Wall clock time and date at job start Mon Mar 30 2020 03:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.52997 * 109.47254 * 66.04707 * 3 2 1 5 5 O 1.42904 * 109.47396 * 64.99580 * 4 3 2 6 6 C 1.42896 * 114.00313 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46851 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00616 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99887 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99815 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00265 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47253 * 119.99229 * 11 9 7 14 14 H 1.48498 * 109.46902 * 239.99613 * 11 9 7 15 15 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 16 16 C 1.47201 * 110.01390 * 183.24976 * 15 2 1 17 17 N 3.40325 * 156.89796 * 230.07191 * 2 1 3 18 18 C 1.54267 * 110.03425 * 61.86296 * 15 2 1 19 19 C 1.54963 * 104.15806 * 217.13428 * 18 15 2 20 20 C 1.54889 * 102.77901 * 37.88582 * 19 18 15 21 21 C 1.53874 * 110.03577 * 304.64273 * 15 2 1 22 22 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 23 23 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 25 25 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 26 26 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 27 27 H 1.09001 * 109.47630 * 184.99901 * 4 3 2 28 28 H 1.09004 * 109.47346 * 305.00031 * 4 3 2 29 29 H 1.08999 * 109.46799 * 300.00326 * 6 5 4 30 30 H 1.08998 * 109.47187 * 59.99969 * 6 5 4 31 31 H 0.97003 * 120.00101 * 180.02562 * 10 9 7 32 32 H 1.08999 * 110.48425 * 335.77846 * 18 15 2 33 33 H 1.08996 * 110.49013 * 98.42561 * 18 15 2 34 34 H 1.08999 * 110.72148 * 279.56933 * 19 18 15 35 35 H 1.09004 * 110.76433 * 156.21786 * 19 18 15 36 36 H 1.09002 * 110.48833 * 203.40225 * 20 19 18 37 37 H 1.09007 * 110.48347 * 80.76408 * 20 19 18 38 38 H 1.09007 * 110.03390 * 238.57383 * 21 15 2 39 39 H 1.09001 * 110.03093 * 359.97438 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 8 2.2956 1.3976 2.3979 6 6 2.0213 1.9628 3.6814 7 6 2.7696 1.1934 4.7393 8 1 3.3920 0.3563 4.4596 9 6 2.6589 1.5576 6.0645 10 7 1.9006 2.5766 6.4052 11 14 3.5858 0.6035 7.3760 12 1 4.3620 -0.4896 6.7372 13 1 4.5130 1.5173 8.0905 14 1 2.6190 0.0240 8.3427 15 6 1.9955 -0.7659 -1.1376 16 6 3.4652 -0.8173 -1.0735 17 7 4.5994 -0.8571 -1.0240 18 6 1.5467 -0.1182 -2.4638 19 6 1.2737 -1.3222 -3.4004 20 6 0.6361 -2.3615 -2.4452 21 6 1.4172 -2.1918 -1.1258 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 1.9438 3.1012 1.2831 28 1 0.5532 2.0058 1.4691 29 1 2.3415 3.0046 3.6955 30 1 0.9512 1.9088 3.8810 31 1 1.8229 2.8331 7.3375 32 1 0.6370 0.4636 -2.3155 33 1 2.3402 0.5094 -2.8695 34 1 2.2047 -1.7032 -3.8201 35 1 0.5765 -1.0460 -4.1915 36 1 0.7652 -3.3701 -2.8380 37 1 -0.4209 -2.1425 -2.2938 38 1 2.2249 -2.9220 -1.0735 39 1 0.7462 -2.3156 -0.2758 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:59 Heat of formation + Delta-G solvation = -13.418742 kcal Electronic energy + Delta-G solvation = -18840.799806 eV Core-core repulsion = 15976.770527 eV Total energy + Delta-G solvation = -2864.029279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24339 -36.88444 -35.84178 -34.96532 -32.63511 -29.88315 -29.20158 -28.39581 -26.86407 -24.99326 -22.31001 -21.92357 -20.88055 -20.67150 -17.66196 -16.60077 -16.31336 -15.61423 -15.26289 -14.88793 -14.57551 -14.35061 -13.91481 -13.80412 -13.49412 -13.03498 -12.81002 -12.56919 -12.21045 -12.04416 -11.81598 -11.66260 -11.45461 -11.38382 -11.31787 -11.21017 -10.99876 -10.75542 -10.74910 -10.67225 -10.39216 -9.95810 -9.02595 -8.76310 -8.26687 -8.08984 -6.06244 -4.06690 2.70872 2.82617 3.32880 3.39227 3.47067 3.76681 3.96991 4.30702 4.34774 4.39739 4.75276 4.82543 5.05488 5.12224 5.14557 5.30553 5.31464 5.33838 5.42962 5.49588 5.56348 5.60716 5.65087 5.75145 5.78581 5.85874 5.97787 6.01002 6.07052 6.15927 6.28252 6.98170 7.02423 7.15342 7.48128 7.64725 7.86431 8.21874 8.66284 9.08503 9.58162 11.05500 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.004572 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.258989 B = 6123.396223 C = 6342.538606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.511 5.511 3 C 0.055 3.945 4 C 0.067 3.933 5 O -0.380 6.380 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.906 3.094 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.206 3.794 16 C 0.227 3.773 17 N -0.425 5.425 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.115 4.115 22 H 0.031 0.969 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.002 0.998 30 H 0.004 0.996 31 H 0.262 0.738 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -6.157 -19.680 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.235 5.235 3 C -0.073 4.073 4 C -0.011 4.011 5 O -0.299 6.299 6 C 0.120 3.880 7 C -0.547 4.547 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.112 3.888 16 C -0.092 4.092 17 N -0.100 5.100 18 C -0.192 4.192 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.154 4.154 22 H 0.049 0.951 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.956 -6.501 -19.003 20.686 hybrid contribution -0.379 0.417 0.230 0.609 sum -5.335 -6.084 -18.772 20.442 Atomic orbital electron populations 1.22595 0.86100 1.02846 1.01396 1.62104 1.08501 1.14223 1.38633 1.22267 1.00818 0.87605 0.96602 1.22243 0.96316 0.94627 0.87916 1.87968 1.69625 1.56813 1.15532 1.20180 0.95582 0.93519 0.78729 1.21109 1.27973 1.15239 0.90413 0.91526 1.24935 0.95702 0.95406 0.98470 1.69973 1.39179 1.27110 1.17769 0.86310 0.79507 0.79849 0.81038 1.19469 1.20903 1.20857 1.19131 0.82013 0.96725 0.90889 1.28618 0.94338 0.93255 0.92971 1.81194 1.12667 1.08187 1.07929 1.23122 1.02573 0.98869 0.94591 1.22485 1.01015 0.95045 0.97479 1.22403 0.99692 0.99497 0.94554 1.22342 1.00652 0.92915 0.99450 0.95114 0.90504 0.89943 0.90481 0.93445 0.94159 0.94165 0.98036 0.97832 0.92816 0.89220 0.90857 0.91285 0.90926 0.90991 0.90931 0.90659 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.65 60.07 0.52 0.71 16 2 N -0.51 -7.09 4.51 -229.11 -1.03 -8.13 16 3 C 0.05 0.81 4.73 -3.83 -0.02 0.79 16 4 C 0.07 1.23 5.99 37.16 0.22 1.45 16 5 O -0.38 -9.39 10.27 -35.23 -0.36 -9.75 16 6 C 0.19 5.43 5.69 36.00 0.20 5.63 16 7 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 11 Si 0.91 22.42 29.54 -169.99 -5.02 17.40 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 C 0.21 2.39 0.55 -133.27 -0.07 2.32 16 16 C 0.23 3.41 12.15 -20.76 -0.25 3.16 16 17 N -0.42 -7.46 18.54 42.15 0.78 -6.68 16 18 C -0.15 -1.31 4.74 -25.03 -0.12 -1.43 16 19 C -0.12 -0.85 6.91 -24.70 -0.17 -1.02 16 20 C -0.12 -0.84 6.83 -25.08 -0.17 -1.01 16 21 C -0.11 -1.09 5.53 -25.62 -0.14 -1.24 16 22 H 0.03 0.26 6.18 -51.93 -0.32 -0.06 16 23 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 24 H 0.08 1.03 6.37 -51.93 -0.33 0.70 16 25 H 0.08 1.29 6.78 -51.93 -0.35 0.94 16 26 H 0.05 0.55 7.37 -51.93 -0.38 0.17 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 0.69 5.65 -51.93 -0.29 0.40 16 33 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.75 7.66 -51.93 -0.40 0.36 16 39 H 0.10 0.93 6.05 -51.93 -0.31 0.61 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -33.91 313.41 -6.54 -40.44 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -5.94 Total: -6.60 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.42 Total: -4.81 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.48 Total: -41.40 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.36 Total: -9.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.91 -6.54 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.025 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds