Wall clock time and date at job start Mon Mar 30 2020 04:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47162 * 2 1 4 4 N 1.30838 * 125.96223 * 264.99908 * 3 2 1 5 5 C 1.33231 * 109.82769 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.52491 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47021 * 14.99657 * 6 5 4 8 8 C 1.52999 * 109.47021 * 254.99879 * 6 5 4 9 9 N 1.46900 * 109.47176 * 134.99928 * 6 5 4 10 10 C 1.46897 * 110.99883 * 208.23606 * 9 6 5 11 11 H 1.09004 * 109.47165 * 325.82414 * 10 9 6 12 12 C 1.50704 * 109.47246 * 85.82175 * 10 9 6 13 13 H 1.07993 * 119.99983 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00032 * 179.72110 * 12 10 9 15 15 N 1.31520 * 120.00083 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00246 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47299 * 120.00000 * 16 14 12 19 19 H 1.48496 * 109.47345 * 240.00723 * 16 14 12 20 20 C 1.53003 * 109.47235 * 205.82246 * 10 9 6 21 21 C 1.52997 * 109.46705 * 65.28626 * 20 10 9 22 22 N 1.30708 * 108.95206 * 0.26223 * 5 4 3 23 23 N 1.34425 * 125.96301 * 84.97959 * 3 2 1 24 24 H 0.97005 * 126.82071 * 0.02562 * 23 3 2 25 25 H 1.09003 * 109.47199 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47077 * 300.00199 * 1 2 3 28 28 H 1.08999 * 109.46601 * 239.99665 * 2 1 3 29 29 H 1.09000 * 109.46850 * 120.00323 * 2 1 3 30 30 H 1.09001 * 109.47355 * 303.69467 * 8 6 5 31 31 H 1.09001 * 109.47194 * 63.69548 * 8 6 5 32 32 H 1.09000 * 109.47036 * 183.69489 * 8 6 5 33 33 H 1.00900 * 110.99792 * 84.27970 * 9 6 5 34 34 H 0.97001 * 119.99847 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47209 * 185.28341 * 20 10 9 36 36 H 1.08999 * 109.47021 * 305.28797 * 20 10 9 37 37 H 1.08999 * 109.46905 * 178.67399 * 21 20 10 38 38 H 1.09002 * 109.47023 * 298.66808 * 21 20 10 39 39 H 1.08995 * 109.47508 * 58.67630 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3755 2.1144 -1.0550 5 6 2.7712 3.3320 -0.6862 6 6 3.2413 4.4195 -1.6176 7 1 2.9638 4.1666 -2.6409 8 6 4.7624 4.5524 -1.5198 9 7 2.6133 5.6928 -1.2402 10 6 2.4745 6.5769 -2.4051 11 1 3.3193 6.4272 -3.0776 12 6 1.1928 6.2556 -3.1297 13 1 0.5458 5.4733 -2.7615 14 6 0.8430 6.9647 -4.2593 15 7 1.6282 7.9212 -4.7046 16 14 -0.7461 6.5671 -5.1570 17 1 -1.4450 5.4584 -4.4586 18 1 -1.6187 7.7685 -5.1747 19 1 -0.4382 6.1583 -6.5510 20 6 2.4455 8.0339 -1.9391 21 6 3.7966 8.3984 -1.3207 22 7 2.6903 3.4287 0.6148 23 7 2.2057 2.1968 1.0839 24 1 2.0339 1.9530 2.0069 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0449 4.7403 -0.4839 31 1 5.2305 3.6295 -1.8623 32 1 5.0955 5.3819 -2.1435 33 1 3.1303 6.1460 -0.5018 34 1 1.3819 8.4203 -5.4991 35 1 2.2487 8.6841 -2.7914 36 1 1.6591 8.1618 -1.1952 37 1 3.7839 9.4431 -1.0100 38 1 3.9826 7.7640 -0.4541 39 1 4.5858 8.2481 -2.0573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:49 Heat of formation + Delta-G solvation = 46.180758 kcal Electronic energy + Delta-G solvation = -18911.761530 eV Core-core repulsion = 16082.609430 eV Total energy + Delta-G solvation = -2829.152100 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.08198 -38.69102 -35.75218 -34.65713 -33.66389 -32.97863 -30.84532 -30.00590 -28.01844 -25.41226 -25.16552 -24.31199 -21.76023 -21.38014 -20.90965 -18.80573 -18.28767 -16.82817 -16.72494 -16.29936 -15.90021 -15.48217 -15.19509 -14.95391 -14.42620 -14.30137 -13.90564 -13.49743 -13.31829 -13.15350 -13.09152 -12.84076 -12.69938 -12.53669 -12.43959 -12.27400 -11.98504 -11.95680 -11.59684 -11.47280 -11.11315 -10.98509 -10.93243 -10.42280 -10.38103 -9.03969 -8.05904 -6.16926 0.68720 1.38608 1.40409 1.52702 1.81703 1.91482 2.44434 2.96864 3.18976 3.62857 3.72432 3.98429 4.19665 4.29981 4.31557 4.42279 4.53713 4.59946 4.65168 4.72012 4.80080 4.92725 4.97746 5.04734 5.10054 5.15098 5.26052 5.32696 5.37535 5.38252 5.47004 5.62133 5.76540 5.90950 6.29613 6.37256 6.48423 6.95080 6.97755 7.22126 7.51473 8.97043 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.006590 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.641921 B = 4247.615171 C = 5356.411771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C 0.283 3.717 4 N -0.576 5.576 5 C 0.243 3.757 6 C 0.179 3.821 7 H 0.073 0.927 8 C -0.157 4.157 9 N -0.679 5.679 10 C 0.229 3.771 11 H -0.018 1.018 12 C -0.510 4.510 13 H 0.038 0.962 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.279 1.279 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.120 4.120 21 C -0.139 4.139 22 N -0.324 5.324 23 N -0.477 5.477 24 H 0.453 0.547 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.333 0.667 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -13.896 11.439 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C 0.005 3.995 4 N -0.306 5.306 5 C -0.040 4.040 6 C 0.066 3.934 7 H 0.092 0.908 8 C -0.217 4.217 9 N -0.311 5.311 10 C 0.122 3.878 11 H 0.000 1.000 12 C -0.549 4.549 13 H 0.056 0.944 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.159 4.159 21 C -0.196 4.196 22 N -0.153 5.153 23 N -0.197 5.197 24 H 0.301 0.699 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.084 -13.437 11.281 17.668 hybrid contribution -0.214 0.184 -0.338 0.440 sum 1.870 -13.253 10.942 17.288 Atomic orbital electron populations 1.21753 0.92941 1.04074 1.01701 1.20416 0.96897 0.83657 1.06912 1.25175 0.94695 0.97357 0.82289 1.70303 1.23362 1.05437 1.31532 1.24204 0.96663 0.92887 0.90275 1.19541 0.92698 0.86631 0.94561 0.90844 1.22296 0.94137 1.02716 1.02530 1.60370 1.54589 1.04380 1.11784 1.18945 0.94030 0.88764 0.86096 1.00009 1.21429 1.06584 1.17440 1.09420 0.94409 1.25582 0.99843 0.95157 0.97834 1.69980 1.38390 1.23008 1.24169 0.85620 0.80351 0.77900 0.78419 1.20381 1.20287 1.20339 1.21589 0.95707 0.98873 0.99722 1.21749 0.97205 1.00924 0.99734 1.77875 1.23267 1.01726 1.12468 1.47888 1.51371 1.09406 1.11036 0.69878 0.94487 0.88284 0.92327 0.87668 0.85607 0.91496 0.91334 0.91795 0.84717 0.92953 0.90967 0.94967 0.92343 0.92737 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.89 71.98 0.71 -1.46 16 2 C -0.04 -0.60 6.56 29.85 0.20 -0.40 16 3 C 0.28 7.64 7.49 138.22 1.04 8.68 16 4 N -0.58 -21.51 11.19 -179.73 -2.01 -23.52 16 5 C 0.24 9.70 6.99 138.64 0.97 10.67 16 6 C 0.18 7.56 2.92 44.17 0.13 7.69 16 7 H 0.07 3.56 7.64 -2.38 -0.02 3.55 16 8 C -0.16 -5.39 9.13 71.98 0.66 -4.74 16 9 N -0.68 -30.92 6.03 -477.13 -2.88 -33.80 16 10 C 0.23 11.89 1.84 44.17 0.08 11.97 16 11 H -0.02 -0.98 7.35 -2.39 -0.02 -1.00 16 12 C -0.51 -29.80 8.56 25.60 0.22 -29.58 16 13 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 14 C 0.01 0.81 5.29 84.65 0.45 1.26 16 15 N -0.92 -53.31 11.27 21.45 0.24 -53.06 16 16 Si 0.95 45.99 29.54 68.60 2.03 48.01 16 17 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.12 -5.82 5.35 30.59 0.16 -5.66 16 21 C -0.14 -5.29 9.72 71.98 0.70 -4.59 16 22 N -0.32 -11.69 12.78 -51.34 -0.66 -12.35 16 23 N -0.48 -12.44 7.45 -50.71 -0.38 -12.81 16 24 H 0.45 7.55 8.96 -213.09 -1.91 5.64 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 33 H 0.33 13.87 6.20 -89.69 -0.56 13.31 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.07 3.93 5.92 -2.39 -0.01 3.92 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.87 6.48 -2.39 -0.02 1.85 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.73 321.08 0.24 -71.49 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -1.42 Total: 22.22 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.31 Total: -6.16 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -5.68 Total: -135.55 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.73 0.24 -71.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.666 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds