Wall clock time and date at job start Mon Mar 30 2020 04:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30522 * 126.34611 * 2 1 4 4 N 1.28601 * 109.67243 * 180.02562 * 3 2 1 5 5 C 1.30523 * 109.67342 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.34874 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47464 * 95.39883 * 6 5 4 8 8 C 1.46901 * 110.99710 * 284.82743 * 7 6 5 9 9 C 1.50694 * 109.46982 * 169.99990 * 8 7 6 10 10 H 1.08002 * 120.00499 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00261 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00522 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46744 * 89.99995 * 13 11 9 15 15 H 1.48497 * 109.47105 * 210.00198 * 13 11 9 16 16 H 1.48500 * 109.46927 * 330.00002 * 13 11 9 17 17 C 1.46902 * 111.00188 * 160.87897 * 7 6 5 18 18 C 1.53004 * 109.46782 * 293.55694 * 17 7 6 19 19 C 1.53000 * 109.47143 * 53.55356 * 17 7 6 20 20 N 1.35495 * 126.34646 * 180.27890 * 2 1 3 21 21 C 1.46509 * 126.98004 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.47607 * 89.97177 * 1 2 3 23 23 H 1.09009 * 109.47149 * 209.96866 * 1 2 3 24 24 H 1.09000 * 109.46976 * 329.96959 * 1 2 3 25 25 H 1.09002 * 109.46685 * 335.39628 * 6 5 4 26 26 H 1.09006 * 109.47289 * 215.39894 * 6 5 4 27 27 H 1.09002 * 109.47227 * 289.99789 * 8 7 6 28 28 H 1.08999 * 109.47323 * 50.00069 * 8 7 6 29 29 H 0.97003 * 119.99952 * 179.97438 * 12 11 9 30 30 H 1.08992 * 109.47182 * 173.56038 * 17 7 6 31 31 H 1.09003 * 109.47214 * 66.23520 * 18 17 7 32 32 H 1.08994 * 109.47234 * 186.23864 * 18 17 7 33 33 H 1.09006 * 109.46986 * 306.23994 * 18 17 7 34 34 H 1.08997 * 109.47057 * 65.23340 * 19 17 7 35 35 H 1.08996 * 109.46867 * 185.22978 * 19 17 7 36 36 H 1.08998 * 109.47450 * 305.22929 * 19 17 7 37 37 H 1.08996 * 109.46819 * 265.13054 * 21 20 2 38 38 H 1.09004 * 109.46877 * 25.13463 * 21 20 2 39 39 H 1.09004 * 109.46731 * 145.13428 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6823 -0.0005 5 6 3.5807 -0.6211 -0.0015 6 6 4.8396 -1.4496 -0.0029 7 7 5.1780 -1.8286 1.3754 8 6 5.7425 -0.6893 2.1111 9 6 5.8480 -1.0381 3.5733 10 1 5.5273 -2.0088 3.9215 11 6 6.3529 -0.1175 4.4670 12 7 6.7430 1.0648 4.0432 13 14 6.4830 -0.5496 6.2798 14 1 7.8073 -1.1656 6.5479 15 1 6.3365 0.6834 7.0942 16 1 5.4085 -1.5100 6.6380 17 6 6.0959 -2.9753 1.3959 18 6 5.3782 -4.2127 0.8530 19 6 7.3146 -2.6687 0.5231 20 7 2.3100 -1.0913 -0.0053 21 6 1.8896 -2.4948 -0.0116 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8903 0.5134 24 1 -0.3633 0.8897 0.5143 25 1 5.6564 -0.8684 -0.4309 26 1 4.6822 -2.3487 -0.5987 27 1 6.7337 -0.4594 1.7201 28 1 5.0941 0.1785 1.9905 29 1 7.0979 1.7126 4.6720 30 1 6.4199 -3.1631 2.4194 31 1 5.1521 -4.0674 -0.2034 32 1 6.0200 -5.0858 0.9705 33 1 4.4509 -4.3664 1.4051 34 1 7.8778 -1.8452 0.9621 35 1 7.9500 -3.5522 0.4632 36 1 6.9841 -2.3902 -0.4775 37 1 1.8693 -2.8725 1.0106 38 1 0.8939 -2.5739 -0.4482 39 1 2.5930 -3.0820 -0.6021 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685984962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:43 Heat of formation + Delta-G solvation = 79.704278 kcal Electronic energy + Delta-G solvation = -19477.447947 eV Core-core repulsion = 16649.749537 eV Total energy + Delta-G solvation = -2827.698411 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65580 -37.84843 -34.73825 -32.74954 -32.62419 -30.79748 -28.62470 -27.25544 -26.78069 -26.58649 -24.66698 -22.12059 -20.94805 -20.51378 -18.80934 -16.63928 -16.20230 -16.09437 -15.41554 -14.68415 -14.30652 -14.17198 -13.59232 -13.41751 -13.23022 -13.02169 -12.67534 -12.59589 -12.48692 -12.26495 -11.99918 -11.53286 -11.39877 -11.06292 -10.90631 -10.76388 -10.69383 -10.46170 -10.09720 -9.84723 -9.75568 -9.74321 -9.13047 -8.53428 -8.38046 -7.33620 -5.95059 -3.97130 2.19100 2.83623 3.33546 3.35307 3.40419 3.43589 4.45535 4.57781 4.69889 4.74760 5.01491 5.09541 5.20981 5.32838 5.39862 5.41480 5.46945 5.48533 5.65255 5.75228 5.84050 5.91006 5.93661 6.15249 6.16858 6.20220 6.34475 6.43267 6.62181 6.70590 6.80549 7.23914 7.37991 7.45106 7.80812 8.15975 8.19419 8.54100 9.09188 9.26268 9.65754 11.15357 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.007592 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.327410 B = 3687.415352 C = 4491.254335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.153 3.847 3 N -0.296 5.296 4 N -0.286 5.286 5 C 0.207 3.793 6 C 0.133 3.867 7 N -0.527 5.527 8 C 0.189 3.811 9 C -0.510 4.510 10 H 0.060 0.940 11 C 0.057 3.943 12 N -0.891 5.891 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.081 3.919 18 C -0.143 4.143 19 C -0.183 4.183 20 N -0.467 5.467 21 C 0.080 3.920 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.079 0.921 27 H -0.002 1.002 28 H 0.042 0.958 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -10.677 -9.820 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.114 4.114 3 N -0.137 5.137 4 N -0.126 5.126 5 C -0.061 4.061 6 C 0.002 3.998 7 N -0.252 5.252 8 C 0.064 3.936 9 C -0.548 4.548 10 H 0.078 0.922 11 C -0.145 4.145 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.027 4.027 18 C -0.200 4.200 19 C -0.242 4.242 20 N -0.159 5.159 21 C -0.064 4.064 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.016 0.984 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.002 -9.203 -9.517 16.009 hybrid contribution 0.481 -1.229 0.738 1.512 sum -8.520 -10.432 -8.779 16.077 Atomic orbital electron populations 1.20100 0.84417 1.04172 1.03195 1.24662 0.96725 0.83355 1.06660 1.74203 0.96786 1.24081 1.18643 1.74302 1.11484 1.08317 1.18473 1.24771 0.86578 0.92208 1.02522 1.20360 0.89522 0.95869 0.94052 1.62359 1.44424 1.09303 1.09115 1.19855 0.93620 0.87587 0.92523 1.21088 1.41354 1.00465 0.91923 0.92176 1.24974 0.95746 0.94976 0.98788 1.69982 1.42667 1.05654 1.34704 0.86568 0.78227 0.77772 0.85234 1.20766 1.21277 1.19978 1.21621 0.90182 0.90221 1.00692 1.21915 1.00866 0.97382 0.99867 1.22460 0.99850 1.02017 0.99827 1.45848 1.06784 1.08335 1.54921 1.21984 1.01400 0.78554 1.04440 0.90305 0.90849 0.89007 0.91737 0.90291 0.98423 0.93996 0.92947 0.88454 0.93802 0.92919 0.92305 0.91599 0.93097 0.93461 0.89670 0.89805 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.01 36.00 0.36 -0.27 16 2 C 0.15 2.53 8.03 -154.99 -1.24 1.28 16 3 N -0.30 -6.27 12.21 32.79 0.40 -5.87 16 4 N -0.29 -6.57 11.77 32.80 0.39 -6.18 16 5 C 0.21 4.05 6.88 -154.98 -1.07 2.98 16 6 C 0.13 2.38 3.89 -4.98 -0.02 2.36 16 7 N -0.53 -10.83 4.37 -229.52 -1.00 -11.83 16 8 C 0.19 4.98 4.43 -4.98 -0.02 4.96 16 9 C -0.51 -14.42 8.36 -34.44 -0.29 -14.71 16 10 H 0.06 1.66 7.18 -52.49 -0.38 1.29 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.08 1.44 2.78 -67.71 -0.19 1.25 16 18 C -0.14 -1.90 9.03 37.16 0.34 -1.56 16 19 C -0.18 -2.99 8.56 37.16 0.32 -2.67 16 20 N -0.47 -7.43 3.15 -117.99 -0.37 -7.80 16 21 C 0.08 0.82 10.74 59.85 0.64 1.47 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.60 7.75 -51.92 -0.40 0.20 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.23 7.18 -51.93 -0.37 0.86 16 26 H 0.08 1.13 5.34 -51.93 -0.28 0.86 16 27 H 0.00 -0.06 6.52 -51.93 -0.34 -0.39 16 28 H 0.04 1.26 7.05 -51.93 -0.37 0.90 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.96 6.64 -51.93 -0.34 1.62 16 31 H 0.04 0.51 6.52 -51.93 -0.34 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.26 6.81 -51.93 -0.35 0.91 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.71 6.46 -51.93 -0.34 0.37 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.59 7.58 -51.93 -0.39 0.19 16 39 H 0.09 0.76 7.46 -51.93 -0.39 0.37 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -35.21 313.48 -7.38 -42.58 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.96 Total: -2.63 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.27 Total: -3.35 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.15 Total: -58.38 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.21 -7.38 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.289 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds