Wall clock time and date at job start Mon Mar 30 2020 04:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47162 * 2 1 4 4 N 1.30838 * 125.96223 * 264.99908 * 3 2 1 5 5 C 1.33231 * 109.82769 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.52491 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47021 * 14.99657 * 6 5 4 8 8 C 1.52999 * 109.47021 * 254.99879 * 6 5 4 9 9 N 1.46900 * 109.47176 * 134.99928 * 6 5 4 10 10 C 1.46897 * 110.99883 * 208.23606 * 9 6 5 11 11 H 1.09004 * 109.47165 * 325.82414 * 10 9 6 12 12 C 1.50704 * 109.47246 * 85.82175 * 10 9 6 13 13 H 1.07993 * 119.99983 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00032 * 179.72110 * 12 10 9 15 15 N 1.31520 * 120.00083 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00246 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47299 * 120.00000 * 16 14 12 19 19 H 1.48496 * 109.47345 * 240.00723 * 16 14 12 20 20 C 1.53003 * 109.47235 * 205.82246 * 10 9 6 21 21 C 1.52997 * 109.46705 * 65.28626 * 20 10 9 22 22 N 1.30708 * 108.95206 * 0.26223 * 5 4 3 23 23 N 1.34425 * 125.96301 * 84.97959 * 3 2 1 24 24 H 0.97005 * 126.82071 * 0.02562 * 23 3 2 25 25 H 1.09003 * 109.47199 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47077 * 300.00199 * 1 2 3 28 28 H 1.08999 * 109.46601 * 239.99665 * 2 1 3 29 29 H 1.09000 * 109.46850 * 120.00323 * 2 1 3 30 30 H 1.09001 * 109.47355 * 303.69467 * 8 6 5 31 31 H 1.09001 * 109.47194 * 63.69548 * 8 6 5 32 32 H 1.09000 * 109.47036 * 183.69489 * 8 6 5 33 33 H 1.00900 * 110.99792 * 84.27970 * 9 6 5 34 34 H 0.97001 * 119.99847 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47209 * 185.28341 * 20 10 9 36 36 H 1.08999 * 109.47021 * 305.28797 * 20 10 9 37 37 H 1.08999 * 109.46905 * 178.67399 * 21 20 10 38 38 H 1.09002 * 109.47023 * 298.66808 * 21 20 10 39 39 H 1.08995 * 109.47508 * 58.67630 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3755 2.1144 -1.0550 5 6 2.7712 3.3320 -0.6862 6 6 3.2413 4.4195 -1.6176 7 1 2.9638 4.1666 -2.6409 8 6 4.7624 4.5524 -1.5198 9 7 2.6133 5.6928 -1.2402 10 6 2.4745 6.5769 -2.4051 11 1 3.3193 6.4272 -3.0776 12 6 1.1928 6.2556 -3.1297 13 1 0.5458 5.4733 -2.7615 14 6 0.8430 6.9647 -4.2593 15 7 1.6282 7.9212 -4.7046 16 14 -0.7461 6.5671 -5.1570 17 1 -1.4450 5.4584 -4.4586 18 1 -1.6187 7.7685 -5.1747 19 1 -0.4382 6.1583 -6.5510 20 6 2.4455 8.0339 -1.9391 21 6 3.7966 8.3984 -1.3207 22 7 2.6903 3.4287 0.6148 23 7 2.2057 2.1968 1.0839 24 1 2.0339 1.9530 2.0069 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0449 4.7403 -0.4839 31 1 5.2305 3.6295 -1.8623 32 1 5.0955 5.3819 -2.1435 33 1 3.1303 6.1460 -0.5018 34 1 1.3819 8.4203 -5.4991 35 1 2.2487 8.6841 -2.7914 36 1 1.6591 8.1618 -1.1952 37 1 3.7839 9.4431 -1.0100 38 1 3.9826 7.7640 -0.4541 39 1 4.5858 8.2481 -2.0573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:50 Heat of formation + Delta-G solvation = 68.262472 kcal Electronic energy + Delta-G solvation = -18910.803995 eV Core-core repulsion = 16082.609430 eV Total energy + Delta-G solvation = -2828.194565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.80170 -36.92526 -34.40653 -33.27976 -32.00504 -31.34004 -29.55246 -28.41536 -26.03187 -24.36937 -23.72113 -22.54552 -20.56538 -19.52575 -19.43498 -17.58031 -16.13603 -15.42800 -15.02405 -14.79441 -14.57325 -14.08304 -13.81870 -13.49018 -12.86286 -12.68254 -12.49806 -12.15912 -12.07661 -11.68047 -11.61323 -11.39961 -11.19493 -11.03242 -10.81363 -10.70793 -10.52281 -9.89576 -9.83166 -9.65177 -9.63156 -9.55247 -9.13500 -8.95910 -8.28956 -7.20171 -5.90440 -3.93714 1.91795 2.90866 3.28175 3.36727 3.44284 3.51229 4.13164 4.51779 4.73675 4.90072 5.03232 5.19975 5.35129 5.39217 5.56156 5.59286 5.72769 5.82882 5.85915 6.02102 6.18893 6.22831 6.23012 6.40902 6.48100 6.56036 6.66002 6.89619 6.90491 7.14104 7.22429 7.29905 7.54420 7.84122 8.00073 8.31591 8.45159 8.52620 8.81953 9.15025 9.71144 11.14803 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.006590 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.641921 B = 4247.615171 C = 5356.411771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C 0.271 3.729 4 N -0.533 5.533 5 C 0.262 3.738 6 C 0.178 3.822 7 H 0.109 0.891 8 C -0.171 4.171 9 N -0.676 5.676 10 C 0.220 3.780 11 H 0.007 0.993 12 C -0.489 4.489 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.126 4.126 21 C -0.150 4.150 22 N -0.304 5.304 23 N -0.493 5.493 24 H 0.433 0.567 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.325 0.675 34 H 0.258 0.742 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -12.446 9.959 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.008 4.008 4 N -0.262 5.262 5 C -0.021 4.021 6 C 0.064 3.936 7 H 0.126 0.874 8 C -0.231 4.231 9 N -0.308 5.308 10 C 0.113 3.887 11 H 0.024 0.976 12 C -0.528 4.528 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.164 4.164 21 C -0.208 4.208 22 N -0.132 5.132 23 N -0.210 5.210 24 H 0.277 0.723 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.115 -11.971 9.761 15.590 hybrid contribution -0.186 -0.162 0.066 0.255 sum 1.929 -12.133 9.827 15.732 Atomic orbital electron populations 1.21757 0.93416 1.02507 1.03088 1.20104 0.96774 0.86795 1.04580 1.24279 0.97009 0.96030 0.83443 1.70347 1.21485 1.05197 1.29178 1.24479 0.95274 0.92474 0.89871 1.19694 0.90708 0.87193 0.95959 0.87351 1.22450 0.96580 1.02229 1.01818 1.60505 1.53477 1.04135 1.12638 1.19203 0.96380 0.87398 0.85687 0.97560 1.21268 1.05524 1.17698 1.08347 0.92094 1.24933 0.97019 0.95275 0.97256 1.69879 1.37234 1.22680 1.23929 0.86511 0.83748 0.78137 0.79451 1.19841 1.21239 1.21192 1.21768 0.93349 1.00371 1.00920 1.21889 1.00149 0.99263 0.99482 1.78024 1.22552 0.99496 1.13141 1.48017 1.52397 1.10769 1.09866 0.72316 0.91386 0.91315 0.92666 0.88110 0.89864 0.92774 0.92641 0.91332 0.85668 0.93204 0.88083 0.94092 0.94442 0.94539 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.93 16 2 C -0.04 -0.39 6.56 -27.88 -0.18 -0.57 16 3 C 0.27 3.88 7.49 -155.69 -1.17 2.71 16 4 N -0.53 -9.94 11.19 -8.16 -0.09 -10.03 16 5 C 0.26 5.19 6.99 -156.86 -1.10 4.10 16 6 C 0.18 3.66 2.92 -68.86 -0.20 3.45 16 7 H 0.11 2.47 7.64 -51.93 -0.40 2.08 16 8 C -0.17 -2.94 9.13 37.16 0.34 -2.60 16 9 N -0.68 -15.06 6.03 -102.16 -0.62 -15.67 16 10 C 0.22 5.53 1.84 -68.86 -0.13 5.40 16 11 H 0.01 0.18 7.35 -51.93 -0.38 -0.20 16 12 C -0.49 -13.81 8.56 -34.44 -0.29 -14.10 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 15 N -0.90 -25.65 11.27 55.43 0.62 -25.03 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.13 -2.99 5.35 -26.73 -0.14 -3.14 16 21 C -0.15 -2.94 9.72 37.16 0.36 -2.58 16 22 N -0.30 -5.60 12.78 32.42 0.41 -5.19 16 23 N -0.49 -6.89 7.45 32.62 0.24 -6.64 16 24 H 0.43 4.20 8.96 -182.33 -1.63 2.57 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.19 7.66 -51.93 -0.40 0.79 16 33 H 0.32 6.76 6.20 -39.29 -0.24 6.52 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.10 2.69 5.92 -51.93 -0.31 2.38 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.65 6.48 -51.93 -0.34 0.32 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -32.11 321.08 -9.32 -41.42 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.47 Total: 6.08 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.24 Total: -6.79 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.57 Total: -62.56 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.11 -9.32 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.685 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds