Wall clock time and date at job start Mon Mar 30 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46898 * 2 1 4 4 N 1.30833 * 125.96751 * 265.27217 * 3 2 1 5 5 C 1.33232 * 109.82974 * 180.19352 * 4 3 2 6 6 C 1.50709 * 125.52255 * 179.85174 * 5 4 3 7 7 H 1.08999 * 109.47114 * 344.72635 * 6 5 4 8 8 C 1.53004 * 109.46656 * 104.72182 * 6 5 4 9 9 N 1.46895 * 109.47309 * 224.71704 * 6 5 4 10 10 C 1.46899 * 111.00055 * 153.86703 * 9 6 5 11 11 H 1.09000 * 109.46680 * 34.10295 * 10 9 6 12 12 C 1.50695 * 109.47291 * 274.10455 * 10 9 6 13 13 H 1.08007 * 120.00069 * 0.02562 * 12 10 9 14 14 C 1.37874 * 120.00057 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00248 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00199 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47196 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47134 * 119.99922 * 16 14 12 19 19 H 1.48495 * 109.47355 * 240.00393 * 16 14 12 20 20 C 1.52996 * 109.47076 * 154.10525 * 10 9 6 21 21 C 1.53009 * 109.47143 * 295.91028 * 20 10 9 22 22 N 1.30708 * 108.94984 * 359.59344 * 5 4 3 23 23 N 1.34434 * 125.96041 * 85.02570 * 3 2 1 24 24 H 0.97001 * 126.82378 * 359.93046 * 23 3 2 25 25 H 1.09003 * 109.46676 * 299.99423 * 1 2 3 26 26 H 1.08996 * 109.47358 * 60.00158 * 1 2 3 27 27 H 1.08997 * 109.46523 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47180 * 240.00734 * 2 1 3 29 29 H 1.08996 * 109.47358 * 119.99842 * 2 1 3 30 30 H 1.09000 * 109.47458 * 56.00159 * 8 6 5 31 31 H 1.09005 * 109.47343 * 296.00071 * 8 6 5 32 32 H 1.09000 * 109.47142 * 176.00551 * 8 6 5 33 33 H 1.00904 * 110.99630 * 29.91163 * 9 6 5 34 34 H 0.96995 * 119.99883 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47569 * 55.91055 * 20 10 9 36 36 H 1.09002 * 109.47251 * 175.90934 * 20 10 9 37 37 H 1.09003 * 109.46763 * 305.16450 * 21 20 10 38 38 H 1.08999 * 109.46876 * 65.16401 * 21 20 10 39 39 H 1.08997 * 109.46889 * 185.16707 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3707 2.1163 -1.0553 5 6 2.7724 3.3317 -0.6859 6 6 3.2434 4.4189 -1.6172 7 1 3.4648 3.9897 -2.5944 8 6 2.1474 5.4769 -1.7614 9 7 4.4559 5.0416 -1.0696 10 6 5.2793 5.6209 -2.1394 11 1 4.6323 6.0066 -2.9273 12 6 6.1845 4.5587 -2.7077 13 1 6.1512 3.5535 -2.3140 14 6 7.0545 4.8697 -3.7311 15 7 7.0948 6.0935 -4.2110 16 14 8.1772 3.5531 -4.4352 17 1 7.9400 2.2696 -3.7269 18 1 7.8903 3.3798 -5.8819 19 1 9.5933 3.9629 -4.2569 20 6 6.1258 6.7614 -1.5705 21 6 5.2077 7.8853 -1.0859 22 7 2.6867 3.4300 0.6147 23 7 2.2065 2.1966 1.0840 24 1 2.0341 1.9530 2.0070 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.8759 5.8554 -0.7760 31 1 1.2718 5.0310 -2.2333 32 1 2.5138 6.2978 -2.3778 33 1 4.9866 4.3802 -0.5227 34 1 7.7071 6.3123 -4.9307 35 1 6.7194 6.3913 -0.7346 36 1 6.7893 7.1433 -2.3464 37 1 4.5497 8.1930 -1.8987 38 1 4.6082 7.5290 -0.2482 39 1 5.8110 8.7347 -0.7656 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:47 Heat of formation + Delta-G solvation = 44.635931 kcal Electronic energy + Delta-G solvation = -18873.607619 eV Core-core repulsion = 16044.388531 eV Total energy + Delta-G solvation = -2829.219088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.17895 -38.50672 -35.75674 -34.63344 -33.61836 -32.97237 -30.95852 -30.23220 -27.89764 -25.39400 -25.18716 -24.11239 -21.78301 -21.25181 -20.83760 -18.90014 -18.62961 -16.89802 -16.67441 -16.37798 -15.80543 -15.48293 -15.09356 -15.03281 -14.56269 -13.86511 -13.74540 -13.44510 -13.23028 -13.13185 -13.09746 -12.92717 -12.61578 -12.51716 -12.45015 -12.31304 -12.07137 -11.94081 -11.50164 -11.45720 -11.11285 -11.04430 -10.95971 -10.46837 -10.44388 -9.13246 -8.05857 -6.26917 0.60853 1.36155 1.38626 1.48927 1.74549 1.82962 2.40285 2.91211 3.14564 3.48293 3.68995 3.92927 4.28013 4.30340 4.41622 4.52474 4.65163 4.68500 4.78699 4.83549 4.97700 4.98559 5.01666 5.06551 5.19087 5.22613 5.30444 5.32673 5.39986 5.46245 5.53455 5.64814 5.78254 6.10567 6.17683 6.24077 6.36580 6.70575 6.95926 7.15532 7.43703 8.91387 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.006030 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.277753 B = 4642.094551 C = 5554.120609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C 0.286 3.714 4 N -0.574 5.574 5 C 0.224 3.776 6 C 0.180 3.820 7 H 0.043 0.957 8 C -0.117 4.117 9 N -0.660 5.660 10 C 0.223 3.777 11 H 0.011 0.989 12 C -0.559 4.559 13 H 0.039 0.961 14 C 0.025 3.975 15 N -0.906 5.906 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.100 4.100 21 C -0.123 4.123 22 N -0.315 5.315 23 N -0.475 5.475 24 H 0.454 0.546 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.324 0.676 34 H 0.263 0.737 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -10.437 9.976 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C 0.007 3.993 4 N -0.304 5.304 5 C -0.059 4.059 6 C 0.068 3.932 7 H 0.061 0.939 8 C -0.176 4.176 9 N -0.290 5.290 10 C 0.114 3.886 11 H 0.029 0.971 12 C -0.599 4.599 13 H 0.058 0.942 14 C -0.175 4.175 15 N -0.545 5.545 16 Si 0.774 3.226 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.138 4.138 21 C -0.180 4.180 22 N -0.144 5.144 23 N -0.194 5.194 24 H 0.303 0.697 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.343 -9.156 10.018 18.346 hybrid contribution 1.154 -1.532 -0.526 1.989 sum -11.190 -10.688 9.492 18.154 Atomic orbital electron populations 1.21732 0.92072 1.04166 1.02109 1.20445 0.97598 0.83547 1.06647 1.25194 0.94499 0.97397 0.82177 1.70341 1.23311 1.05074 1.31695 1.24271 0.97746 0.93363 0.90556 1.19643 0.92326 0.88968 0.92300 0.93921 1.21628 0.96223 0.97626 1.02082 1.61018 1.07350 1.36299 1.24339 1.19031 0.89928 0.92136 0.87495 0.97093 1.22113 1.22512 0.96192 1.19037 0.94240 1.25580 0.98157 0.97141 0.96658 1.69991 1.38164 1.19342 1.27034 0.85676 0.79076 0.79619 0.78244 1.20202 1.20411 1.20217 1.21335 0.98199 0.95822 0.98479 1.21544 0.99001 0.97320 1.00163 1.78001 1.22255 1.01978 1.12142 1.47950 1.51012 1.09332 1.11156 0.69685 0.91946 0.93698 0.88572 0.88086 0.86035 0.91970 0.91955 0.92206 0.85990 0.92748 0.95701 0.91754 0.94626 0.92657 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 71.98 0.71 -0.90 16 2 C -0.04 -0.60 6.56 29.85 0.20 -0.41 16 3 C 0.29 7.31 7.49 138.23 1.04 8.35 16 4 N -0.57 -20.61 11.19 -179.72 -2.01 -22.62 16 5 C 0.22 8.67 6.63 138.64 0.92 9.58 16 6 C 0.18 7.61 2.96 44.17 0.13 7.74 16 7 H 0.04 2.06 7.66 -2.39 -0.02 2.04 16 8 C -0.12 -4.28 9.41 71.98 0.68 -3.61 16 9 N -0.66 -29.88 5.55 -477.16 -2.65 -32.52 16 10 C 0.22 11.48 1.78 44.17 0.08 11.56 16 11 H 0.01 0.63 7.18 -2.39 -0.02 0.61 16 12 C -0.56 -31.60 8.31 25.60 0.21 -31.38 16 13 H 0.04 2.28 7.73 -2.91 -0.02 2.26 16 14 C 0.03 1.41 5.30 84.65 0.45 1.86 16 15 N -0.91 -52.29 11.30 21.45 0.24 -52.05 16 16 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 C -0.10 -4.93 5.45 30.60 0.17 -4.76 16 21 C -0.12 -5.10 9.73 71.99 0.70 -4.40 16 22 N -0.31 -11.02 12.78 -51.33 -0.66 -11.67 16 23 N -0.47 -11.72 7.45 -50.70 -0.38 -12.09 16 24 H 0.45 7.00 8.96 -213.10 -1.91 5.09 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.06 2.27 7.49 -2.39 -0.02 2.25 16 33 H 0.32 15.32 8.00 -89.69 -0.72 14.60 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 3.53 5.97 -2.39 -0.01 3.52 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.36 323.21 0.27 -68.09 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -1.58 Total: 22.48 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.28 Total: -6.36 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.45 Total: -130.96 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.36 0.27 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.724 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds