91 16 30 H 0.06 1.02 6.58 -51.93 -0.34 0.68 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.44 5.17 -51.93 -0.27 1.17 16 33 H 0.02 0.46 7.00 -51.93 -0.36 0.09 16 34 H 0.05 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.83 6.16 -51.93 -0.32 1.51 16 37 H 0.00 0.06 7.40 -51.93 -0.38 -0.32 16 38 H 0.02 0.66 7.58 -51.93 -0.39 0.26 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -32.79 312.55 -9.42 -42.21 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.33 Total: -0.62 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.01 Total: -3.73 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.23 Total: -59.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.79 -9.42 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.471 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds