Wall clock time and date at job start Mon Mar 30 2020 04:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47460 * 2 1 4 4 N 1.30840 * 125.95642 * 265.30436 * 3 2 1 5 5 C 1.33241 * 109.82687 * 180.11966 * 4 3 2 6 6 C 1.50694 * 125.52699 * 179.85694 * 5 4 3 7 7 H 1.08999 * 109.47081 * 344.71349 * 6 5 4 8 8 C 1.52996 * 109.47483 * 104.71670 * 6 5 4 9 9 N 1.46907 * 109.47078 * 224.71781 * 6 5 4 10 10 C 1.46899 * 111.00147 * 159.76647 * 9 6 5 11 11 H 1.08995 * 109.47102 * 39.77239 * 10 9 6 12 12 C 1.50700 * 109.47184 * 159.77658 * 10 9 6 13 13 H 1.08003 * 119.99758 * 5.72300 * 12 10 9 14 14 C 1.37877 * 119.99871 * 185.72802 * 12 10 9 15 15 N 1.31517 * 120.00126 * 5.51564 * 14 12 10 16 16 Si 1.86800 * 119.99828 * 185.51937 * 14 12 10 17 17 H 1.48503 * 109.47040 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47066 * 299.99636 * 16 14 12 19 19 H 1.48500 * 109.47285 * 59.99909 * 16 14 12 20 20 C 1.53001 * 109.46709 * 279.77259 * 10 9 6 21 21 C 1.53000 * 109.47449 * 295.06815 * 20 10 9 22 22 N 1.30719 * 108.94639 * 359.58680 * 5 4 3 23 23 N 1.34421 * 125.96516 * 84.96622 * 3 2 1 24 24 H 0.96997 * 126.82415 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47152 * 300.00779 * 1 2 3 26 26 H 1.09003 * 109.46763 * 60.00459 * 1 2 3 27 27 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47454 * 239.98937 * 2 1 3 29 29 H 1.09003 * 109.46763 * 119.99541 * 2 1 3 30 30 H 1.09007 * 109.47284 * 179.97438 * 8 6 5 31 31 H 1.08996 * 109.46959 * 299.99845 * 8 6 5 32 32 H 1.08999 * 109.47224 * 59.99767 * 8 6 5 33 33 H 1.00895 * 111.00066 * 35.80871 * 9 6 5 34 34 H 0.96999 * 119.99752 * 355.15745 * 15 14 12 35 35 H 1.09001 * 109.47296 * 55.07292 * 20 10 9 36 36 H 1.09004 * 109.46942 * 175.06967 * 20 10 9 37 37 H 1.08995 * 109.47160 * 185.00893 * 21 20 10 38 38 H 1.08995 * 109.46892 * 305.01449 * 21 20 10 39 39 H 1.08998 * 109.46659 * 65.00816 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3703 2.1162 -1.0555 5 6 2.7709 3.3321 -0.6864 6 6 3.2407 4.4196 -1.6178 7 1 3.4628 3.9903 -2.5948 8 6 2.1440 5.4764 -1.7625 9 7 4.4528 5.0435 -1.0702 10 6 5.2047 5.7438 -2.1200 11 1 4.5091 6.2518 -2.7878 12 6 6.1249 6.7564 -1.4884 13 1 6.2175 6.8053 -0.4134 14 6 6.8485 7.6203 -2.2827 15 7 6.6556 7.6352 -3.5836 16 14 8.1028 8.7696 -1.5113 17 1 8.7413 9.5895 -2.5722 18 1 7.4238 9.6615 -0.5372 19 1 9.1410 7.9713 -0.8113 20 6 6.0302 4.7319 -2.9172 21 6 7.0894 4.1074 -2.0067 22 7 2.6848 3.4307 0.6142 23 7 2.2056 2.1969 1.0838 24 1 2.0336 1.9533 2.0068 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.4840 6.2633 -2.4359 31 1 1.2447 5.0135 -2.1688 32 1 1.9219 5.9057 -0.7855 33 1 5.0320 4.3611 -0.6046 34 1 6.0565 6.9911 -3.9925 35 1 5.3747 3.9503 -3.3013 36 1 6.5194 5.2376 -3.7498 37 1 7.7339 3.4536 -2.5943 38 1 7.6890 4.8963 -1.5527 39 1 6.5997 3.5274 -1.2244 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:55 Heat of formation + Delta-G solvation = 45.021213 kcal Electronic energy + Delta-G solvation = -18921.681755 eV Core-core repulsion = 16092.479373 eV Total energy + Delta-G solvation = -2829.202381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.24866 -39.04608 -36.01890 -34.74727 -33.58371 -32.87140 -30.89616 -30.07908 -27.60815 -25.69034 -25.37605 -24.67474 -21.91124 -21.54380 -20.62879 -19.15561 -18.58906 -17.15635 -16.67581 -16.12394 -15.68581 -15.54330 -15.22397 -15.10740 -14.78304 -14.50759 -13.88338 -13.59504 -13.47175 -13.16899 -13.08977 -12.74012 -12.67947 -12.54905 -12.47299 -12.10517 -11.96831 -11.93072 -11.84637 -11.66722 -11.15862 -11.12666 -10.67965 -10.53574 -10.31478 -9.11831 -8.47421 -6.17141 0.55508 1.57455 1.64481 1.68806 1.74238 1.83749 2.61610 2.81559 3.28528 3.36614 3.61461 3.83683 4.14228 4.24046 4.28085 4.31067 4.36701 4.39763 4.51109 4.64022 4.71745 4.78990 4.94644 4.96428 5.03099 5.11910 5.14317 5.19060 5.25206 5.26977 5.33956 5.37766 5.51037 5.96090 6.19139 6.23346 6.54029 6.61858 6.81347 7.07517 7.58001 8.89581 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039619 B = 0.004721 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.561173 B = 5929.767534 C = 5980.549260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C 0.288 3.712 4 N -0.569 5.569 5 C 0.223 3.777 6 C 0.175 3.825 7 H 0.051 0.949 8 C -0.121 4.121 9 N -0.663 5.663 10 C 0.209 3.791 11 H 0.006 0.994 12 C -0.574 4.574 13 H 0.043 0.957 14 C -0.026 4.026 15 N -0.940 5.940 16 Si 1.109 2.891 17 H -0.287 1.287 18 H -0.278 1.278 19 H -0.273 1.273 20 C -0.146 4.146 21 C -0.121 4.121 22 N -0.316 5.316 23 N -0.474 5.474 24 H 0.455 0.545 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.330 0.670 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.768 -16.889 8.526 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C 0.010 3.990 4 N -0.299 5.299 5 C -0.061 4.061 6 C 0.063 3.937 7 H 0.069 0.931 8 C -0.180 4.180 9 N -0.295 5.295 10 C 0.100 3.900 11 H 0.024 0.976 12 C -0.612 4.612 13 H 0.061 0.939 14 C -0.224 4.224 15 N -0.579 5.579 16 Si 0.933 3.067 17 H -0.212 1.212 18 H -0.204 1.204 19 H -0.198 1.198 20 C -0.186 4.186 21 C -0.179 4.179 22 N -0.145 5.145 23 N -0.194 5.194 24 H 0.303 0.697 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.861 -14.542 8.448 19.496 hybrid contribution -0.817 -1.939 0.121 2.107 sum -10.678 -16.481 8.570 21.426 Atomic orbital electron populations 1.21743 0.92243 1.04205 1.02051 1.20459 0.97436 0.83391 1.06870 1.25236 0.94307 0.97390 0.82087 1.70330 1.23438 1.04665 1.31475 1.24087 0.98235 0.93295 0.90443 1.19694 0.92506 0.89093 0.92445 0.93146 1.21646 0.96657 0.97648 1.02029 1.60784 1.07450 1.31402 1.29872 1.19187 0.90860 0.91247 0.88711 0.97583 1.21997 1.25682 1.19290 0.94251 0.93886 1.26933 1.00320 0.99950 0.95235 1.70909 1.38531 1.36775 1.11670 0.83011 0.74398 0.74731 0.74577 1.21236 1.20352 1.19808 1.22134 0.98705 0.98158 0.99648 1.21468 0.98372 0.99445 0.98581 1.78090 1.21988 1.01991 1.12453 1.47985 1.50919 1.09194 1.11309 0.69657 0.92174 0.93654 0.88504 0.87650 0.86002 0.92794 0.91241 0.92539 0.85147 0.92957 0.94569 0.93708 0.93073 0.92999 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.04 -0.49 6.56 29.85 0.20 -0.30 16 3 C 0.29 6.68 7.49 138.23 1.04 7.71 16 4 N -0.57 -18.50 11.19 -179.73 -2.01 -20.51 16 5 C 0.22 8.16 6.69 138.63 0.93 9.08 16 6 C 0.18 7.05 3.00 44.16 0.13 7.18 16 7 H 0.05 2.11 6.76 -2.39 -0.02 2.10 16 8 C -0.12 -4.57 9.33 71.98 0.67 -3.90 16 9 N -0.66 -30.20 5.99 -477.17 -2.86 -33.06 16 10 C 0.21 10.68 1.81 44.17 0.08 10.76 16 11 H 0.01 0.35 6.30 -2.39 -0.02 0.34 16 12 C -0.57 -32.30 7.18 25.60 0.18 -32.12 16 13 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 14 C -0.03 -1.50 5.29 84.65 0.45 -1.05 16 15 N -0.94 -56.83 13.21 21.45 0.28 -56.55 16 16 Si 1.11 51.20 29.91 68.60 2.05 53.25 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C -0.15 -6.94 5.44 30.59 0.17 -6.78 16 21 C -0.12 -5.20 9.38 71.98 0.68 -4.53 16 22 N -0.32 -10.92 12.78 -51.34 -0.66 -11.58 16 23 N -0.47 -11.11 7.45 -50.71 -0.38 -11.49 16 24 H 0.45 6.61 8.96 -213.10 -1.91 4.70 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 2.17 7.04 -2.38 -0.02 2.16 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.33 14.94 6.43 -89.70 -0.58 14.37 16 34 H 0.26 15.77 5.62 -92.71 -0.52 15.25 16 35 H 0.04 1.59 6.97 -2.39 -0.02 1.57 16 36 H 0.04 2.32 6.18 -2.38 -0.01 2.31 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 2.44 6.88 -2.39 -0.02 2.42 16 39 H 0.04 1.67 6.68 -2.39 -0.02 1.65 16 Total: -1.00 -71.08 314.69 0.48 -70.60 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -1.18 Total: 23.96 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.23 Total: -14.62 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -5.62 Total: -133.19 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -71.08 0.48 -70.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.618 kcal (2) G-P(sol) polarization free energy of solvation -71.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds