Wall clock time and date at job start Mon Mar 30 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 N 1.46499 * 109.47503 * 120.00427 * 2 1 3 5 5 N 1.40441 * 126.81913 * 299.97744 * 4 2 1 6 6 C 1.30720 * 106.79068 * 180.02562 * 5 4 2 7 7 N 1.33234 * 108.94479 * 0.24000 * 6 5 4 8 8 C 1.30832 * 109.83313 * 359.58957 * 7 6 5 9 9 C 1.50700 * 125.96850 * 180.12247 * 8 7 6 10 10 N 1.46903 * 109.47056 * 270.33378 * 9 8 7 11 11 C 1.46902 * 110.99751 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47221 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00040 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00155 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47230 * 89.99931 * 18 16 14 20 20 H 1.48502 * 109.47352 * 209.99987 * 18 16 14 21 21 H 1.48502 * 109.47272 * 330.00071 * 18 16 14 22 22 H 1.09007 * 109.46657 * 299.99701 * 1 2 3 23 23 H 1.08999 * 109.47267 * 59.99584 * 1 2 3 24 24 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46657 * 240.00299 * 2 1 3 26 26 H 1.09003 * 109.46648 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47445 * 300.00306 * 3 2 1 28 28 H 1.08993 * 109.46665 * 60.00436 * 3 2 1 29 29 H 1.08002 * 125.52440 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46492 * 30.33012 * 9 8 7 31 31 H 1.08999 * 109.47248 * 150.32833 * 9 8 7 32 32 H 1.00898 * 111.00217 * 56.04424 * 10 9 8 33 33 H 1.08995 * 109.47551 * 300.00499 * 11 10 9 34 34 H 1.09005 * 109.46550 * 59.99784 * 11 10 9 35 35 H 1.08993 * 109.47436 * 300.00216 * 12 11 10 36 36 H 1.09001 * 109.46724 * 60.00861 * 12 11 10 37 37 H 1.08997 * 109.47049 * 300.00941 * 13 12 11 38 38 H 1.09005 * 109.46419 * 60.00314 * 13 12 11 39 39 H 0.96993 * 119.99760 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6907 1.1961 5 7 1.7695 -0.3378 2.5324 6 6 2.3903 -1.2150 3.2766 7 7 3.0140 -2.0882 2.4869 8 6 2.7944 -1.7878 1.2325 9 6 3.3245 -2.5369 0.0372 10 7 4.6276 -1.9805 -0.3509 11 6 5.1764 -2.6882 -1.5154 12 6 6.5303 -2.0816 -1.8893 13 6 7.1022 -2.8191 -3.1017 14 6 8.4360 -2.2220 -3.4697 15 1 8.8360 -1.3991 -2.8959 16 6 9.1457 -2.7262 -4.5388 17 7 10.3100 -2.2055 -4.8596 18 14 8.4535 -4.1490 -5.5317 19 1 7.6294 -3.6192 -6.6477 20 1 9.5704 -4.9583 -6.0820 21 1 7.6103 -5.0007 -4.6548 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 2.3999 -1.2272 4.3565 30 1 3.4404 -3.5906 0.2909 31 1 2.6253 -2.4378 -0.7931 32 1 5.2748 -2.0018 0.4228 33 1 5.3050 -3.7429 -1.2722 34 1 4.4900 -2.5905 -2.3565 35 1 6.4012 -1.0271 -2.1327 36 1 7.2167 -2.1791 -1.0483 37 1 7.2313 -3.8735 -2.8579 38 1 6.4158 -2.7220 -3.9429 39 1 10.8090 -2.5600 -5.6120 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601105210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:15 Heat of formation + Delta-G solvation = 49.882878 kcal Electronic energy + Delta-G solvation = -18121.977557 eV Core-core repulsion = 15292.985993 eV Total energy + Delta-G solvation = -2828.991564 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.11802 -37.94077 -37.01801 -35.54417 -33.78493 -32.14316 -31.81085 -29.02946 -28.23280 -26.40668 -24.42628 -23.65368 -22.14641 -21.82625 -20.88525 -18.91314 -18.24215 -16.96667 -16.74516 -16.31782 -15.89743 -15.62223 -15.33957 -15.19027 -15.05913 -14.64874 -14.14335 -13.81166 -13.57847 -13.36461 -13.34141 -13.17375 -12.87263 -12.52929 -12.49783 -12.44644 -11.97904 -11.76722 -11.58008 -11.44455 -11.26920 -11.00237 -10.73666 -10.73522 -10.56477 -9.50600 -8.26790 -6.31442 0.57622 1.34535 1.39058 1.41657 1.53525 1.91015 2.39380 2.97506 3.08870 3.40217 3.44993 3.76858 3.91970 3.98349 4.09331 4.24453 4.32243 4.44166 4.53387 4.64982 4.70184 4.71411 4.77960 4.86948 4.92433 4.99172 5.13644 5.15848 5.19965 5.35441 5.50174 5.53536 5.64321 5.69220 5.83263 5.96118 6.22294 6.32790 6.77692 7.11501 7.33327 8.90450 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.003646 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.865266 B = 7678.172351 C = 7906.207245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 C -0.153 4.153 4 N -0.357 5.357 5 N -0.339 5.339 6 C 0.187 3.813 7 N -0.570 5.570 8 C 0.276 3.724 9 C 0.138 3.862 10 N -0.689 5.689 11 C 0.072 3.928 12 C -0.092 4.092 13 C -0.010 4.010 14 C -0.535 4.535 15 H 0.026 0.974 16 C -0.002 4.002 17 N -0.956 5.956 18 Si 0.957 3.043 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.241 1.241 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.059 0.941 25 H 0.123 0.877 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.242 0.758 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.344 0.656 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.025 0.975 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.175 0.822 9.955 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 C -0.211 4.211 4 N -0.149 5.149 5 N -0.167 5.167 6 C -0.115 4.115 7 N -0.299 5.299 8 C -0.001 4.001 9 C 0.006 3.994 10 N -0.321 5.321 11 C -0.056 4.056 12 C -0.130 4.130 13 C -0.048 4.048 14 C -0.573 4.573 15 H 0.044 0.956 16 C -0.198 4.198 17 N -0.597 5.597 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.165 1.165 22 H 0.076 0.924 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.141 0.859 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.258 0.742 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.600 1.703 9.787 25.606 hybrid contribution 0.909 -0.990 -0.006 1.344 sum -22.691 0.713 9.781 24.719 Atomic orbital electron populations 1.22097 0.91787 1.03008 1.04140 1.21795 0.96489 0.94521 0.83077 1.22049 1.01133 0.94012 1.03868 1.50723 1.37212 1.20867 1.06075 1.77901 1.26487 1.24726 0.87614 1.26513 0.93548 0.89067 1.02389 1.70456 1.27868 1.31131 1.00469 1.24442 0.92179 0.88285 0.95171 1.20461 0.92394 0.95636 0.90869 1.60515 1.04407 1.57389 1.09776 1.21943 0.95644 0.95288 0.92752 1.21262 0.94880 0.99502 0.97372 1.19490 0.94019 0.96095 0.95168 1.21550 1.04539 1.17345 1.13824 0.95577 1.26121 0.94918 1.00150 0.98569 1.70093 1.15430 1.44419 1.29742 0.85567 0.78348 0.79065 0.79087 1.18913 1.21354 1.16471 0.92445 0.87940 0.92235 0.85933 0.93415 0.88117 0.92457 0.74192 0.90665 0.86656 0.83805 0.94128 0.89502 0.93198 0.94016 0.96007 0.95673 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.47 71.98 0.68 -1.23 16 2 C 0.14 2.31 3.68 44.99 0.17 2.47 16 3 C -0.15 -2.52 9.47 71.98 0.68 -1.84 16 4 N -0.36 -7.92 3.28 -318.02 -1.04 -8.96 16 5 N -0.34 -8.30 12.60 -61.24 -0.77 -9.07 16 6 C 0.19 4.29 13.03 180.77 2.36 6.65 16 7 N -0.57 -14.84 11.19 -191.78 -2.15 -16.99 16 8 C 0.28 6.48 7.50 138.23 1.04 7.52 16 9 C 0.14 2.70 5.85 85.56 0.50 3.20 16 10 N -0.69 -16.65 6.49 -517.92 -3.36 -20.02 16 11 C 0.07 1.93 5.68 86.30 0.49 2.42 16 12 C -0.09 -3.42 5.41 30.59 0.17 -3.25 16 13 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 14 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 15 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 16 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 17 N -0.96 -60.54 13.96 21.45 0.30 -60.24 16 18 Si 0.96 43.52 27.47 68.60 1.88 45.41 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.12 1.68 6.74 -2.38 -0.02 1.66 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.24 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.70 7.13 -2.39 -0.02 1.69 16 32 H 0.34 9.03 8.72 -89.70 -0.78 8.25 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 38 H 0.02 1.07 7.57 -2.38 -0.02 1.05 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -71.66 326.29 1.95 -69.70 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.18 Total: 14.86 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 6.91 Total: -14.69 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -7.02 Total: -115.28 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Total: -71.66 1.95 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601105210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.587 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds