Wall clock time and date at job start Mon Mar 30 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48497 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47039 * 299.99523 * 3 2 1 6 6 H 1.48505 * 109.47335 * 59.99434 * 3 2 1 7 7 C 1.37874 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00440 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47208 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47307 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46956 * 180.02562 * 12 11 10 14 14 C 1.47817 * 110.99850 * 190.00128 * 13 12 11 15 15 C 1.53432 * 106.54674 * 237.14583 * 14 13 12 16 16 H 1.09004 * 109.15522 * 92.45323 * 15 14 13 17 17 C 1.51153 * 112.71625 * 213.32184 * 15 14 13 18 18 C 1.52972 * 111.10965 * 67.36636 * 17 15 14 19 19 C 1.51791 * 108.21875 * 56.61252 * 18 17 15 20 20 N 1.46438 * 109.35691 * 297.54854 * 19 18 17 21 21 C 1.46806 * 112.85645 * 63.06485 * 20 19 18 22 22 H 1.09006 * 112.37144 * 72.51290 * 21 20 19 23 23 C 1.49939 * 110.94116 * 69.08055 * 13 12 11 24 24 H 0.97010 * 120.00078 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46716 * 59.99529 * 9 7 2 26 26 H 1.08999 * 109.46867 * 300.00465 * 9 7 2 27 27 H 1.09001 * 109.47443 * 60.00207 * 10 9 7 28 28 H 1.09011 * 109.47475 * 299.99883 * 10 9 7 29 29 H 1.09000 * 109.47212 * 60.00128 * 11 10 9 30 30 H 1.08996 * 109.47146 * 300.00236 * 11 10 9 31 31 H 1.09000 * 109.46849 * 59.99944 * 12 11 10 32 32 H 1.08999 * 109.47053 * 299.99725 * 12 11 10 33 33 H 1.08999 * 110.04218 * 117.87444 * 14 13 12 34 34 H 1.08998 * 110.08021 * 356.44046 * 14 13 12 35 35 H 1.09006 * 109.14633 * 187.78232 * 17 15 14 36 36 H 1.08994 * 109.15609 * 306.94303 * 17 15 14 37 37 H 1.08990 * 109.75131 * 176.58561 * 18 17 15 38 38 H 1.09002 * 109.74547 * 297.32155 * 18 17 15 39 39 H 1.09008 * 109.81025 * 177.21429 * 19 18 17 40 40 H 1.09000 * 108.60986 * 57.15544 * 19 18 17 41 41 H 1.00895 * 111.00205 * 297.73171 * 20 19 18 42 42 H 1.08996 * 110.50083 * 28.55016 * 23 13 12 43 43 H 1.09000 * 111.23456 * 265.44606 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4743 -6.1500 -0.0008 13 7 1.7397 -7.4222 -0.0020 14 6 2.6517 -8.5607 0.2370 15 6 2.4912 -9.5078 -0.9594 16 1 3.2351 -9.2578 -1.7158 17 6 2.6565 -10.9614 -0.5794 18 6 1.5119 -11.4291 0.3213 19 6 0.2031 -11.1757 -0.4045 20 7 0.0448 -9.7379 -0.6322 21 6 1.0869 -9.1803 -1.5031 22 1 0.9615 -9.4791 -2.5438 23 6 1.0392 -7.6352 -1.3104 24 1 -0.4851 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8903 30 1 0.8531 -5.0451 0.8896 31 1 3.1010 -6.0927 0.8892 32 1 3.1009 -6.0919 -0.8908 33 1 2.3760 -9.0730 1.1587 34 1 3.6814 -8.2086 0.2993 35 1 2.6700 -11.5683 -1.4847 36 1 3.6016 -11.0877 -0.0513 37 1 1.6202 -12.4929 0.5320 38 1 1.5233 -10.8651 1.2540 39 1 -0.6292 -11.5455 0.1946 40 1 0.2293 -11.6974 -1.3612 41 1 -0.0024 -9.2363 0.2419 42 1 1.5753 -7.1344 -2.1165 43 1 0.0066 -7.2889 -1.2663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687816621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:05 Heat of formation + Delta-G solvation = -20.047701 kcal Electronic energy + Delta-G solvation = -18809.416989 eV Core-core repulsion = 16080.933352 eV Total energy + Delta-G solvation = -2728.483638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47396 -36.68336 -34.42122 -32.65606 -32.49782 -30.79624 -28.15771 -27.60366 -25.03670 -23.73526 -22.48717 -21.94265 -20.50336 -19.97421 -19.31306 -16.28628 -16.04959 -15.91581 -15.41096 -15.10703 -14.70672 -14.45283 -14.38545 -13.43055 -13.29099 -13.03051 -12.71118 -12.36710 -12.31792 -11.95828 -11.78453 -11.60713 -11.49623 -11.36108 -10.98709 -10.95719 -10.75866 -10.57274 -10.45421 -10.41870 -10.33775 -9.58736 -9.22257 -8.95770 -8.45306 -8.30467 -8.25700 -5.95130 -3.97222 3.33410 3.40618 3.44905 3.88056 4.10958 4.36528 4.42553 4.50010 4.52787 4.80805 4.87527 5.01312 5.18441 5.25419 5.35018 5.40261 5.40836 5.49695 5.54436 5.55822 5.67558 5.69850 5.73143 5.81512 5.87709 5.93756 6.00619 6.09000 6.17439 6.28466 6.55431 6.82859 6.95136 6.98379 7.02158 7.09345 7.27092 7.34786 7.74668 7.90808 8.06403 8.49190 9.10571 9.66510 11.16234 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.058306 B = 0.003235 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.108759 B = 8653.780848 C = 8891.373465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.053 3.947 13 N -0.531 5.531 14 C 0.045 3.955 15 C -0.143 4.143 16 H 0.070 0.930 17 C -0.104 4.104 18 C -0.159 4.159 19 C 0.061 3.939 20 N -0.683 5.683 21 C 0.089 3.911 22 H 0.096 0.904 23 C 0.039 3.961 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.356 0.644 42 H 0.054 0.946 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -23.753 -1.449 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.075 4.075 13 N -0.255 5.255 14 C -0.083 4.083 15 C -0.164 4.164 16 H 0.089 0.911 17 C -0.142 4.142 18 C -0.199 4.199 19 C -0.069 4.069 20 N -0.314 5.314 21 C -0.022 4.022 22 H 0.114 0.886 23 C -0.088 4.088 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.176 0.824 42 H 0.072 0.928 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.873 -23.675 -1.549 23.899 hybrid contribution 1.983 0.966 -0.049 2.206 sum 4.856 -22.709 -1.598 23.277 Atomic orbital electron populations 1.69983 1.06026 1.26373 1.51134 1.25036 0.94846 0.99217 0.95475 0.86563 0.80107 0.83937 0.77550 1.19798 1.21048 1.21031 1.21332 0.93025 0.91241 1.50152 0.92776 1.19086 0.94018 0.91307 0.97170 1.21601 0.99086 0.94136 0.99926 1.21615 0.97786 0.93416 1.02088 1.22425 0.95895 0.88991 1.00193 1.64241 1.27932 1.01914 1.31418 1.22760 0.95927 0.91644 0.97945 1.22256 0.99561 0.95777 0.98789 0.91144 1.20978 0.98663 0.94862 0.99705 1.22048 0.97024 1.01391 0.99395 1.21642 0.95766 0.89546 0.99932 1.60008 1.46874 1.03189 1.21341 1.22692 0.87995 0.94282 0.97255 0.88574 1.23818 1.00735 0.94028 0.90235 0.93118 0.96726 0.96594 0.93566 0.93807 0.92635 0.91710 0.91229 0.95118 0.90776 0.92744 0.91985 0.92087 0.91499 0.91621 0.90760 0.91462 0.82407 0.92797 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 11 C -0.11 -1.95 5.26 -26.73 -0.14 -2.09 16 12 C 0.05 0.76 4.59 -3.82 -0.02 0.75 16 13 N -0.53 -6.77 4.78 -229.09 -1.09 -7.86 16 14 C 0.05 0.49 6.01 -3.10 -0.02 0.47 16 15 C -0.14 -1.33 2.79 -90.75 -0.25 -1.59 16 16 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.10 -0.82 5.40 -27.68 -0.15 -0.97 16 18 C -0.16 -1.20 5.93 -27.36 -0.16 -1.36 16 19 C 0.06 0.50 6.46 -4.69 -0.03 0.47 16 20 N -0.68 -6.92 6.43 -105.63 -0.68 -7.59 16 21 C 0.09 0.89 4.01 -65.70 -0.26 0.63 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 23 C 0.04 0.47 5.22 -0.64 0.00 0.46 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.05 0.98 7.48 -51.93 -0.39 0.60 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.03 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 34 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.54 6.84 -51.93 -0.36 0.19 16 39 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.36 3.93 7.70 -39.29 -0.30 3.63 16 42 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 43 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -29.96 327.35 -10.89 -40.85 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.04 Total: -1.42 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.73 Total: -19.15 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -1.04 Total: -42.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.96 -10.89 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.804 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds