Wall clock time and date at job start Mon Mar 30 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 N 1.46499 * 109.47503 * 120.00427 * 2 1 3 5 5 N 1.40441 * 126.81913 * 299.97744 * 4 2 1 6 6 C 1.30720 * 106.79068 * 180.02562 * 5 4 2 7 7 N 1.33234 * 108.94479 * 0.24000 * 6 5 4 8 8 C 1.30832 * 109.83313 * 359.58957 * 7 6 5 9 9 C 1.50700 * 125.96850 * 180.12247 * 8 7 6 10 10 N 1.46903 * 109.47056 * 270.33378 * 9 8 7 11 11 C 1.46902 * 110.99751 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47221 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00040 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00155 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47230 * 89.99931 * 18 16 14 20 20 H 1.48502 * 109.47352 * 209.99987 * 18 16 14 21 21 H 1.48502 * 109.47272 * 330.00071 * 18 16 14 22 22 H 1.09007 * 109.46657 * 299.99701 * 1 2 3 23 23 H 1.08999 * 109.47267 * 59.99584 * 1 2 3 24 24 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46657 * 240.00299 * 2 1 3 26 26 H 1.09003 * 109.46648 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47445 * 300.00306 * 3 2 1 28 28 H 1.08993 * 109.46665 * 60.00436 * 3 2 1 29 29 H 1.08002 * 125.52440 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46492 * 30.33012 * 9 8 7 31 31 H 1.08999 * 109.47248 * 150.32833 * 9 8 7 32 32 H 1.00898 * 111.00217 * 56.04424 * 10 9 8 33 33 H 1.08995 * 109.47551 * 300.00499 * 11 10 9 34 34 H 1.09005 * 109.46550 * 59.99784 * 11 10 9 35 35 H 1.08993 * 109.47436 * 300.00216 * 12 11 10 36 36 H 1.09001 * 109.46724 * 60.00861 * 12 11 10 37 37 H 1.08997 * 109.47049 * 300.00941 * 13 12 11 38 38 H 1.09005 * 109.46419 * 60.00314 * 13 12 11 39 39 H 0.96993 * 119.99760 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6907 1.1961 5 7 1.7695 -0.3378 2.5324 6 6 2.3903 -1.2150 3.2766 7 7 3.0140 -2.0882 2.4869 8 6 2.7944 -1.7878 1.2325 9 6 3.3245 -2.5369 0.0372 10 7 4.6276 -1.9805 -0.3509 11 6 5.1764 -2.6882 -1.5154 12 6 6.5303 -2.0816 -1.8893 13 6 7.1022 -2.8191 -3.1017 14 6 8.4360 -2.2220 -3.4697 15 1 8.8360 -1.3991 -2.8959 16 6 9.1457 -2.7262 -4.5388 17 7 10.3100 -2.2055 -4.8596 18 14 8.4535 -4.1490 -5.5317 19 1 7.6294 -3.6192 -6.6477 20 1 9.5704 -4.9583 -6.0820 21 1 7.6103 -5.0007 -4.6548 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 2.3999 -1.2272 4.3565 30 1 3.4404 -3.5906 0.2909 31 1 2.6253 -2.4378 -0.7931 32 1 5.2748 -2.0018 0.4228 33 1 5.3050 -3.7429 -1.2722 34 1 4.4900 -2.5905 -2.3565 35 1 6.4012 -1.0271 -2.1327 36 1 7.2167 -2.1791 -1.0483 37 1 7.2313 -3.8735 -2.8579 38 1 6.4158 -2.7220 -3.9429 39 1 10.8090 -2.5600 -5.6120 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601105210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:15 Heat of formation + Delta-G solvation = 70.899100 kcal Electronic energy + Delta-G solvation = -18121.066225 eV Core-core repulsion = 15292.985993 eV Total energy + Delta-G solvation = -2828.080232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.23137 -36.80104 -36.25433 -33.80578 -32.10927 -31.12324 -30.69610 -27.59884 -27.55384 -25.04354 -23.60855 -22.14819 -21.20594 -20.42119 -19.86173 -17.47265 -16.70148 -16.02545 -15.65347 -14.96887 -14.78732 -14.57024 -14.34290 -14.02453 -13.74749 -13.42441 -12.92685 -12.64904 -12.56132 -12.40933 -12.25585 -11.79541 -11.75453 -11.66945 -11.25753 -11.00973 -10.82598 -10.07599 -10.00976 -9.86173 -9.80719 -9.73107 -9.54316 -9.19044 -8.54392 -8.48369 -6.04258 -4.02384 1.47822 2.14194 2.82592 3.29761 3.37387 3.40350 3.86688 4.17224 4.40047 4.44615 4.55223 4.59022 4.73660 4.79247 5.17759 5.24100 5.26335 5.29475 5.39726 5.43966 5.52338 5.55344 5.67709 5.80072 5.91453 6.08107 6.19547 6.35324 6.43010 6.49989 6.68879 6.86655 6.99955 7.30303 7.30816 7.43833 7.79364 8.01627 8.54429 9.01236 9.58037 11.09338 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.003646 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.865266 B = 7678.172351 C = 7906.207245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 C -0.158 4.158 4 N -0.358 5.358 5 N -0.320 5.320 6 C 0.194 3.806 7 N -0.545 5.545 8 C 0.286 3.714 9 C 0.133 3.867 10 N -0.685 5.685 11 C 0.057 3.943 12 C -0.099 4.099 13 C -0.012 4.012 14 C -0.520 4.520 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.215 0.785 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.349 0.651 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 2.220 10.659 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.216 4.216 4 N -0.149 5.149 5 N -0.148 5.148 6 C -0.109 4.109 7 N -0.273 5.273 8 C 0.009 3.991 9 C 0.001 3.999 10 N -0.318 5.318 11 C -0.071 4.071 12 C -0.137 4.137 13 C -0.050 4.050 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.062 3.085 10.479 23.727 hybrid contribution 0.079 -1.545 -0.292 1.575 sum -20.983 1.540 10.187 23.376 Atomic orbital electron populations 1.22146 0.93241 1.02869 1.03590 1.21484 0.95313 0.94681 0.83607 1.22090 1.02602 0.93739 1.03186 1.50511 1.37579 1.21040 1.05780 1.77945 1.25805 1.24102 0.86958 1.25896 0.94226 0.89700 1.01105 1.70467 1.27009 1.30128 0.99687 1.24220 0.92004 0.87922 0.94996 1.20382 0.93289 0.95687 0.90516 1.60598 1.03701 1.57228 1.10298 1.22207 0.98001 0.95303 0.91574 1.21446 0.92494 1.00402 0.99402 1.19541 0.96557 0.95830 0.93099 1.21141 1.02060 1.18317 1.14261 0.91036 1.25048 0.94708 0.96733 0.97115 1.69921 1.13513 1.42217 1.28682 0.86761 0.78773 0.83043 0.80571 1.20314 1.21427 1.19060 0.91181 0.90349 0.92206 0.87168 0.91308 0.90481 0.91452 0.76914 0.91358 0.89023 0.83213 0.95054 0.91159 0.91911 0.92826 0.96739 0.97021 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.47 37.16 0.35 -0.83 16 2 C 0.15 1.37 3.68 -67.93 -0.25 1.12 16 3 C -0.16 -1.41 9.47 37.16 0.35 -1.05 16 4 N -0.36 -4.20 3.28 -51.87 -0.17 -4.37 16 5 N -0.32 -4.05 12.60 29.29 0.37 -3.68 16 6 C 0.19 2.31 13.03 -91.81 -1.20 1.11 16 7 N -0.54 -7.37 11.19 -11.97 -0.13 -7.51 16 8 C 0.29 3.57 7.50 -155.69 -1.17 2.40 16 9 C 0.13 1.48 5.85 -4.97 -0.03 1.45 16 10 N -0.69 -8.97 6.49 -115.05 -0.75 -9.72 16 11 C 0.06 0.85 5.68 -3.82 -0.02 0.83 16 12 C -0.10 -1.89 5.41 -26.73 -0.14 -2.03 16 13 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 14 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.11 0.91 6.74 -51.93 -0.35 0.56 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.85 7.13 -51.93 -0.37 0.48 16 32 H 0.35 4.78 8.72 -39.29 -0.34 4.44 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -32.49 326.29 -8.80 -41.29 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.49 Total: 0.10 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.65 Total: -10.73 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.09 Total: -52.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.49 -8.80 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601105210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.190 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds