Wall clock time and date at job start Mon Mar 30 2020 03:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33240 * 125.52684 * 2 1 4 4 C 1.30831 * 109.83030 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.96250 * 179.97438 * 4 3 2 6 6 N 1.34427 * 108.07615 * 0.02562 * 4 3 2 7 7 C 1.46502 * 126.82416 * 179.73570 * 6 4 3 8 8 C 1.52999 * 109.47170 * 90.00066 * 7 6 4 9 9 N 1.46500 * 109.47336 * 180.02562 * 8 7 6 10 10 C 1.36942 * 119.99703 * 270.00184 * 9 8 7 11 11 H 1.07991 * 120.00310 * 141.91228 * 10 9 8 12 12 C 1.38813 * 119.99515 * 321.90540 * 10 9 8 13 13 N 1.31621 * 120.00373 * 338.46104 * 12 10 9 14 14 Si 1.86800 * 119.99771 * 158.46832 * 12 10 9 15 15 H 1.48496 * 109.47330 * 59.99464 * 14 12 10 16 16 H 1.48502 * 109.47187 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46916 * 299.99645 * 14 12 10 18 18 C 1.46497 * 120.00086 * 89.99627 * 9 8 7 19 19 C 1.52995 * 109.46845 * 122.24786 * 18 9 8 20 20 C 1.53003 * 109.46889 * 242.24628 * 18 9 8 21 21 N 1.30707 * 125.52402 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47101 * 90.02106 * 1 2 3 23 23 H 1.08999 * 109.47090 * 210.02290 * 1 2 3 24 24 H 1.08999 * 109.47064 * 330.02375 * 1 2 3 25 25 H 1.08991 * 109.47183 * 270.04278 * 5 4 3 26 26 H 1.08994 * 109.47066 * 30.04627 * 5 4 3 27 27 H 1.08998 * 109.46884 * 150.04236 * 5 4 3 28 28 H 1.09004 * 109.47132 * 209.99506 * 7 6 4 29 29 H 1.08999 * 109.47099 * 329.99815 * 7 6 4 30 30 H 1.09005 * 109.47125 * 299.99947 * 8 7 6 31 31 H 1.08999 * 109.47314 * 59.99881 * 8 7 6 32 32 H 0.97000 * 120.00204 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47086 * 2.24245 * 18 9 8 34 34 H 1.08999 * 109.47798 * 65.40591 * 19 18 9 35 35 H 1.09007 * 109.46897 * 185.40450 * 19 18 9 36 36 H 1.09001 * 109.47193 * 305.39715 * 19 18 9 37 37 H 1.08991 * 109.47165 * 60.43723 * 20 18 9 38 38 H 1.09000 * 109.46736 * 180.43922 * 20 18 9 39 39 H 1.09002 * 109.47164 * 300.43846 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7304 -0.0006 5 6 4.7228 1.6653 -0.0013 6 7 3.5966 -0.6127 -0.0015 7 6 4.8048 -1.4413 -0.0078 8 6 5.2323 -1.7305 1.4325 9 7 6.4408 -2.5586 1.4263 10 6 6.3352 -3.9240 1.4259 11 1 7.0247 -4.5188 0.8454 12 6 5.3419 -4.5434 2.1719 13 7 4.7863 -3.9097 3.1830 14 14 4.7937 -6.2764 1.7410 15 1 5.9504 -7.2017 1.8451 16 1 3.7292 -6.7074 2.6825 17 1 4.2661 -6.2978 0.3531 18 6 7.7622 -1.9261 1.4203 19 6 8.5603 -2.4009 2.6362 20 6 8.5061 -2.3111 0.1400 21 7 2.2665 -1.0638 -0.0005 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 5.0068 1.8911 -1.0290 26 1 4.4562 2.5884 0.5132 27 1 5.5603 1.1924 0.5116 28 1 4.5985 -2.3806 -0.5210 29 1 5.6053 -0.9126 -0.5252 30 1 5.4386 -0.7913 1.9459 31 1 4.4319 -2.2592 1.9500 32 1 4.0919 -4.3424 3.7041 33 1 7.6468 -0.8431 1.4617 34 1 8.7584 -3.4690 2.5465 35 1 9.5049 -1.8590 2.6850 36 1 7.9863 -2.2127 3.5436 37 1 7.9414 -1.9662 -0.7260 38 1 9.4923 -1.8468 0.1392 39 1 8.6147 -3.3948 0.0947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:41 Heat of formation + Delta-G solvation = 93.546716 kcal Electronic energy + Delta-G solvation = -19257.511017 eV Core-core repulsion = 16430.412859 eV Total energy + Delta-G solvation = -2827.098157 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64808 -36.88095 -34.28926 -32.56622 -32.22035 -30.58457 -29.21113 -28.09053 -26.35954 -26.26738 -24.21603 -21.90562 -20.25315 -19.96020 -19.63123 -16.60535 -15.99113 -15.47224 -15.05450 -14.31104 -14.05445 -13.97341 -13.49491 -13.25321 -12.86381 -12.83370 -12.57406 -12.47982 -12.34415 -12.03958 -11.68883 -11.50649 -11.41359 -11.16754 -11.00466 -10.77587 -10.59919 -10.36204 -10.06715 -9.85012 -9.72765 -9.51540 -9.18765 -8.85754 -8.55247 -6.69444 -5.88237 -3.47894 2.09003 2.84017 3.26265 3.33807 3.40866 3.42474 4.35870 4.41612 4.87450 5.02709 5.25929 5.33188 5.49431 5.52458 5.55341 5.72762 5.82543 5.86746 5.93706 5.95934 6.08496 6.17417 6.20144 6.24268 6.34309 6.56840 6.60850 6.68451 6.71796 6.90406 6.94114 7.09133 7.23802 7.32534 7.54351 7.76914 8.42569 8.57819 9.07183 9.70123 10.26968 11.12403 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.007786 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.380736 B = 3595.531242 C = 4756.192546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.200 3.800 3 N -0.554 5.554 4 C 0.263 3.737 5 C -0.073 4.073 6 N -0.352 5.352 7 C 0.102 3.898 8 C 0.140 3.860 9 N -0.572 5.572 10 C -0.268 4.268 11 H 0.064 0.936 12 C 0.020 3.980 13 N -0.880 5.880 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.161 3.839 19 C -0.145 4.145 20 C -0.155 4.155 21 N -0.311 5.311 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.103 0.897 32 H 0.257 0.743 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 8.574 -5.600 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 N -0.285 5.285 4 C -0.013 4.013 5 C -0.132 4.132 6 N -0.142 5.142 7 C -0.022 4.022 8 C 0.011 3.989 9 N -0.292 5.292 10 C -0.397 4.397 11 H 0.081 0.919 12 C -0.182 4.182 13 N -0.521 5.521 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.207 1.207 18 C 0.054 3.946 19 C -0.203 4.203 20 C -0.215 4.215 21 N -0.141 5.141 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.118 8.037 -5.440 9.706 hybrid contribution -0.056 -1.025 -0.186 1.043 sum -0.174 7.013 -5.626 8.992 Atomic orbital electron populations 1.19972 0.84606 1.03532 1.02988 1.24140 0.97996 0.86127 0.99974 1.70228 0.99916 1.31227 1.27100 1.24173 0.95016 0.84405 0.97696 1.20306 0.91849 0.97270 1.03794 1.50608 1.06200 1.05403 1.52016 1.23135 0.80019 0.94464 1.04606 1.21207 0.93311 0.94211 0.90152 1.43762 0.98110 1.02539 1.84796 1.18859 1.16183 0.81605 1.23054 0.91887 1.25218 1.00937 0.97624 0.94442 1.69972 1.27549 1.38188 1.16358 0.86496 0.78321 0.84590 0.78134 1.20670 1.21576 1.20718 1.20480 0.86686 0.94597 0.92812 1.22029 0.97569 1.01328 0.99421 1.22200 0.98414 1.01945 0.98892 1.78067 0.87242 1.22637 1.26154 0.90541 0.90343 0.90125 0.89722 0.88974 0.89830 0.88783 0.90340 0.95353 0.87955 0.93325 0.93637 0.92598 0.95069 0.92969 0.93920 0.94273 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.69 10.51 36.01 0.38 -0.31 16 2 C 0.20 3.69 8.14 -156.86 -1.28 2.42 16 3 N -0.55 -10.23 11.19 -8.16 -0.09 -10.32 16 4 C 0.26 4.58 7.98 -155.70 -1.24 3.34 16 5 C -0.07 -0.89 10.00 36.01 0.36 -0.53 16 6 N -0.35 -6.89 3.64 -58.34 -0.21 -7.10 16 7 C 0.10 1.97 6.45 -4.04 -0.03 1.94 16 8 C 0.14 3.10 5.59 -4.04 -0.02 3.08 16 9 N -0.57 -13.00 2.36 -165.67 -0.39 -13.39 16 10 C -0.27 -6.81 8.23 -15.06 -0.12 -6.94 16 11 H 0.06 1.61 6.95 -52.49 -0.36 1.24 16 12 C 0.02 0.52 4.94 -17.43 -0.09 0.44 16 13 N -0.88 -24.83 11.52 55.49 0.64 -24.20 16 14 Si 0.90 21.36 29.61 -169.99 -5.03 16.33 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.16 3.08 3.36 -67.93 -0.23 2.85 16 19 C -0.14 -2.77 9.03 37.15 0.34 -2.44 16 20 C -0.16 -2.62 9.20 37.16 0.34 -2.27 16 21 N -0.31 -6.54 12.70 32.42 0.41 -6.12 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 0.97 7.77 -51.93 -0.40 0.57 16 28 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 29 H 0.08 1.30 7.73 -51.93 -0.40 0.90 16 30 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.10 2.74 5.56 -51.93 -0.29 2.45 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.05 0.80 7.78 -51.93 -0.40 0.40 16 34 H 0.05 1.15 7.80 -51.93 -0.40 0.74 16 35 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.03 7.06 -51.93 -0.37 0.66 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.46 324.06 -7.79 -38.25 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.41 Total: 0.10 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.59 Total: 1.57 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.36 Total: -61.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.46 -7.79 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.795 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds